These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 855 fasta sequence [AGCAAAGCACTTGTAGAAAAATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGTTTGTACCAATGAATCCTTTCTCCCCGCTAAATTTAATTTTGGCATGCCTTCTATTATTTTTTACTTTTGTTGAACAACACTCATCACATGCTCTGGGTATATATATGAGCCTATATTGGGATGTTTTATGACTATCAGATACACAATGCACTGGGTGTGGCACAATAATTCTAATGTTTAATTTTCACTGTTATTTTTTGTTTATGGATAAGCTAGTACTAACAATATTTACACTTGCTCTTGATATTAAGGAGTACTAGCTTATTGAACTAACACTGTATTAATATGGTCATGCGTGCATGTATACTAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTGGATGACCGTATTTATTTGTTCA] [+] EMBL CB675955 [AGCAAAGCACTTGTAGAAAAATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGTTTGTACCAATGAATCCTTTCTCCCCGCTAAATTTAATTTTGGCATGCCTTCTATTATTTTTTACTTTTGTTGAACAACACTCATCACATGCTCTGGGTATATATATGAGCCTATATTGGGATGTTTTATGACTATCAGATACACAATGCACTGGGTGTGGCACAATAATTCTAATGTTTAATTTTCACTGTTATTTTTTGTTTATGGATAAGCTAGTACTAACAATATTTACACTTGCTCTTGATATTAAGGAGTACTAGCTTATTGAACTAACACTGTATTAATATGGTCATGCGTGCATGTATACTAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTGGATGACCGTATTTATTTGTTCA] consensusID : consensus_7005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence [GATGATTAAGGGCGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATTATCTTTTTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATATTTCATGATTCTTTTATTATCTTACACAATAGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAA] [+] EMBL CB678389 [GATGATTAAGGGCGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATTATCTTTTTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATATTTCATGATTCTTTTATTATCTTAC ] [+] EMBL CB675167 [ CGCAAACATTTCTAGTACCCAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATTATCTTTTTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATATTTCATGATTCTTTTATTATCTTACACAATAGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAA] consensusID : consensus_7005#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [CCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGACTTCAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCGGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCTTCCGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATCCGGACCTTTGATTTAACTTTTGATCCCATA] [+] EMBL CA764307 [CCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGACTTCAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCGGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCTTCCGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATCCGGACCTTTGATTTAACTTTTGATCCCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7005#1 ------------------------------------------------------------ consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 AGCAAAGCACTTGTAGAAAAATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATG 60 consensus_7005#1 ------------------------------------------------------------ consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 GTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGTTTGTACCAATGAATCCTTTCTCC 120 consensus_7005#1 ------------------------------------------------------------ consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 CCGCTAAATTTAATTTTGGCATGCCTTCTATTATTTTTTACTTTTGTTGAACAACACTCA 180 consensus_7005#1 ------------------------------------------------------------ consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 TCACATGCTCTGGGTATATATATGAGCCTATATTGGGATGTTTTATGACTATCAGATACA 240 consensus_7005#1 ------------------------------------------------------------ consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 CAATGCACTGGGTGTGGCACAATAATTCTAATGTTTAATTTTCACTGTTATTTTTTGTTT 300 consensus_7005#1 ------------------------------------------------------GATGAT 6 consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 ATGGATAAGCTAGTACTAACAATATTTACACTTGCTCTTGATATTAAGGAGTACTAGCTT 360 consensus_7005#1 TAAGGGCGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGGAAAAGCCATTC 66 consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 ATTGAACTAACACTGTATTAATATGGTCATGCGTGCATGTATACTAGGGAAAAGCCATTC 420 consensus_7005#1 TTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTC 126 consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 TTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTC 480 consensus_7005#1 GGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCT 186 consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 GGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCT 540 consensus_7005#1 CTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCC 246 consensus_7005#2 ------------------------------CCCCTGCTAACAACAACAATAGGGAGTGCC 30 consensus_7005#0 CTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCC 600 ****************************** consensus_7005#1 CCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCC 306 consensus_7005#2 CCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGACTTCAACCACAATTTCC 90 consensus_7005#0 CCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCC 660 ******************************************* ** ************* consensus_7005#1 AGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAAC 366 consensus_7005#2 AGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCGGAGGGCTACAAC 150 consensus_7005#0 AGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAAC 720 *********************************************** ************ consensus_7005#1 ATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCA 426 consensus_7005#2 ATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCA 210 consensus_7005#0 ATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCA 780 ************************************************************ consensus_7005#1 ATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATC 486 consensus_7005#2 ATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATC 270 consensus_7005#0 ATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTGGATGACC 840 **************************************************** ** * consensus_7005#1 TTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATTATCTTT 546 consensus_7005#2 TTCTTGGTAGCAGCATGAACAAAGGGAACATTTAC------------------------- 305 consensus_7005#0 GTATTTATTTGTTCA--------------------------------------------- 855 * ** * ** consensus_7005#1 TTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATATTTCATG 606 consensus_7005#2 ------------------------------------------------------------ consensus_7005#0 ------------------------------------------------------------ consensus_7005#1 ATTCTTTTATTATCTTACACAATAGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAA 666 consensus_7005#2 ------------------------GGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAA 341 consensus_7005#0 ------------------------------------------------------------ consensus_7005#1 CCGACCAATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTT 726 consensus_7005#2 CCGACCAATGTACGGCCCTTCCGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTT 401 consensus_7005#0 ------------------------------------------------------------ consensus_7005#1 GTTCGACATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAA 780 consensus_7005#2 GTTCGACATCATAGACATCCGGACCTTTGATTTAACTTTTGATCCCATA----- 450 consensus_7005#0 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||