These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1256 fasta sequence [TCAACAAAACGGTGTTGTTGAAAGGAAAAATCGTGTTTTGGTTGAGATGGCTAGAACGATGTTGGATGAATATAAAACTCCTAGAAAATTTTGGGCTGAGGCTATTAACACTGCTTGTTATATTTCAAATCGGGTTTTCTTGAGATCTAAACTTGGAAAAACTTCTTATGAACTTCGATTTGGTCATCAACCCAAAGTTTCACATTTGCGTGTTTTTGGTTGCAAGTGCTTTGTCTTGAAATCTAGAAATTTGGATAAGTTTGAGGCACGTTCTACCGATGGATTGTTTCTTGGTTACCCCGCACATACTCGTGACTATCGTGTACTTATTTTGGGGACTAACAAAATCGTGGAGACTTGTGAAGTTTCTTTTGATGAGGCTAGTCCCGGTACTAGACATGAAATCGCAGGTACACTGTCACAGGTTCAGGAGGAGGATGGTCGTATTTTTGAAGACGAGAGCGACTACGACGACGACAACGAGGTCGGCTCGGCCGGTCAGACCGGGCGCCA-GGCCGGTCAGACCGCCGGCACACCTCCGGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGTTGATGCTGATCGAGATGGTCCTCCGGAGATTACAACTTCGACCAGTACGGATACAGAACGTGGATCAACTTCAGAAGTTGCTGCTCCTTTGCACATTCAACGACGACATCCACCGGAACAAATTATTGGTAATATAGGTGAGCGGACTACAAGGTCTAAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCAGATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCA] [+] EMBL AK064639 [TCAACAAAACGGTGTTGTTGAAAGGAAAAATCGTGTTTTGGTTGAGATGGCTAGAACGATGTTGGATGAATATAAAACTCCTAGAAAATTTTGGGCTGAGGCTATTAACACTGCTTGTTATATTTCAAATCGGGTTTTCTTGAGATCTAAACTTGGAAAAACTTCTTATGAACTTCGATTTGGTCATCAACCCAAAGTTTCACATTTGCGTGTTTTTGGTTGCAAGTGCTTTGTCTTGAAATCTAGAAATTTGGATAAGTTTGAGGCACGTTCTACCGATGGATTGTTTCTTGGTTACCCCGCACATACTCGTGACTATCGTGTACTTATTTTGGGGACTAACAAAATCGTGGAGACTTGTGAAGTTTCTTTTGATGAGGCTAGTCCCGGTACTAGACATGAAATCGCAGGTACACTGTCACAGGTTCAGGAGGAGGATGGTCGTATTTTTGAAGACGAGAGCGACTACGACGACGACAACGAGGTCGGCTCGGCCGGTCAGACCGGGCGCCA GGCCGGTCAGACCGCCGGCACACCTCCGGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGTTGATGCTGATCGAGATGGTCCTCCGGAGATTACAACTTCGACCAGTACGGATACAGAACGTGGATCAACTTCAGAAGTTGCTGCTCCTTTGCACATTCAACGACGACATCCACCGGAACAAATTATTGGTAATATAGGTGAGCGGACTACAAGGTCTAAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCAGATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCA] [+] EMBL CB637697 [ TTGTTATATTTCAAATCGGGTTTTCTTGAGATCTAAACTTGGAAAAACTTCTTATGAACTTCGATTTGGTCATCAACCCAAAGTTTCACATTTGCGTGTTTTTGGTTGCAAGTGCTTTGTCTTGAAATCTAGAAATTTGGATAAGTTTGAGGCACGTTCTACCGATGGATTGTTTCTTGGTTACCCCGCACATACTCGTGACTATCGTGTACTTATTTTGGGGACTAACAAAATCGTGGAGACTTGTGAAGTTTCTTTTGATGAGGCTAGTCCCGGTACTAGACATGAAATCGCAGGTACACTGTCACAGGTTCAGGAGGAGGATGGTCGTATTTTTGAAGACGAGAGCGACTACGACGACGACAACGAGGTCGGCTCGGCCGGTCAGACCGGGCGCCAGGGCCGGTCANACCGCCGGCACACCTCCGGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGTTG ] [-] EMBL CB642319 [ CAGACCGGGCGCCA GTCCGGTCAGACCGCCGGCACACCTCCGGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGTTGATGCTGATCGAGATGGTCCTCCGGAGATTACAACTTCGACCAGTACGGATCCAGAACGTGGATCAACTTCAGAAGTTGCTGCTCCTTTGCACATTCACCGACGACATCCACCGGAACAAATTATTGGTAATATAGGTGAGCGGACTACAAGGTCTAAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTCCTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTGTAaaaaaaaag ] consensusID : consensus_7003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [ATAATCAACTGTTCGTTCAGATTTATGTGGATGATATCATCTTTGGTTGTTTGACTCACGCTTTGGTTGTAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCAGATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCTTTTCTTGGTACATC] [-] EMBL CB637698 [ATAATCAACTGTTCGTTCAGATTTATGTGGATGATATCATCTTTGGTTGTTTGACTCACGCTTTGGTTGTAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCAGATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCTTTTCTTGGTACATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7003#0 TCAACAAAACGGTGTTGTTGAAAGGAAAAATCGTGTTTTGGTTGAGATGGCTAGAACGAT 60 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 