These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1110 fasta sequence [CCTTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGGCGACGCCATGGCCGCCGCGCTCCGCGCCGCCCTCCGCCGCCGCCACGCCGCCTCTTCGCCGGTGGCCCGCCTCCTGCCGTACTCGTCCCCTGGACCCTGCGCCAAGGGCGGTGGCGCCGCCTCCACCCTCCACGCCGCCACGCGCGGCGCGCCCGCTCCGTCGATCCAGGCGCCCTCCGTTGTCCGCCGCTACTGCTCCGCCGGGGGAGGATACGCCGCCGTGCGCCCTGCTCGCGGCGCCTCCCCGCTCCAGGTACCCTCTCTGGTACGCCGCTACGGCTCCACCACGGGAGCCACTGCTACCGCCACCCCTGCCGCTGGCGTCCCTGCCCTTCACCGTGCATCTCCACTTCCCCTCTTTGTGCCCCGCCGCCGCCGTGTGTATTCTTCTGAGGAGTATTCTTCTGATGAGTATTCTTCTGATGGGTATTCTTCTGGTCAGGAATACAAGTATGTGGAGGATTGCCAAGTGGCTAAGGTTATGGATCATCAACTCAGAAGGATTGAGAAAGTTGAGGCTGGACTAAAGCAGCTCGGGTGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAGGTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAGCAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATTGATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCCATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGATAAACCTGGGATGTTTCTGATGTGAACTGGAAATGGACTATCATGGCATTCATGTAGTGCACTTCGATTCTTCAGTCGACACAAAAAAAA] [+] EMBL AK102840 [CCTTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGGCGACGCCATGGCCGCCGCGCTCCGCGCCGCCCTCCGCCGCCGCCACGCCGCCTCTTCGCCGGTGGCCCGCCTCCTGCCGTACTCGTCCCCTGGACCCTGCGCCAAGGGCGGTGGCGCCGCCTCCACCCTCCACGCCGCCACGCGCGGCGCGCCCGCTCCGTCGATCCAGGCGCCCTCCGTTGTCCGCCGCTACTGCTCCGCCGGGGGAGGATACGCCGCCGTGCGCCCTGCTCGCGGCGCCTCCCCGCTCCAGGTACCCTCTCTGGTACGCCGCTACGGCTCCACCACGGGAGCCACTGCTACCGCCACCCCTGCCGCTGGCGTCCCTGCCCTTCACCGTGCATCTCCACTTCCCCTCTTTGTGCCCCGCCGCCGCCGTGTGTATTCTTCTGAGGAGTATTCTTCTGATGAGTATTCTTCTGATGGGTATTCTTCTGGTCAGGAATACAAGTATGTGGAGGATTGCCAAGTGGCTAAGGTTATGGATCATCAACTCAGAAGGATTGAGAAAGTTGAGGCTGGACTAAAGCAGCTCGGGTGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAGGTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAGCAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATTGATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCCATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTT ] [+] EMBL AU083423 [ TAAAGCAGCTCGGGTGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAGGTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAGCAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATTGATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCCATTTTGATTCGTAACCTGTTTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGATAAACCTGGGATGTTTCTGATGTGAACTGGAAATGGACTATCATGGCATTCATGTAGTGCACTTCGATTCTTCAGTCGACACAAAAAAAA] [+] EMBL AU068009 [ AAGAGCAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGANGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATTNATAGCCGTAGTTTCTGATCNTTGTCAGTGTAGTTTGCTGGTG TGCGCTGCATGTTTCCATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGATAAACCTGGGATGTTTCTGATGTGAAaaaaa ] consensusID : consensus_7007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [TTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGGCGACGCATGGCCGCCGGCTCCGGCGCCCTCCGCCGCCGCACGNCGNCTCTTCGNCGGTGGCCGCTCCTGCGTACTCGTCCNTGGCCCTGCGCCAAGGCGGTGGCGCGCTCCACCCTNCACGTCGCACGGCGGGCGCCGCTCCGTCGATCCAGGCGCCTCNTTGTCCGCGTATTCTCCGCGGGAGGATACGC] [+] EMBL C74083 [TTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGGCGACGCATGGCCGCCGGCTCCGGCGCCCTCCGCCGCCGCACGNCGNCTCTTCGNCGGTGGCCGCTCCTGCGTACTCGTCCNTGGCCCTGCGCCAAGGCGGTGGCGCGCTCCACCCTNCACGTCGCACGGCGGGCGCCGCTCCGTCGATCCAGGCGCCTCNTTGTCCGCGTATTCTCCGCGGGAGGATACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7007#0 CCTTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGC 60 consensus_7007#1 --TTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGC 58 ********************************************************** consensus_7007#0 GGCGACGCCATGGCCGCCGCGCTCCGCGCCGCCCTCCGCCGCCGCCACGCCGCCTCTTCG 120 consensus_7007#1 GGCGACGC-ATGGCCGCCG-GCTCCG--GCGCCCTCCGCCGCCGC-ACGNCGNCTCTTCG 113 ******** ********** ****** **************** *** ** ******* consensus_7007#0 CCGGTGGCCCGCCTCCTGCCGTACTCGTCCCCTGGACCCTGCGCCAAGGGCGGTGGCGCC 180 consensus_7007#1 NCGGTGGCC--GCTCCTGC-GTACTCGTCCNT--GGCCCTGCGCCAAGG-CGGTGGCGCG 167 ******** ******* ********** * ************* ********* consensus_7007#0 GCCTCCACCCTCCACGCCGCCACGCGCGGCGCGCCCGCTCCGTCGATCCAGGCGCCCTCC 240 consensus_7007#1 --CTCCACCCTNCACGTCGC-ACGGCGGGCGC---CGCTCCGTCGATCCAGGCGCCT--C 219 ********* **** *** *** ***** ********************* * consensus_7007#0 GTTGTCCGCCGCTACTGCTCCGCCGGGGGAGGATACGCCGCCGTGCGCCCTGCTCGCGGC 300 consensus_7007#1 NTTGTCCGCG--TATT-CTCCGC---GGGAGGATACGC---------------------- 251 ******** ** * ****** ************ consensus_7007#0 GCCTCCCCGCTCCAGGTACCCTCTCTGGTACGCCGCTACGGCTCCACCACGGGAGCCACT 360 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 GCTACCGCCACCCCTGCCGCTGGCGTCCCTGCCCTTCACCGTGCATCTCCACTTCCCCTC 420 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 TTTGTGCCCCGCCGCCGCCGTGTGTATTCTTCTGAGGAGTATTCTTCTGATGAGTATTCT 480 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 TCTGATGGGTATTCTTCTGGTCAGGAATACAAGTATGTGGAGGATTGCCAAGTGGCTAAG 540 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 GTTATGGATCATCAACTCAGAAGGATTGAGAAAGTTGAGGCTGGACTAAAGCAGCTCGGG 600 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 TGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAG 660 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 GTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAG 720 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 CAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTC 780 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 ATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATT 840 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 GATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCC 900 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 ATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTT 960 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 GCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGA 1020 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 TAAACCTGGGATGTTTCTGATGTGAACTGGAAATGGACTATCATGGCATTCATGTAGTGC 1080 consensus_7007#1 ------------------------------------------------------------ consensus_7007#0 ACTTCGATTCTTCAGTCGACACAAAAAAAA 1110 consensus_7007#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||