cluster # 7029

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Oryza sativa
cluster # 7029 cluster # 7029 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7029#0 length = 1333 sequences # 2

consensus_7029#1 length = 338 sequences # 2

consensusID : consensus_7029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1333
fasta sequence

                              [AACATTACTTTACTGTGATAGATTGCCAATCGCAAAATATAACATGTGTATGTAATTTTCAATTTACAACTCCAATACCACCGTAAAATTTGATACAAGAAAAATTAACATGCTTCTGCATTCGACAAATGCAAACTGGAACCATCTACAAGAGAAGAATGAACATCCAACAGTACAATAATTGCATTAGCCTGCAGTGGAAATAGCACTATAATGTGCAATTCAAAAATATCAACACAATGTGCAATTTTGAATTGATTATCTTTATTTACCAGGGCATAAAAAAATTTCTTTTACCTATGGTTTCCCTAATAACTGCATTTGGTTTATTTTAAAATTGCACAAACATATAAACTGCAAGACATAACGATGAGCACTTCGCGAAGCATACAAACTACAAATCGCAATCAACTAACTGACACCTGAACCAAAATCAATTCACATACAGGCCTCACCAACATACTGCATGGCACAATGGGACAAGTAAAGATGTTCATGAAGCTGAGATCACTAAACCAGTGCACGGACCAAAAAGCAAACCGAACAGCTTAAAAAAATGACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCAACTCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGCGAACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGAGCATGGAACCCTAATTTAGCCGCCGCACAAATCCCCCTCTTCGAATCATTAATAATACAGACAGAACGAGAGGGGAATAAACGCGTGGTGAATCGCACGCGAGCCGACCCCCATCCCGTCAAAATCAAATCCAGTCAACCACTCCGGAAAAAAGAATCTATCTGTCTAACCAAAAAAAAGGAAAACCACTGGAATTTTAACCTAAATCCACCAACCCTCCTCCCCGTCTTAATCCCTCCGCGGATTAGCAATGCAAACCCCTCAAATAATAAATAACCGAGCAAGTAGCAATCTCCAGGAAATATTTTGATTGGCCGGGACGAACCGCTCGAGCCACTGGAGATCGTAGTCGTACCGTGCACGGAAGCGGAATCCACAGCTCCTGCTTGATCCCTCCTGCGCTTCCTCTTCCCCTCGTGGCGAGGATGATGATGATGATGATGATGACGGCGACGACGACCGCGGCGATGATTCATTTACGAATTCTTTTTCTGCGGTTTTTTTTTCCT]

[+] EMBL CB624091             [AACATTACTTTACTGTGATAGATTGCCAATCGCAAAATATAACATGTGTATGTAATTTTCAATTTACAACTCCAATACCACCGTAAAATTTGATACAAGAAAAATTAACATGCTTCTGCATTCGACAAATGCAAACTGGAACCATCTACAAGAGAAGAATGAACATCCAACAGTACAATAATTGCATTAGCCTGCAGTGGAAATAGCACTATAATGTGCAATTCAAAAATATCAACACAATGTGCAATTTTGAATTGATTATCTTTATTTACCAGGGCATAAAAAAATTTCTTTTACCTATGGTTTCCCTAATAACTGCATTTGGTTTATTTTAAAATTGCACAAACATATAAACTGCAAGACATAACGATGAGCACTTCGCGAAGCATACAAACTACAAATCGCAATCAACTAACTGACACCTGAACCAAAATCAATTCACATACAGGCCTCACCAACATACTGCATGGCACAATGGGACAAGTAAAGATGTTCATGAAGCTGAGATCACTAAACCAGTGCACGGACCAAAAAGCAAACCGAACAGCTTAAAAAAATGACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCAACTCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGCGAACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGCTCGATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB624090             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AATGACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCAACTCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGCGAACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGAGCATGGAACCCTAATTTAGCCGCCGCACAAATCCCCCTCTTCGAATCATTAATAATACAGACAGAACGAGAGGGGAATAAACGCGTGGTGAATCGCACGCGAGCCGACCCCCATCCCGTCAAAATCAAATCCAGTCAACCACTCCGGAAAAAAGAATCTATCTGTCTAACCAAAAAAAAGGAAAACCACTGGAATTTTAACCTAAATCCACCAACCCTCCTCCCCGTCTTAATCCCTCCGCGGATTAGCAATGCAAACCCCTCAAATAATAAATAACCGAGCAAGTAGCAATCTCCAGGAAATATTTTGATTGGCCGGGACGAACCGCTCGAGCCACTGGAGATCGTAGTCGTACCGTGCACGGAAGCGGAATCCACAGCTCCTGCTTGATCCCTCCTGCGCTTCCTCTTCCCCTCGTGGCGAGGATGATGATGATGATGATGATGACGGCGACGACGACCGCGGCGATGATTCATTTACGAATTCTTTTTCTGCGGTTTTTTTTTCCT]




