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Oryza sativa
cluster # 7027 cluster # 7027       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7027#0 length = 1181 sequences # 4  

consensusID : consensus_7027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1181
fasta sequence
                              [GTATCACATCTTCTGGATTATATCAATCCAGATGATGAACTCAAGGCTAAGGAAATGCAAAAGAAACAAGCCCGCGCTAAGATCAAAGGTCGTGCCGGGCAAAATCCATCTGAAGTAGTCGATGATGAAGATCAAAGGAGCCCACCACCTAAAAGTGACCATTCATTAATTGAGAAGGAAAGTTCTGAAGTCAAAGAGAATGGAACGTTTATTCAGAAAGAGAAACTGAAAGAAGAAATACCAGGTAACACCTTAAGCCGTATACCTCAAGATGATTTTACTGAAGAGTACACGTCGGATGAAGGGTGGCAAGAAGCTGTTCCAAAGGGACGATCCACTGGGAACCGCAAAACTGGTGTAAGTGCAAGGAGGCCGAATCTAGCAAAGATCAACACAAATGCACTAAACAATACTGAGAATGGAAGATACAAAGGAAGAGCTCCATCAAACTTCTCTTCCCCTCGAGTTTTACCTAGTGAGGCTGTAACTGCAAAGAAACTGGTGAAGAGTTCAAGCTTCAATTCCAAACCAGGCAGCCCTGCTATATCATCAAACAGTGCGGAGAATTCTTCCAATCCCAACTCTCTGTCAGCAAGCCCTGCCACCACCCCAGCAGCTGCCAAGGCAGTCCTGTCTTCAGCACCAATTGCCAGTCAAACAGTAAGGAAGGCACTATCATACAAGGAAGTTGCAATAGCTGCACCAGGGACTCTTGTCAAAGCATTGAATGATGCACAAA-CGGAGGAAAAGGATGCAACCGATGCAGGTGCAAATATTGAAACTGCTAAGGCCCCAAAGGAAAGCAATGGTCACCTTTCTAAAGAGAAAGATGGAGCTGTTCAAGTGTCACCAAAAGATAGTACTTCCCAAGGATCCAAAGAAACTGGTGAAGGCAAATCTTCCAATCCTGATGACGAACAAACCGTTGTTTTGGCTGGATCAAATCAATCAGAGACACAACCTGAGAAGAAAAGAGATCTTGTAGCCTCAGATGTATCATCGTCATCTCAATCATTAACAACAGCAACTGAAGCTAATGCCCCAAACGAAGTAGCATCTATGGTGACTGAGGCAAATGATTCTTCCTCCAATGATGATGAAAGAGATGCAGGAGAGGATGCTCAAGAACAGATGTCTAGTGGAGGCGAAAATGAGAAATCTTCACCATCTGAAAGTGAAAA]

[+] EMBL CB649660             [GTATCACATCTTCTGGATTATATCAATCCAGATGATGAACTCAAGGCTAAGGAAATGCAAAAGAAACAAGCCCGCGCTAAGATCAAAGGTCGTGCCGGGCAAAATCCATCTGAAGTAGTCGATGATGAAGATCAAAGGAGCCCACCACCTAAAAGTGACCATTCATTAATTGAGAAGGAAAGTTCTGAAGTCAAAGAGAATGGAACGTTTATTCAGAAAGAGAAACTGAAAGAAGAAATACCAGGTAACACCTTAAGCCGTATACCTCAAGATGATTTTACTGAAGAGTACACGTCGGATGAAGGGTGGCAAGAAGCTGTTCCAAAGGGACGATCCACTGGGAACCGCAAAACTGGTGTAAGTGCAAGGAGGCCGAATCTAGCAAAGATCAACACAAATGCACTAAACAATACTGAGAATGGAAGATACAAAGGAAGAGCTCCATCAAACTTCTCTTCCCCTCGAGTTTTACCTAGTGAGGCTGTAACTGCAAAGAAACTGGTGAAGAGTTCAAGCTTCAATTCCAAACCAGGCAGCCCTGCTATATCATCAAACAGTGCGGAGAATTCTTCCAATCCCAACTCTCTGTCAGCAAGCCCTGCCACCACCCCAGCAGCTGCCAAGGCAGTCCTGTCTTCAGCACCAATTGCCAGTCAAACAGTAAGGAAGGCACTATCATACAAGGAAGTTGCAATAGCTGCACCAGGGACTCTTGTCAAAGCATTGAATGATGCACAAANCGGAGGAAAAGGATGCAACCGATGCAGGTGCAAATATTGAAACTGCTAAGGCCCCAAAGGAAAGCAA                