These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1181 fasta sequence [AATCGTTGGAGAAGCAAAAGCGCACGGCACGAGGGACGCCCAATCCTCCGTGTCCGTTGGCTCAACTCGACCAAACAACCGCCTTTTTTTTAGTCTCCACTCTCTCCACTTCCCCCCCTCCATTGCCGCCCCGTTTCTCTCTCTGATCGGCAAAAAAGTGGATGCTCCGGCTGCTCGACCGCCATGGTGAGGTCTCTCGACAGCTACCCCTCCATCAAAGATGTCACCTACAGCTGCGGATACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCCAAGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGGTTCACGCAGGCCGACGAGGTCACCTGCGTGCCCTACTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCCGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATTTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTATAGTCTTTTGGTTTTCCAGAAATAGGCATGTATCTTCAGTTTTGTTAAGCTGATA] [+] EMBL AK106052 [AATCGTTGGAGAAGCAAAAGCGCACGGCACGAGGGACGCCCAATCCTCCGTGTCCGTTGGCTCAACTCGACCAAACAACCGCCTTTTTTTTAGTCTCCACTCTCTCCACTTCCCCCCCTCCATTGCCGCCCCGTTTCTCTCTCTGATCGGCAAAAAAGTGGATGCTCCGGCTGCTCGACCGCCATGGTGAGGTCTCTCGACAGCTACCCCTCCATCAAAGATGTCACCTACAGCTGCGGATACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCCAAGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGGTTCACGCAGGCCGACGAGGTCACCTGCGTGCCCTACTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCCGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATTTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGC ] [+] EMBL AK072813 [ CCCGTTTCTCTCTCTGATCGGCAAAAAAGTGGATGCTCCGGCTGCTCGACCGCCATGGTGAGGTCTCTCGACAGCTACCCCTCCATCAAAGATGTCACCTACAGCTGCGGATACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCCAAGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGGTTCACGCAGGCCGACGAGGTCACCTGCGTGCCCTACTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCCGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTATAGTCTTTTGGTTTTCCAGAAATAGGCATGTATCTTCAGTTTTGTTAAGCTGATA] consensusID : consensus_6994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CCCTACTTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCTGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAGTTTGCTGTAAAAAGAAAAAAAAAAAAA] [+] EMBL BI805241 [CCCTACTTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCTGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAGTTTGCTGTAAAAAGAAAAAAAAAAAAA] consensusID : consensus_6994#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [GTAGACAAGTAGTGCTTNTCTTTTCTTCNGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTACAAAAAAAAAAAAAAAAA] [+] EMBL AU108412 [GTAGACAAGTAGTGCTTNTCTTTTCTTCNGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTACAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6994#0 AATCGTTGGAGAAGCAAAAGCGCACGGCACGAGGGACGCCCAATCCTCCGTGTCCGTTGG 60 consensus_6994#1 ------------------------------------------------------------ consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 CTCAACTCGACCAAACAACCGCCTTTTTTTTAGTCTCCACTCTCTCCACTTCCCCCCCTC 120 consensus_6994#1 ------------------------------------------------------------ consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 CATTGCCGCCCCGTTTCTCTCTCTGATCGGCAAAAAAGTGGATGCTCCGGCTGCTCGACC 180 consensus_6994#1 ------------------------------------------------------------ consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 GCCATGGTGAGGTCTCTCGACAGCTACCCCTCCATCAAAGATGTCACCTACAGCTGCGGA 240 consensus_6994#1 ------------------------------------------------------------ consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 TACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCC 300 consensus_6994#1 ------------------------------------------------------------ consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 AAGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGG 360 consensus_6994#1 ------------------------------------------------------------ consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 TTCACGCAGGCCGACGAGGTCACCTGCGTGCCCTACTT-CCACTCGCGGCGCTCCTGGGG 419 consensus_6994#1 ------------------------------CCCTACTTTCCACTCGCGGCGCTCCTGGGG 30 consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 GCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCCGCATCGGCAGCGC 479 consensus_6994#1 GCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCTGCATCGGCAGCGC 90 consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 CTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCT 539 consensus_6994#1 CTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCT 150 consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 GCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAA 599 consensus_6994#1 GCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAA 210 consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 GATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACG 659 consensus_6994#1 GATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACG 270 consensus_6994#2 ----------------------------------------------GTAGACAAGTAGTG 14 * * * * consensus_6994#0 ATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAA 719 consensus_6994#1 ATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAA 330 consensus_6994#2 CTTNTCTTTTCTTCNGTGAATTGGTGGGA---GTATACACTGGTTGTT--AATTTTTGGA 69 ** * * * * ** * * * * * * * * * ** * * * ** * * consensus_6994#0 TTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGT 779 consensus_6994#1 TTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGT 390 consensus_6994#2 TCTG--TTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTT 127 * * ** * ** **** * * **** ** * * * ** * consensus_6994#0 GAGCTTTTGGAAGGGTTTGATACCA-TCATGATCTTGAGTCACCTTTGCTGTCTGTAGTA 838 consensus_6994#1 GAGCTTTTGGAAGGGTTTGATACCA-TCATGATCTTGAGTCACCTTTGCTGTCTGTAGTA 449 consensus_6994#2 GTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATG 187 * * * * * * ** *** * ** ******** *** * *** * consensus_6994#0 GACTA-GTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAAT 897 consensus_6994#1 GACTA-GTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAAT 508 consensus_6994#2 TCTTAAGTTTCTCTACACGGATTCTTCATTAGTCT-TCTAAGAAAGCATGGGTTGTTG-- 244 ** ** ** * * * * * * * ** * ** ******* consensus_6994#0 TTTTGGATTTGTTAATATTGGAAAAT-----GACAAAGTTTGCTGTATGTGGCTTGGCCC 952 consensus_6994#1 TTTTGGATCTGTTAATATTGGAAAAT-----GACAA-GTTTGCTGTAAAAAGAAAAAAAA 562 consensus_6994#2 CATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTACAAAAAAAAAAAA 304 *** * **** * **** * ** *** ** consensus_6994#0 TATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTT 1012 consensus_6994#1 AAAAA------------------------------------------------------- 567 consensus_6994#2 AAAAA------------------------------------------------------- 309 * consensus_6994#0 TACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGG 1072 consensus_6994#1 ------------------------------------------------------------ consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 GTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTATAGTCT 1132 consensus_6994#1 ------------------------------------------------------------ consensus_6994#2 ------------------------------------------------------------ consensus_6994#0 TTTGGTTTTCCAGAAATAGGCATGTATCTTCAGTTTTGTTAAGCTGATA 1181 consensus_6994#1 ------------------------------------------------- consensus_6994#2 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||