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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 767 fasta sequence
[CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCGGGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGC-TGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCC-GGTGGTGGAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGG-AGGTTTC-TGGGATGCTG-CAAAAC-AAAC-TCTTC-TTACGATCGTCGGTATTATCG-CCGCGTTTTT-CCTGATTGCAAACTT-CAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCT-CAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA]
[+] EMBL C73480 [CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCGGGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGC TGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCCGGGTGGTGGAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGGAAGGTTTCTTGGGATGCTG CAAAACAAAACTTTTTC TNACGATCGTCGGTATTATCG CCGNGTTTTT CCTGANTGCAAACTT CAATNTGCTG ]
[+] EMBL AU094319 [ ACATCTCGATCTCGATGCGGAAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGCTTGCTTCTTNTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAANCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGCCTCCTTCAGCC GGTGGTGGAGGATGGTCTGGAGGAGGTGGTTGGTTCAGGTGGTTCAGCAGTGG AGGTTTC TGGGATGCTG CAAAAC AAAC TCTTC TTACGATCGTCGGTATTATCG CCGCGTTTTT CCTGATTGCAAACTT CAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCT CAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA]
[+] EMBL C99129 [ TTCCAGTGGTTCCACCNTGG ANGTTTC TGGGATGCTGCCAAAAC AAC TCTTCTTTACGATCGTCGGTATTATCGCCCGCGTTTTTCCCTGATTGC AACTTCCAATGTGCTGGTAGCAGCTATTGTAAA TCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCTCCAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA]
consensusID : consensus_6973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence
[CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCCTCTTCTTCGCCGCCGGGAGTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGTTCGCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAANTAGGAACAGTGGAAATGCCTGGGGTGGAAGAAGACGGGGTTCCAAAATTGGGATGCNATTGAAAGAAGGCAGCAAAGCTGCTCCTTCAGCGGTGGTGGAGATGGTCTGGAGANGTGGTTGTTCANGTGGTCAACAGTGAAGTTCTTGGATGCTGCAAACAACTCTTCTTACNTCGCGGATATCGCGCGTTTCCTAATTNAACTTAATGTCTGGNACACTATTGNAATCACTCT]
[+] EMBL AU163720 [CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCCTCTTCTTCGCCGCCGGGAGTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGTTCGCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAANTAGGAACAGTGGAAATGCCTGGGGTGGAAGAAGACGGGGTTCCAAAATTGGGATGCNATTGAAAGAAGGCAGCAAAGCTGCTCCTTCAGCGGTGGTGGAGATGGTCTGGAGANGTGGTTGTTCANGTGGTCAACAGTGAAGTTCTTGGATGCTGCAAACAACTCTTCTTACNTCGCGGATATCGCGCGTTTCCTAATTNAACTTAATGTCTGGNACACTATTGNAATCACTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6973#0 CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCG 60
consensus_6973#1 ---CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCC-TCTTCTTCGCCGCCG 56
************************************ **** ***************
consensus_6973#0 GGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCT 120
consensus_6973#1 GGAGT-CCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCT 115
**** ******************************************************
consensus_6973#0 ACGGTGGCTTCGCCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCA 180
consensus_6973#1 ACGGTGG-TTCGCC-GCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCA 173
******* ****** *********************************************
consensus_6973#0 AGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTC 240
consensus_6973#1 AGCAGGATGAAN-TAGGAA--CAGTGGAAA-TGCC-TGGGGTGGAAGAAGACGGGG-TTC 227
*********** ****** ********* **** ******************** ***
consensus_6973#0 CAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCCGGTGGTG 300
consensus_6973#1 CAAAATTGGG-ATGCNA-TTGAAAGAAGGCAGCAAAGCT--GCTCCTTCAGC-GGTGGTG 282
********** **** * ******************* ********** *******
consensus_6973#0 GAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGGAGGTTTCTGGGATG 360
consensus_6973#1 GAG-ATGGTCTGGAG-ANGTGGTTG-TTCANGTGGT-CAACAGTGAAG--TTCTTGGATG 336
*** ******* *** * ** **** **** ***** ** ***** ** **** *****
consensus_6973#0 CTGCAAAACAAACTCTTCTTACGATCGTCGGTATTATCGCCGCGTTTTTCCTGATTGCAA 420
consensus_6973#1 CTGCAAAC--AACTCTTCTTACN-TCGCGGATAT------CGCGCGTTTCCTAATTN--A 385
******* ************ *** * *** **** ****** *** *
consensus_6973#0 ACTTCAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTC 480
consensus_6973#1 ACTT-AATGT-CTGGNAC--ACTATTGNAATCACTCT----------------------- 418
**** ***** **** * ****** ** * **
consensus_6973#0 GGCGTGCACTGTCATTCGTAGCTCAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGA 540
consensus_6973#1 ------------------------------------------------------------
consensus_6973#0 GGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAG 600
consensus_6973#1 ------------------------------------------------------------
consensus_6973#0 TTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGAT 660
consensus_6973#1 ------------------------------------------------------------
consensus_6973#0 CTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCA 720
consensus_6973#1 ------------------------------------------------------------
consensus_6973#0 CCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA 767
consensus_6973#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||