GTTGGATGAATATAAAACTCCTAGAAAATTTTGGGCTGAGGCTATTAACACTGCTTGTTA 120 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 TATTTCAAATCGGGTTTTCTTGAGATCTAAACTTGGAAAAACTTCTTATGAACTTCGATT 180 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 TGGTCATCAACCCAAAGTTTCACATTTGCGTGTTTTTGGTTGCAAGTGCTTTGTCTTGAA 240 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 ATCTAGAAATTTGGATAAGTTTGAGGCACGTTCTACCGATGGATTGTTTCTTGGTTACCC 300 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 CGCACATACTCGTGACTATCGTGTACTTATTTTGGGGACTAACAAAATCGTGGAGACTTG 360 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 TGAAGTTTCTTTTGATGAGGCTAGTCCCGGTACTAGACATGAAATCGCAGGTACACTGTC 420 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 ACAGGTTCAGGAGGAGGATGGTCGTATTTTTGAAGACGAGAGCGACTACGACGACGACAA 480 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 CGAGGTCGGCTCGGCCGGTCAGACCGGGCGCCAGGCCGGTCAGACCGCCGGCACACCTCC 540 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 GGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGT 600 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 TGATGCTGATCGAGATGGTCCTCCGGAGATTACAACTTCGACCAGTACGGATACAGAACG 660 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 TGGATCAACTTCAGAAGTTGCTGCTCCTTTGCACATTCAACGACGACATCCACCGGAACA 720 consensus_7003#1 ------------ATAATCAACTGTTCGTTCAGATTTATGTGGATGATATC---------- 38 * ** *** ** ** * * ** ** *** consensus_7003#0 AATTATTGGTAATATAGGTGAGCGGACTACAAGGTCTAAGATTTTGCTGAGACTATGCGC 780 consensus_7003#1 -ATCTTTGGTTGTTTGACT---CACGCTTT--GGTTGTAGATTTTGCTGAGACTATGCGC 92 ** ***** * * * * ** *** ********************** consensus_7003#0 AGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAG 840 consensus_7003#1 AGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAG 152 ************************************************************ consensus_7003#0 CAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGG 900 consensus_7003#1 CAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGG 212 ************************************************************ consensus_7003#0 TTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGAT 960 consensus_7003#1 TTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGAT 272 ************************************************************ consensus_7003#0 CCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTG 1020 consensus_7003#1 CCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTG 332 ************************************************************ consensus_7003#0 TATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAA 1080 consensus_7003#1 TATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAA 392 ************************************************************ consensus_7003#0 GCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCAT 1140 consensus_7003#1 GCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCAT 452 ************************************************************ consensus_7003#0 ACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCA 1200 consensus_7003#1 ACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCA 512 ************************************************************ consensus_7003#0 GATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCA---- 1256 consensus_7003#1 GATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCTTTTC 572 ******************************************************* consensus_7003#0 ---------- consensus_7003#1 TTGGTACATC 582 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||