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB635717             [                                                                                                                                                            GACCATTCATTAATTGAGAAGGAAAGTTCTGAAGTCAAAGAGAATGGAACGTTTATTCAGAAAGAGAAACTGAAAGAAGAAATACCAGGTAACACCTTAAGCCGTATACCTCAAGATGATTTTACTGAAGAGTACACGTCGGATGAAGGGTGGCAAGAAGCTGTTCCAAAGGGACGATCCACTGGGAACCGCAAAACTGGTGTAAGTGCAAGGAGGCCGAATCTAGCAAAGATCAACACAAATGCACTAAACAATACTGAGAATGGAAGATACAAAGGAAGAGCTCCATCAAACTTCTCTTCCCCTCGAGTTTTACCTAGTGAGGCTGTAACTGCAAAGAAACTGGTGAAGAGTTCAAGCTTCAATTCCAAACCAGGCAGCCCTGCTATATCATCAAACAGTGCGGAGAATTCTTCCAATCCCAACTCTCTGTCAGCAAGCCCTGCCACCACCCCAGCAGCTGCCAAGGCAGTCCTGTCTTCAGCACCAATTGCCAGTCAAACAGTAAGGAAGGCACTATCATACAAGGAAGTTGCAATAGCTGCACCAGGGACTCTTGTCAAAGCATTGAATGATGCACAAA CGGAGGAAAAGGATGCAACCGATGCAGGTGCAAATATTGAAACTGCTAAGGCCCCAAAGGAAAGCAATGGTCACCTTTCTAAAGAGAAAGATGGAGCTGTTCAAGTGTCACCAAAAGATAGTACTTCCCAAGGATCCAAAGAAACTGGTGAAGGCAAATCTTCCA                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB628792             [                                                                                                                                                              CCATTCATTAATTGAGAAGGAAAGTTCTGAAGTCAAAGAGAATGGAACGTTTATTCAGAAAGAGAAACTGAAAGAAGAAATACCAGGTAACACCTTAAGCCGTATACCTCAAGATGATTTTACTGAAGAGTACACGTCGGATGAAGGGTGGCAAGAAGCTGTTCCAAAGGGACGATCCACTGGGAACCGCAAAACTGGTGTAAGTGCAAGGAGGCCGAATCTAGCAAAGATCAACACAAATGCACTAAACAATACTGAGAATGGAAGATACAAAGGAAGAGCTCCATCAAACTTCTCTTCCCCTCGAGTTTTACCTAGTGAGGCTGTAACTGCAAAGAAACTGGTGAAGAGTTCAAGCTTCAATTCCAAACCAGGCAGCCCTGCTATATCATCAAACAGTGCGGAGAATTCTTCCAATCCCAACTCTCTGTCAGCAAGCCCTGCCACCACCCCAGCAGCTGCCAAGGCAGTCCTGTCTTCAGCACCAATTGCCAGTCAAACAGTAAGGAAGGCACTATCATACAAGGAAGTTGCAATAGCTGCACCAGGGACTCTTGTCAAAGCATTGAATGATGCACAAA CGGAGGAAAAGGATGCAACCGATGCAGGTGCAAATATTGAAACTGCTAAGGCCCCAAAGGAAAGCAATGGTCACCTTTCTAAAGAGAAAGATGGAGCTGTTCAAGTGTCACCAAAAGATAGTACTTCCCAAGGATCCAAAGAAACTGGTGAAGGCAAATCTTCCAATCCTGATGACGAACAAACCGTTGTT                                                                                                                                                                                                                                                           ]