>consensus_7029#0
AACATTACTTTACTGTGATAGATTGCCAATCGCAAAATATAACATGTGTATGTAATTTTC
AATTTACAACTCCAATACCACCGTAAAATTTGATACAAGAAAAATTAACATGCTTCTGCA
TTCGACAAATGCAAACTGGAACCATCTACAAGAGAAGAATGAACATCCAACAGTACAATA
ATTGCATTAGCCTGCAGTGGAAATAGCACTATAATGTGCAATTCAAAAATATCAACACAA
TGTGCAATTTTGAATTGATTATCTTTATTTACCAGGGCATAAAAAAATTTCTTTTACCTA
TGGTTTCCCTAATAACTGCATTTGGTTTATTTTAAAATTGCACAAACATATAAACTGCAA
GACATAACGATGAGCACTTCGCGAAGCATACAAACTACAAATCGCAATCAACTAACTGAC
ACCTGAACCAAAATCAATTCACATACAGGCCTCACCAACATACTGCATGGCACAATGGGA
CAAGTAAAGATGTTCATGAAGCTGAGATCACTAAACCAGTGCACGGACCAAAAAGCAAAC
CGAACAGCTTAAAAAAATGACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCAAC
TCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGCGA
ACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCCCA
AAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGCTC
GATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGAGCATGGAACCCTAATT
TAGCCGCCGCACAAATCCCCCTCTTCGAATCATTAATAATACAGACAGAACGAGAGGGGA
ATAAACGCGTGGTGAATCGCACGCGAGCCGACCCCCATCCCGTCAAAATCAAATCCAGTC
AACCACTCCGGAAAAAAGAATCTATCTGTCTAACCAAAAAAAAGGAAAACCACTGGAATT
TTAACCTAAATCCACCAACCCTCCTCCCCGTCTTAATCCCTCCGCGGATTAGCAATGCAA
ACCCCTCAAATAATAAATAACCGAGCAAGTAGCAATCTCCAGGAAATATTTTGATTGGCC
GGGACGAACCGCTCGAGCCACTGGAGATCGTAGTCGTACCGTGCACGGAAGCGGAATCCA
CAGCTCCTGCTTGATCCCTCCTGCGCTTCCTCTTCCCCTCGTGGCGAGGATGATGATGAT
GATGATGATGACGGCGACGACGACCGCGGCGATGATTCATTTACGAATTCTTTTTCTGCG
GTTTTTTTTTCCT

consensusID : consensus_7029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 338
fasta sequence

                              [CAATCTCCCAGACGAGATCAGCTCTGGGAATGGATATGAAAGCCGTGGTCGCTTCACCTCGGGCACCAGACCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCACCGCAAGCAGCGTGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATCACATCTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA]

[-] EMBL CB641247             [CAATCTCCCAGACGAGATCAGCTCTGGGAATGGATATGAAAGCCGTGGTCGCTTCACCTCGGGCACCAGACCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCACCGCAAGCAGCGTGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATCACATCTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA]
[-] EMBL CB641254             [CAATCTCCCAGACGAGATCAGCTCTGGGAATGGATATGAAAGCCGTGGTCGCTTCACCTCGGGCACCAGACCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCACCGCAAGCAGCGTGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATCACATCTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA]




