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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1390 fasta sequence
[CTCACCACAGGGCACGATACCGCCGTCCGTTCGCGGCGCGACCCTTCGCCGCCGCGCCGCCGCGCCGGCGCTATGCAGCGCCTCCAAAAGCAGCTCCTTCCCGCCCTGCGCGCCGCCTTCCCTCTCCCTGCCTCCCACTTCAGCAGCCGCCTTCTCTCCGCCTCCACCGCCACCTTATCCCCCACCCGCTTCGTCGACGAGGACGCCCTCGTCGCCGCCTGCGGCCTCACCGGAGCCGAAGCCCTCAAGGCCTCGAAGCGTCTACAGAAGGTACCCTCAAATCTAGACGCCGCCCTCACCTTCCTCGCCTTTCTCGCCGACTTCCGCCTCTCCAAAGACGACATCGCCGCCGCAAGCTCACGGTACCCGCGGTTCCTCCATCTCAAGGTGGACGAAACCCTAACCTCCCAAGTAGCCCGGCTCCGGGATATCGGCCTATCCACTCCCGAGATTGGCCGCCTCATTACCATCGCCCCCTGCATCCTCTCCAATCCTCGCACGATCTCCCGCCTTGAATTCTACCTCTCCTTTTTGGGCTCCTACCCCAGGGTGCACTCCGCCCTTCGGAACAATTCCTCCCTTCTACGGCGAAACAACATCGAGAGTGAGGTCAAGCCCAACATTGCATTCCTGGAGCAGTGCGGCCTAACTACTTGTGATATTGCCAAGATCCTCATGTCTGGCTCTAGGATACTCATTATGCAGCCAGAGCATGTCAAGGAAATTGTGGCGTGTGCAGACAAGTTCGGTATGCCCCGTGAGTCAGCTGGTTTCAGGTATGCCCTGATGGCTGTTACCGGCATCAGCCCAGTGAGGGTCAGCGC-AAACTTGATTTCTTGAGGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGCGGTGTCTAGGTTTCCACTAATCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTGGGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAACGGCTGATGCCGCGTTATCATGTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAGACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAGCTTTTTTAAGAAGTTCCTTCTCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGAAAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGATAATGTTCTGCATTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACAAACATCTAATTTTAGTGCACTCTTGTTCTCATTTTAAAAAAAAAA]
[+] EMBL AK103427 [CTCACCACAGGGCACGATACCGCCGTCCGTTCGCGGCGCGACCCTTCGCCGCCGCGCCGCCGCGCCGGCGCTATGCAGCGCCTCCAAAAGCAGCTCCTTCCCGCCCTGCGCGCCGCCTTCCCTCTCCCTGCCTCCCACTTCAGCAGCCGCCTTCTCTCCGCCTCCACCGCCACCTTATCCCCCACCCGCTTCGTCGACGAGGACGCCCTCGTCGCCGCCTGCGGCCTCACCGGAGCCGAAGCCCTCAAGGCCTCGAAGCGTCTACAGAAGGTACCCTCAAATCTAGACGCCGCCCTCACCTTCCTCGCCTTTCTCGCCGACTTCCGCCTCTCCAAAGACGACATCGCCGCCGCAAGCTCACGGTACCCGCGGTTCCTCCATCTCAAGGTGGACGAAACCCTAACCTCCCAAGTAGCCCGGCTCCGGGATATCGGCCTATCCACTCCCGAGATTGGCCGCCTCATTACCATCGCCCCCTGCATCCTCTCCAATCCTCGCACGATCTCCCGCCTTGAATTCTACCTCTCCTTTTTGGGCTCCTACCCCAGGGTGCACTCCGCCCTTCGGAACAATTCCTCCCTTCTACGGCGAAACAACATCGAGAGTGAGGTCAAGCCCAACATTGCATTCCTGGAGCAGTGCGGCCTAACTACTTGTGATATTGCCAAGATCCTCATGTCTGGCTCTAGGATACTCATTATGCAGCCAGAGCATGTCAAGGAAATTGTGGCGTGTGCAGACAAGTTCGGTATGCCCCGTGAGTCAGCTGGTTTCAGGTATGCCCTGATGGCTGTTACCGGCATCAGCCCAGTGAGGGTCAGCGC AAACTTGATTTCTTGAGGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGCGGTGTCTAGGTTTCCACTAATCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTGGGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAACGGCTGATGCCGCGTTATCATGTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAGACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAGCTTTTTTAAGAAGTTCCTTCTCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGAAAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGATAATGTTCTGCATTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACAAACATCTAATTTTAGTGCACTCTTG ]
[+] EMBL AK060034 [ GATACCGCCGTCCGTTCGCGGCGCGACCCTTCGCCGCCGCGCCGCCGCGCCGGCGCTATGCAGCGCCTCCAAAAGCAGCTCCTTCCCGCCCTGCGCGCCGCCTTCCCTCTCCTTGCCTCCCACTTCAGCAGCCGCCTTCTCTCCGCCTCCACCGCCACCTTATCCCCCACCCGCTTCGTCGACGAGGACGCCCTCGTCGCCGCCTGCGGCCTCACCGGAGCCGAAGCCCTCAAGGCCTCGAAGCGTCTACAGAAGGTACCCTCAAATCTAGACGCCGCCCTCACCTTCCTCGCCTTTCTCGCCGACTTCCGCCTCTCCAAAGACGACATCGCCGCCGCAAGCTCACGGTACCCGCGGTTCCTCCATCTCAAGGTGGACGAAACCCTAACCTCCCAAGTAGCCCGGCTCCGGGATATCGGCCTATCCACTCCCGAGATTGGCCGCCTCATTACCATCGCCCCCTGCATCCTCTCCAATCCTCGCACGATCTCCCGCCTTGAATTCTACCTCTCCTTTTTGGGCTCCTACCCCAGGGTGCACTCCGCCCTTCGGAACAATTCCTCCCTTCTACGGCGAAACAACATCGAGAGTGAGGTCAAGCCCAACATTGCATTCCTGGAGCAGTGCGGCCTAACTACTTGTGATATTGCCAAGATCCTCATGTCTGGCTCTAGGATACTCATTATGCAGCCAGAGCATGTCAAGGAAATTGTGGCGTGTGCAGACAAGTTCGGTATGCCCCGTGAGTCAGCTGGTTTCAGGTATGCCCTGATGGCTGTTACCGGCATCAGCCCAGTGAGGGTCAGCGCAAAACTTGATTTCTTGAGGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGCGGTGTCTAGGTTTCCACTAATCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTGGGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAACGGCTGATGCCGCGTTATCATGTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAGACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAGCTTTTTTAAGAAGTTCCTTCTCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGAAAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGATAATGTTCTGCATTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACAAACATCTAATTTTAGTGCACTCTTG ]