[+] EMBL CB623901             [                                                                                                                                                                                                                                                                                                                                                                                                               GCACTAAACAATACTGAGAATGGAAGATACAAAGGAAGAGCTCCATCAAACTTCTCTTCCCCTCGAGTTTTACCTAGTGAGGCTGTAACTGCAAAGAAACTGGTGAAGAGTTCAAGCTTCAATTCCAAACCAGGCAGCCCTGCTATATCATCAAACAGTGCGGAGAATTCTTCCAATCCCAACTCTCTGTCAGCAAGCCCTGCCACCACCCCAGCAGCTGCCAAGGCAGTCCTGTCTTCAGCACCAATTGCCAGTCAAACAGTAAGGAAGGCACTATCATACAAGGAAGTTGCAATAGCTGCACCAGGGACTCTTGTCAAAGCATTGAATGATGCACAAA CGGAGGAAAAGGATGCAACCGATGCAGGTGCAAATATTGAAACTGCTAAGGCCCCAAAGGAAAGCAATGGTCACCTTTCTAAAGAGAAAGATGGAGCTGTTCAAGTGTCACCAAAAGATAGTACTTCCCAAGGATCCAAAGAAACTGGTGAAGGCAAATCTTCCAATCCTGATGACGAGCAAACCGTTGTTTTGGCTGGATCAAATCAATCAGAGACACAACCTGAGAAGAAAAGAGATCTTGTAGCCTCAGATGTATCATCGTCATCTCAATCATTAACAACAGCAACTGAAGCTAATGCCCCAAACGAAGTAGCATCTATGGTGACTGAGGCAAATGATTCTTCCTCCAATGATGATGAAAGAGATGCAGGAGAGGATGCTCAAGAACAGATGTCTAGTGGAGGCGAAAATGAGAAATCTTCACCATCTGAAAGTGAAAA]


>consensus_7027#0 GTATCACATCTTCTGGATTATATCAATCCAGATGATGAACTCAAGGCTAAGGAAATGCAA AAGAAACAAGCCCGCGCTAAGATCAAAGGTCGTGCCGGGCAAAATCCATCTGAAGTAGTC GATGATGAAGATCAAAGGAGCCCACCACCTAAAAGTGACCATTCATTAATTGAGAAGGAA AGTTCTGAAGTCAAAGAGAATGGAACGTTTATTCAGAAAGAGAAACTGAAAGAAGAAATA CCAGGTAACACCTTAAGCCGTATACCTCAAGATGATTTTACTGAAGAGTACACGTCGGAT GAAGGGTGGCAAGAAGCTGTTCCAAAGGGACGATCCACTGGGAACCGCAAAACTGGTGTA AGTGCAAGGAGGCCGAATCTAGCAAAGATCAACACAAATGCACTAAACAATACTGAGAAT GGAAGATACAAAGGAAGAGCTCCATCAAACTTCTCTTCCCCTCGAGTTTTACCTAGTGAG GCTGTAACTGCAAAGAAACTGGTGAAGAGTTCAAGCTTCAATTCCAAACCAGGCAGCCCT GCTATATCATCAAACAGTGCGGAGAATTCTTCCAATCCCAACTCTCTGTCAGCAAGCCCT GCCACCACCCCAGCAGCTGCCAAGGCAGTCCTGTCTTCAGCACCAATTGCCAGTCAAACA GTAAGGAAGGCACTATCATACAAGGAAGTTGCAATAGCTGCACCAGGGACTCTTGTCAAA GCATTGAATGATGCACAAACGGAGGAAAAGGATGCAACCGATGCAGGTGCAAATATTGAA ACTGCTAAGGCCCCAAAGGAAAGCAATGGTCACCTTTCTAAAGAGAAAGATGGAGCTGTT CAAGTGTCACCAAAAGATAGTACTTCCCAAGGATCCAAAGAAACTGGTGAAGGCAAATCT TCCAATCCTGATGACGAACAAACCGTTGTTTTGGCTGGATCAAATCAATCAGAGACACAA CCTGAGAAGAAAAGAGATCTTGTAGCCTCAGATGTATCATCGTCATCTCAATCATTAACA ACAGCAACTGAAGCTAATGCCCCAAACGAAGTAGCATCTATGGTGACTGAGGCAAATGAT TCTTCCTCCAATGATGATGAAAGAGATGCAGGAGAGGATGCTCAAGAACAGATGTCTAGT GGAGGCGAAAATGAGAAATCTTCACCATCTGAAAGTGAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)