>consensus_7029#1
CAATCTCCCAGACGAGATCAGCTCTGGGAATGGATATGAAAGCCGTGGTCGCTTCACCTC
GGGCACCAGACCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCACCGCAAG
CAGCGTGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATC
ACATCTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGC
AGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGCAGGATGCGCTCGATTTG
TGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7029#0      AACATTACTTTACTGTGATAGATTGCCAATCGCAAAATATAACATGTGTATGTAATTTTC 60
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      AATTTACAACTCCAATACCACCGTAAAATTTGATACAAGAAAAATTAACATGCTTCTGCA 120
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TTCGACAAATGCAAACTGGAACCATCTACAAGAGAAGAATGAACATCCAACAGTACAATA 180
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      ATTGCATTAGCCTGCAGTGGAAATAGCACTATAATGTGCAATTCAAAAATATCAACACAA 240
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TGTGCAATTTTGAATTGATTATCTTTATTTACCAGGGCATAAAAAAATTTCTTTTACCTA 300
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TGGTTTCCCTAATAACTGCATTTGGTTTATTTTAAAATTGCACAAACATATAAACTGCAA 360
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      GACATAACGATGAGCACTTCGCGAAGCATACAAACTACAAATCGCAATCAACTAACTGAC 420
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      ACCTGAACCAAAATCAATTCACATACAGGCCTCACCAACATACTGCATGGCACAATGGGA 480
consensus_7029#1      --------------------------------------CAATCTCCCAGACGAGATCAGC 22
                                                            **  ** *  * *   **  * 

consensus_7029#0      CAAGTAAAGATGTTCATGAA-GCTGAGATCACTAAACCAGTGCACGGACCAAAAAGCAAA 539
consensus_7029#1      T--CTGGGAATGGATATGAAAGCCGTGGTCGCTTCACC----------TCGGGCACCAGA 70
                          *    ***   ***** ** * * ** **  ***           *    * ** *

consensus_7029#0      CCGAACAGCTTAAAAAAAT-GACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCA 598
consensus_7029#1      CCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCA-----CCGCAAGCAGCG 125
                      **     ****       * * *** **   *   * **  **     * * ** * ** 

consensus_7029#0      ACTCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGC 658
consensus_7029#1      -TGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATCACAT 184
                         *  ***** *     *        **  ** * *      * *   *  ** **   

consensus_7029#0      GAACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCC 718
consensus_7029#1      CTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGCAGCC 244
                         ** **   *    * ** * **   *  *****************************

consensus_7029#0      CAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGC 778
consensus_7029#1      CAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGG------------CAGGATGCGC 292
                      **************************************            **********

consensus_7029#0      TCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGAGCATGGAACCCTAA 838
consensus_7029#1      TCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA-------------- 338
                      **********************************************              

consensus_7029#0      TTTAGCCGCCGCACAAATCCCCCTCTTCGAATCATTAATAATACAGACAGAACGAGAGGG 898
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      GAATAAACGCGTGGTGAATCGCACGCGAGCCGACCCCCATCCCGTCAAAATCAAATCCAG 958
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TCAACCACTCCGGAAAAAAGAATCTATCTGTCTAACCAAAAAAAAGGAAAACCACTGGAA 1018
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TTTTAACCTAAATCCACCAACCCTCCTCCCCGTCTTAATCCCTCCGCGGATTAGCAATGC 1078
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      AAACCCCTCAAATAATAAATAACCGAGCAAGTAGCAATCTCCAGGAAATATTTTGATTGG 1138
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      CCGGGACGAACCGCTCGAGCCACTGGAGATCGTAGTCGTACCGTGCACGGAAGCGGAATC 1198
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      CACAGCTCCTGCTTGATCCCTCCTGCGCTTCCTCTTCCCCTCGTGGCGAGGATGATGATG 1258
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      ATGATGATGATGACGGCGACGACGACCGCGGCGATGATTCATTTACGAATTCTTTTTCTG 1318
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      CGGTTTTTTTTTCCT 1333
consensus_7029#1      ---------------