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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2016 fasta sequence
[GCAGCCATCAGGCCTACCACTACCACCTCATCCTTTGATTCCTCTCCATCTCCAGTACTGCATGCTGCTGCATCCTGCATCCTCCTCCAATCTTCCTCCGTCCCCTTCACCGAGGCATCAGCTAGCATTGACGGATGAGCGGCGCCGTTGGGGAGCCACCGAACACGAAGACGCCGTCGACGAGCACCCCGGCGCCATGGTTAGAGGAGAGGGGGCAGACAAGGAAGAGGAGGAGGCTCCGCCCACAGAGAAGAAGAGCAGACTCCTACCTTCTATCTCCACCGCTGCGCCTCCATCCTCATCACGCATCTTCTTGCCATCCCGTCGCTCCCAATCTCCACCGAGGTAGGTCAAGGTGGTGATAGAAGAAGGACGCCACCGAGTTCATGGCCAATCTGGAAGAGAGTTGCGCCCTTGCAGCAGTACGATGGTGATCGGTGTGATGTATCCAGGGATGTCATTCCCTTTGTTAGTGAACAAAGAAAAGATAGGGATCTTCAAGGTTCTAGGAACTCTGCCTATGACTACAGGACAAATTACCTCAGGGACCAAGATCATGATTTGGAAAGGTAGTGATGAGAAAACTGTTGGAGAGACCCTGTACCCACCAATCTTACATCCAGTCATTGCAACTCCTCTGCAAATGAAAATGGTGGATGACCCCGCTCTTTCTAATGTGGTTGGCAGAGCCAGTAAGATGATTGGTAATTTCATGAGTTACTATACTCACCTCCCACATGAGGCCACAAAGGGCAAAATGACATTTCTCTTACATGGTCCATGTGATAAAAAAGCTGTGGTTGAAGGGATAGGAAGGACCCTTGGTCTTCCTGTTGCGAGCGTGGATGCTTCGTCACTCATCAAGGACTTCCCTTCTGACTCTGTCTCACAGATCAACACCTGCATACAGAGACCTGAATCACGTGATGGTCCACTTCTGATCTTCCTTGACCGGTTTGATGAGTTGGTCCCTCACAACAGATGTGGTTCAACAGTTATGACTGACATAACAACCACCCAGCTTAAATTGCTGCTTGATGATCCTTGGGTGATTTTCGGGCATCGTATTACTATTCTGGTAGTATCTGTGAGGTGGATAAACCTGATATGCCCGACTATTCTCTCAAGAATCAGGACACGATTTTATTGTGGAAATGATGAGAAAGAGGGGGATTGGGATGGTGTTGGAATGTCTCTTCTAAAGTTATTGGAAACAAACAAGTCGATTGATCCAAATTCACGCTGGGTTGTGACAAATGCCATTCTGTATGGGAACACCTCGCTCAGTAAGAGTGATGTCACCAAACTCTTTGCAGCAACACAGTCATTCGATTCCATAGTCATTGATGCAATGCAAGTGCTGAAGGATTTTAAAAATACTGGGTCAAAGGCGGTGTCTGACCTGTTCCTGAGAGCTACAGCGAGAAGACCCTGCATTATACTGATTCAACAATTAGATGCTATCAACAACGAAACATTAATCTCCCTGATCTTACACGAGATGAACAACATGGATAGAGATCTACATGTGTTTGCTTCCACGAGGTGGTGGCAACTCATACACCATATGTTTTTGGAGTCACGCCTGTTCACGAGGAGAGTTTTTTGTGGCGTGGATTCAAAAAAAGATGAATGCGATTTTGTGGGCCAAGCTTTATTTGAGATACAACAGAGGATGGGAACAGCATCAGATAAGAGCACCTCCTCTTAAGGCAAAGGAGGGAGAGGAGATAAGATAACTCACCATTAGCGAGCTTACTGTATTGGTTATGATGCACTGGTGAAATTCGACGCCATTAGCTTTTACTGTATGTTTATGATGGGCTGGTAAAATTCAATTCCGTAATCAGTCATGGTGAGAGTTGTCTGGTAACTGTGAGGAACCTTAATTTTGAGCACTTGTCTGAATTTTTTTTTCTTTCGAGGTAACAGTTCCTAAAACTTGTCAAACTGCTGGCCTGTTGGCCATGCAAATACTCTATTTTGACAAATTAGCTATCTGCAACTTGCAAAAAA]
[+] EMBL AK068364 [GCAGCCATCAGGCCTACCACTACCACCTCATCCTTTGATTCCTCTCCATCTCCAGTACTGCATGCTGCTGCATCCTGCATCCTCCTCCAATCTTCCTCCGTCCCCTTCACCGAGGCATCAGCTAGCATTGACGGATGAGCGGCGCCGTTGGGGAGCCACCGAACACGAAGACGCCGTCGACGAGCACCCCGGCGCCATGGTTAGAGGAGAGGGGGCAGACAAGGAAGAGGAGGAGGCTCCGCCCACAGAGAAGAAGAGCAGACTCCTACCTTCTATCTCCACCGCTGCGCCTCCATCCTCATCACGCATCTTCTTGCCATCCCGTCGCTCCCAATCTCCACCGAGGTAGGTCAAGGTGGTGATAGAAGAAGGACGCCACCGAGTTCATGGCCAATCTGGAAGAGAGTTGCGCCCTTGCAGCAGTACGATGGTGATCGGTGTGATGTATCCAGGGATGTCATTCCCTTTGTTAGTGAACAAAGAAAAGATAGGGATCTTCAAGGTTCTAGGAACTCTGCCTATGACTACAGGACAAATTACCTCAGGGACCAAGATCATGATTTGGAAAGGTAGTGATGAGAAAACTGTTGGAGAGACCCTGTACCCACCAATCTTACATCCAGTCATTGCAACTCCTCTGCAAATGAAAATGGTGGATGACCCCGCTCTTTCTAATGTGGTTGGCAGAGCCAGTAAGATGATTGGTAATTTCATGAGTTACTATACTCACCTCCCACATGAGGCCACAAAGGGCAAAATGACATTTCTCTTACATGGTCCATGTGATAAAAAAGCTGTGGTTGAAGGGATAGGAAGGACCCTTGGTCTTCCTGTTGCGAGCGTGGATGCTTCGTCACTCATCAAGGACTTCCCTTCTGACTCTGTCTCACAGATCAACACCTGCATACAGAGACCTGAATCACGTGATGGTCCACTTCTGATCTTCCTTGACCGGTTTGATGAGTTGGTCCCTCACAACAGATGTGGTTCAACAGTTATGACTGACATAACAACCACCCAGCTTAAATTGCTGCTTGATGATCCTTGGGTGATTTTCGGGCATCGTATTACTATTCTGGTAGTATCTGTGAGGTGGATAAACCTGATATGCCCGACTATTCTCTCAAGAATCAGGACACGATTTTATTGTGGAAATGATGAGAAAGAGGGGGATTGGGATGGTGTTGGAATGTCTCTTCTAAAGTTATTGGAAACAAACAAGTCGATTGATCCAAATTCACGCTGGGTTGTGACAAATGCCATTCTGTATGGGAACACCTCGCTCAGTAAGAGTGATGTCACCAAACTCTTTGCAGCAACACAGTCATTCGATTCCATAGTCATTGATGCAATGCAAGTGCTGAAGGATTTTAAAAATACTGGGTCAAAGGCGGTGTCTGACCTGTTCCTGAGAGCTACAGCGAGAAGACCCTGCATTATACTGATTCAACAATTAGATGCTATCAACAACGAAACATTAATCTCCCTGATCTTACACGAGATGAACAACATGGATAGAGATCTACATGTGTTTGCTTCCACGAGGTGGTGGCAACTCATACACCATATGTTTTTGGAGTCACGCCTGTTCACGAGGAGAGTTTTTTGTGGCGTGGATTCAAAAAAAGATGAATGCGATTTTGTGGGCCAAGCTTTATTTGAGATACAACAGAGGATGGGAACAGCATCAGATAAGAGCACCTCCTCTTAAGGCAAAGGAGGGAGAGGAGATAAGATAACTCACCATTAGCGAGCTTACTGTATTGGTTATGATGCACTGGTGAAATTCGACGCCATTAGCTTTTACTGTATGTTTATGATGGGCTGGTAAAATTCAATTCCGTAATCAGTCATGGTGAGAGTTGTCTGGTAACTGTGAGGAACCTTAATTTTGAGCACTTGTCTGAATTTTTTTTTCTTTCGAGGTAACAGTTCCTAAAACTTGTCAAACTGCTGGCCTGTTGGCCATGCAAATACTC ]
[+] EMBL C26307 [ ACCTCAGGGACCAAGATCATGATTTGGAAAGGTAGTGATGAGAAAACTGTTGGAGAGACCCTGTACCCACCAATCTTACATCCAGTCATTGCAACTCCTCTGCAAATGAAAATGGTGGATGACCCCGCTCTTTCTAATGTGGTTGGCAGAG CAGTAAGATGATTGGTAATTTCATGAGTTACTATACTCACCTCCCACATGAGGCCACAAAGGGCAAAATGACATTTCTCTTACATGGTCCATGTGATAAAAAAGCTGTGGTTGAAGGGATAGGAAGGACCCTTGGTCTTCCTGTTGCGAGCGTGGATGCTTCGTCACTCATCAAGGACTTCCCTTCTGACTCTGTCTCACAGATCAACACCTG ]
[+] EMBL AU108257 [ TGCGATTTTGTGGGCCAAGCTTTATTTGAGATACAACAGAGGATGGGAACAGCATCAGATAAGAGCACCTCCTCTTAAGGCAAAGGAGGGAGAGGAGATAAGATAACTCACCATTAGCGAGCTTACTGTATTGGTTATGATGCACTGGTGAAATTCGACGCCATTAGNTTTTACTGTATGTTTATGATGGGCTGGTAAAATTCAATTCCGTAATCAGTCATGGTGAGAGTTGTCTGGTAACTGTGAGGAACCTTAATTTTGAGCACTTGTCTGAATTTTTNTTTCTTTCGAGGTAACANTTCCTAAAACTTGTCAAACTGCTGGCCTGTTGGCCATGCAAATACTCTATTTTGACAAATTAGCTATCTGCAACTTGCAAAAAA]
consensusID : consensus_6984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[TCACCGAGGCATCAGCTAGCATTGACGGATGAGCGGCGCCGTTGGGGAGCCACCGAACACGAAGACGCCGTCGACGAGCACCCCGGCGCCATGGTTAGAGGAGAGGGGGCAGACAAGGAAGAGGAGGAGGCTCCGCCCACAGAGAAGAAGAGCAGACTCCTACCTTCTATCTCCACCGCTGCGCCTCCATCCTCATCACGCATCTTCTTGCCATCCCGTCGCTCCCAATCTCCACCGAGGTAGGTCAAGGTGGTGATAGAAGAAGGACGCCACCGAGTTCATGGCCAATCTGGAAGAGAGTTGCGCCCTTGCAGCAGTACGATGGTGGTTGGTTCTCCGCTGGTATCTACTTAGTACAATCAATGCAGATCTGGATGAACTTTTCTCTGTGATTAAACTATTATTATTATCTTCAAGTCTCAATAGATGGTGATTGCTACTGCTA]