[+] EMBL BI799609 [ ccGGAACTTGATAATGTTCTGCCTTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACCAACATCTAATTTTAGTGCCCTCTTGTTCTCATTTTAAAAAAAAAA]
consensusID : consensus_7030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence
[AATGTTCGGCCTTGTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGGGATTTCATCTGGGCTTTTTGAGAACCAAACATCTAATTGTTAGGTCCACCTGCGGTGGTTGCTCACGTGTTTAAAAAAA]
[+] EMBL BI803884 [AATGTTCGGCCTTGTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGGGATTTCATCTGGGCTTTTTGAGAACCAAACATCTAATTGTTAGGTCCACCTGCGGTGGTTGCTCACGTGTTTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7030#0 CTCACCACAGGGCACGATACCGCCGTCCGTTCGCGGCGCGACCCTTCGCCGCCGCGCCGC 60
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 CGCGCCGGCGCTATGCAGCGCCTCCAAAAGCAGCTCCTTCCCGCCCTGCGCGCCGCCTTC 120
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 CCTCTCCCTGCCTCCCACTTCAGCAGCCGCCTTCTCTCCGCCTCCACCGCCACCTTATCC 180
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 CCCACCCGCTTCGTCGACGAGGACGCCCTCGTCGCCGCCTGCGGCCTCACCGGAGCCGAA 240
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 GCCCTCAAGGCCTCGAAGCGTCTACAGAAGGTACCCTCAAATCTAGACGCCGCCCTCACC 300
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 TTCCTCGCCTTTCTCGCCGACTTCCGCCTCTCCAAAGACGACATCGCCGCCGCAAGCTCA 360
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 CGGTACCCGCGGTTCCTCCATCTCAAGGTGGACGAAACCCTAACCTCCCAAGTAGCCCGG 420
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 CTCCGGGATATCGGCCTATCCACTCCCGAGATTGGCCGCCTCATTACCATCGCCCCCTGC 480
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 ATCCTCTCCAATCCTCGCACGATCTCCCGCCTTGAATTCTACCTCTCCTTTTTGGGCTCC 540
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 TACCCCAGGGTGCACTCCGCCCTTCGGAACAATTCCTCCCTTCTACGGCGAAACAACATC 600
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 GAGAGTGAGGTCAAGCCCAACATTGCATTCCTGGAGCAGTGCGGCCTAACTACTTGTGAT 660
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 ATTGCCAAGATCCTCATGTCTGGCTCTAGGATACTCATTATGCAGCCAGAGCATGTCAAG 720
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 GAAATTGTGGCGTGTGCAGACAAGTTCGGTATGCCCCGTGAGTCAGCTGGTTTCAGGTAT 780
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 GCCCTGATGGCTGTTACCGGCATCAGCCCAGTGAGGGTCAGCGCAAACTTGATTTCTTGA 840
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 GGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGCGGTGTCTAGGTTTCCACTAA 900
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 TCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTG 960
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 GGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAAC 1020
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 GGCTGATGCCGCGTTATCATGTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAG 1080
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 ACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAGCTTTTTTAAGAAGTTCCTTC 1140
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 TCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGA 1200
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 AAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGAT 1260
consensus_7030#1 ------------------------------------------------------------
consensus_7030#0 AATGTTCTGCATTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGT 1320
consensus_7030#1 AATGTTCGGCCTTGTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGG 60
******* ** ** *********************************************
consensus_7030#0 GATTTCATCTGTGCTTTTTGAGA--CAAACATCTAATTTT--AGTGCACTC-------TT 1369
consensus_7030#1 GATTTCATCTGGGCTTTTTGAGAACCAAACATCTAATTGTTAGGTCCACCTGCGGTGGTT 120
*********** *********** ************* * ** *** **
consensus_7030#0 GTTCTCATTTTAAAAAAAAAA 1390
consensus_7030#1 GCTCACGTGTTTAAAAAAA-- 139
* ** * * ** *******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||