These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 764 fasta sequence [TTCCTGTTTTTGGTGAGAGGCTCGTGCGCCGGTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGCATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATACTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGGAAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATG] [-] EMBL CA754491 [TTCCTGTTTTTGGTGAGAGGCTCGTGCGCCGGTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGCATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATACTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGGAAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGC ] [+] EMBL CB676395 [ tCGCCGNTAAGTACCTTTTTTCTTATCCTCAAAAGTTAACAAAACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCCCGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGG AAAAAAAAAAACAAGGATAAGGTAAATGAGTTAGCTGTGAAAAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGCATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATACTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGGAAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATG] consensusID : consensus_7021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [TTTTTTTTTTTTGCAATCTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAAAACTTTGAGATGATCCCTGACCAGCAAAGGATGTCATGAGTCTCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATGCAAGGAGCGGAATTCAAAACTACCCATAACCGCATATCATCAAGAACCCCTTGTCTCGTCCTC] [+] EMBL CA763469 [TTTTTTTTTTTTGCAATCTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAAAACTTTGAGATGATCCCTGACCAGCAAAGGATGTCATGAGTCTCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATGCAAGGAGCGGAATTCAAAACTACCCATAACCGCATATCATCAAGAACCCCTTGTCTCGTCCTC] consensusID : consensus_7021#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [TTTTTTTTTTTTTTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATNTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAGGGAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTNGTCAGTTGCATCGGTGGCCGTCTTCTGAACATTCAGAATTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTTTCTGACGATNTCGTGCNGAATTCGGCACGAGCTCGTGCAGAATCCT] [-] EMBL BE228965 [TTTTTTTTTTTTTTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATNTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAGGGAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTNGTCAGTTGCATCGGTGGCCGTCTTCTGAACATTCAGAATTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTTTCTGACGATNTCGTGCNGAATTCGGCACGAGCTCGTGCAGAATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7021#1 ---TTTTTTTTTTTTGCAATCTCG----CCGTTAAGTACCTTTTTTTTTACCCTCAAAAG 53 consensus_7021#2 ----TTTTTTTTTTT----TTTCG----CCGTTAAGTACCTTTTTTTTTACCCTCAAAAG 48 consensus_7021#0 TTCCTGTTTTTGGTGAGAGGCTCGTGCGCCGGTAAGTACCTTTTTTTTTACCCTCAAAAG 60 * ***** * *** *** **************************** consensus_7021#1 TTAACAAAACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTC 113 consensus_7021#2 TTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTC 108 consensus_7021#0 TTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTC 120 ******************** *************************************** consensus_7021#1 AGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGA 173 consensus_7021#2 AGGGAGGGGCACATCAATNTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCA-GGGA 167 consensus_7021#0 AGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGA 180 ****************** ************************************ **** consensus_7021#1 AAAAAAAA---CAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGC 230 consensus_7021#2 AAAAAAAA---CAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTNGTCAGTTGC 224 consensus_7021#0 AAAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGC 240 ******** *************************************** ***** *** consensus_7021#1 ATCGGTGGCCGTCTTCTGAACATTCAAAACTTTGAGATGATCCCTGACCAGCAAAGGATG 290 consensus_7021#2 ATCGGTGGCCGTCTTCTGAACATTCAGAATTTTGAGATGATCCCTGACCAGCAGAGGATG 284 consensus_7021#0 ATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATG 300 ************************** ** *********************** ****** consensus_7021#1 TCATGAGTCTCTG--ACGATCTTAA-CATTTCTGAAG--GACAGCAT------------- 332 consensus_7021#2 TCATGAGTTTCTG--ACGATNTCG-----TGCNGAATTCGGCACGAG------------- 324 consensus_7021#0 TCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGC 360 ******** **** *** * * * ** * consensus_7021#1 ----CACAGTAA-GAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCG 387 consensus_7021#2 ----CTCGTGCA-GAATCCT---------------------------------------- 339 consensus_7021#0 ATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATA 420 * * ** * consensus_7021#1 CTGATGAAGTACCGGTTCACACTGT-ATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGC 446 consensus_7021#2 ------------------------------------------------------------ consensus_7021#0 CTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGG 480 consensus_7021#1 AAGAAGGTAAAA---ACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGG 503 consensus_7021#2 ------------------------------------------------------------ consensus_7021#0 AAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCT 540 consensus_7021#1 AAACA-------AGAATAGCATTGCAGGAATTG-CAATGCAAGGAGCGGAATTCAAAACT 555 consensus_7021#2 ------------------------------------------------------------ consensus_7021#0 TAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGT 600 consensus_7021#1 ACCCATAACCGCATATCATCAAGAACCCCTTGTCTCGTCCTC------------------ 597 consensus_7021#2 ------------------------------------------------------------ consensus_7021#0 GCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAA 660 consensus_7021#1 ------------------------------------------------------------ consensus_7021#2 ------------------------------------------------------------ consensus_7021#0 GGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTG 720 consensus_7021#1 -------------------------------------------- consensus_7021#2 -------------------------------------------- consensus_7021#0 TATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATG 764 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||