[+] EMBL AU197678 [TCACCGAGGCATCAGCTAGCATTGACGGATGAGCGGCGCCGTTGGGGAGCCACCGAACACGAAGACGCCGTCGACGAGCACCCCGGCGCCATGGTTAGAGGAGAGGGGGCAGACAAGGAAGAGGAGGAGGCTCCGCCCACAGAGAAGAAGAGCAGACTCCTACCTTCTATCTCCACCGCTGCGCCTCCATCCTCATCACGCATCTTCTTGCCATCCCGTCGCTCCCAATCTCCACCGAGGTAGGTCAAGGTGGTGATAGAAGAAGGACGCCACCGAGTTCATGGCCAATCTGGAAGAGAGTTGCGCCCTTGCAGCAGTACGATGGTGGTTGGTTCTCCGCTGGTATCTACTTAGTACAATCAATGCAGATCTGGATGAACTTTTCTCTGTGATTAAACTATTATTATTATCTTCAAGTCTCAATAGATGGTGATTGCTACTGCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6984#0 GCAGCCATCAGGCCTACCACTACCACCTCATCCTTTGATTCCTCTCCATCTCCAGTACTG 60
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 CATGCTGCTGCATCCTGCATCCTCCTCCAATCTTCCTCCGTCCCCTTCACCGAGGCATCA 120
consensus_6984#1 ----------------------------------------------TCACCGAGGCATCA 14
**************
consensus_6984#0 GCTAGCATTGACGGATGAGCGGCGCCGTTGGGGAGCCACCGAACACGAAGACGCCGTCGA 180
consensus_6984#1 GCTAGCATTGACGGATGAGCGGCGCCGTTGGGGAGCCACCGAACACGAAGACGCCGTCGA 74
************************************************************
consensus_6984#0 CGAGCACCCCGGCGCCATGGTTAGAGGAGAGGGGGCAGACAAGGAAGAGGAGGAGGCTCC 240
consensus_6984#1 CGAGCACCCCGGCGCCATGGTTAGAGGAGAGGGGGCAGACAAGGAAGAGGAGGAGGCTCC 134
************************************************************
consensus_6984#0 GCCCACAGAGAAGAAGAGCAGACTCCTACCTTCTATCTCCACCGCTGCGCCTCCATCCTC 300
consensus_6984#1 GCCCACAGAGAAGAAGAGCAGACTCCTACCTTCTATCTCCACCGCTGCGCCTCCATCCTC 194
************************************************************
consensus_6984#0 ATCACGCATCTTCTTGCCATCCCGTCGCTCCCAATCTCCACCGAGGTAGGTCAAGGTGGT 360
consensus_6984#1 ATCACGCATCTTCTTGCCATCCCGTCGCTCCCAATCTCCACCGAGGTAGGTCAAGGTGGT 254
************************************************************
consensus_6984#0 GATAGAAGAAGGACGCCACCGAGTTCATGGCCAATCTGGAAGAGAGTTGCGCCCTTGCAG 420
consensus_6984#1 GATAGAAGAAGGACGCCACCGAGTTCATGGCCAATCTGGAAGAGAGTTGCGCCCTTGCAG 314
************************************************************
consensus_6984#0 CAGTACGATGGTGATCGGTGTGATGTATCCAGGGATGTCATTCCCTTTGT-TAGTGAACA 479
consensus_6984#1 CAGTACGATGGTGGTTGGT------TCTCC---GCTGGTATCTACTTAGTACAATCAATG 365
************* * *** * *** * ** ** *** ** * * **
consensus_6984#0 AAGAAAAGATAGGGATCTTCAAGGTTCTAGGAACTCTGCCTATGACTACAGGACAAATTA 539
consensus_6984#1 CAGATCTGGATGAACTTTTCTCTGTGATTAAACTATTATTATTATCTTCAAGTCTCAATA 425
*** * * * *** ** * * * * ** ** * * * **
consensus_6984#0 CCTCAGGGACCAAGATCATGATTTGGAAAGGTAGTGATGAGAAAACTGTTGGAGAGACCC 599
consensus_6984#1 GAT-GGTGATTGCTACTGCTA--------------------------------------- 445
* * ** * *
consensus_6984#0 TGTACCCACCAATCTTACATCCAGTCATTGCAACTCCTCTGCAAATGAAAATGGTGGATG 659
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 ACCCCGCTCTTTCTAATGTGGTTGGCAGAGCCAGTAAGATGATTGGTAATTTCATGAGTT 719
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 ACTATACTCACCTCCCACATGAGGCCACAAAGGGCAAAATGACATTTCTCTTACATGGTC 779
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 CATGTGATAAAAAAGCTGTGGTTGAAGGGATAGGAAGGACCCTTGGTCTTCCTGTTGCGA 839
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 GCGTGGATGCTTCGTCACTCATCAAGGACTTCCCTTCTGACTCTGTCTCACAGATCAACA 899
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 CCTGCATACAGAGACCTGAATCACGTGATGGTCCACTTCTGATCTTCCTTGACCGGTTTG 959
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 ATGAGTTGGTCCCTCACAACAGATGTGGTTCAACAGTTATGACTGACATAACAACCACCC 1019
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 AGCTTAAATTGCTGCTTGATGATCCTTGGGTGATTTTCGGGCATCGTATTACTATTCTGG 1079
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 TAGTATCTGTGAGGTGGATAAACCTGATATGCCCGACTATTCTCTCAAGAATCAGGACAC 1139
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 GATTTTATTGTGGAAATGATGAGAAAGAGGGGGATTGGGATGGTGTTGGAATGTCTCTTC 1199
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 TAAAGTTATTGGAAACAAACAAGTCGATTGATCCAAATTCACGCTGGGTTGTGACAAATG 1259
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 CCATTCTGTATGGGAACACCTCGCTCAGTAAGAGTGATGTCACCAAACTCTTTGCAGCAA 1319
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 CACAGTCATTCGATTCCATAGTCATTGATGCAATGCAAGTGCTGAAGGATTTTAAAAATA 1379
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 CTGGGTCAAAGGCGGTGTCTGACCTGTTCCTGAGAGCTACAGCGAGAAGACCCTGCATTA 1439
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 TACTGATTCAACAATTAGATGCTATCAACAACGAAACATTAATCTCCCTGATCTTACACG 1499
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 AGATGAACAACATGGATAGAGATCTACATGTGTTTGCTTCCACGAGGTGGTGGCAACTCA 1559
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 TACACCATATGTTTTTGGAGTCACGCCTGTTCACGAGGAGAGTTTTTTGTGGCGTGGATT 1619
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 CAAAAAAAGATGAATGCGATTTTGTGGGCCAAGCTTTATTTGAGATACAACAGAGGATGG 1679
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 GAACAGCATCAGATAAGAGCACCTCCTCTTAAGGCAAAGGAGGGAGAGGAGATAAGATAA 1739
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 CTCACCATTAGCGAGCTTACTGTATTGGTTATGATGCACTGGTGAAATTCGACGCCATTA 1799
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 GCTTTTACTGTATGTTTATGATGGGCTGGTAAAATTCAATTCCGTAATCAGTCATGGTGA 1859
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 GAGTTGTCTGGTAACTGTGAGGAACCTTAATTTTGAGCACTTGTCTGAATTTTTTTTTCT 1919
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 TTCGAGGTAACAGTTCCTAAAACTTGTCAAACTGCTGGCCTGTTGGCCATGCAAATACTC 1979
consensus_6984#1 ------------------------------------------------------------
consensus_6984#0 TATTTTGACAAATTAGCTATCTGCAACTTGCAAAAAA 2016
consensus_6984#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||