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Oryza sativa
cluster # 7032 cluster # 7032       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7032#0 length = 588 sequences # 2  
consensus_7032#1 length = 533 sequences # 2  

consensusID : consensus_7032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 588
fasta sequence
                              [TATGTGTTTCCTCTATATTTAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAACATCCCGCGCTTTACTGAAAGCCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCAAAAGCACAGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGATGAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCCAGTCATGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGGTGTGAAACTAGACAAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BU572376             [TATGTGTTTCCTCTATATTTAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAACATCCCGCGCTTTACTGAAAGCCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCAAAAGCACAGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGATGAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCCAGTCATGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGGTGTGAAACTAGACAAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCAAATAAATAAGTGTGGTGTAACTTTTTATATA                                                                                         ]
[+] EMBL AU095236             [                                                                                                                                                                                                                                                                                                                                                                                        GCTAGTCTATACCNTGTATNTTTATTGTTGTGAAACTAGACAAAATTGTGTGTGCTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_7032#0 TATGTGTTTCCTCTATATTTAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAA GATACTTCGGAACTGCAAACATCCCGCGCTTTACTGAAAGCCATCCCATCTAGAGAAGCC GGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCAAAAGCAC AGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGAT GAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCCA GTCATGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCAAT GAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGGTGTGAAACTAGACAAA ATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCAAATAAATAAGTG TGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATNTAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_7032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 533
fasta sequence
                              [CTGTCTTCCTC-AAG-TGGA-TTA-TG-CATGA-TTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAAAAACCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGA-TATAGTGGTCGGAGTTGGCCCATCTGACCCAAA-GCACCAGAGATGTGCAGATCTTGTTTGA-CGCGC-TCATCATGTTTGTCAATGGCGTTGAGCGAGATG-AACAGGAGTGGAAGAAACTTTTCG-TTGAAGCTGGATTTAG-TAGCTACAAGATCATGCCAGTCACTGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGT-TACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCTACATCA-TGTATGTTTATTGTTGTG-AAACTAGACCAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATT-GTGATCATTCCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTA-CTGTGGAATATATATGCTTGAATCTAAAAAAAA]

[+] EMBL BQ908479             [CTGTCTTCCTC AAG TGGA TTA TG CATGA TTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAAAAACCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGA TATAGTGGTCGGAGTTGGCCCATCTGACCCAAA GCACCAGAGATGTGCAGATCTTGTTTGA CGCGC TCATCATGTTTGTCAATGGCGTTGAGCGAGATG AACAGGAGTGGAAGAAACTTTTCG TTGAAGCTGGATTTAG TAGCTACAAGATCATGCCAGTCACTGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGT TACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCTACATCA TGTATGTTTATTGTTGTG AAACTAGACCAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATT GTGATCATTCCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTA CTGTGGAATATATATGCTTGAATCTAAAAAAAA]
[+] EMBL BM038833             [  ctttcCCTCAAAGTTGGATTTATTGNCATGANTTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAAAAGCCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGACTATAGTGGTCGGAGTTGGCCCATCTGACCCAAACGCACCAGAGATGTGCAGATCTTGTTTGAGCGCGCGTCATCATGTTTGTCAATGGCGTTGAGCGAGATGCAACAGGAGTGGAAGAAACTTTTCGCTTGAAGCTGGATTTAGCTAGCTACAAGATCATGCCAGTCA TGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTGTACTCATTCTTCCATGA CCGACGTCCGTTGGCTAGTCTACATCAGNGTATGTTTATTGTTGTGCAAACTAGA CAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGGTGATCATTCC  AATAAATAAGTGTGGTGTAACTTTTNATATATAATGGACCACATCCCGCGCTTTACCTGTGGAAaaaaaaaa                 ]


>consensus_7032#1 CTGTCTTCCTCAAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAAGATACTTC GGAACTGCAAAAAACCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGATAT AGTGGTCGGAGTTGGCCCATCTGACCCAAAGCACCAGAGATGTGCAGATCTTGTTTGACG CGCTCATCATGTTTGTCAATGGCGTTGAGCGAGATGAACAGGAGTGGAAGAAACTTTTCG TTGAAGCTGGATTTAGTAGCTACAAGATCATGCCAGTCACTGGGCTTCAGGTCAATCATC GAGGTCTATCCTTGAACTTGTTACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCT ACATCATGTATGTTTATTGTTGTGAAACTAGACCAAATTGTGTGTGTTCGCTTGGGTTGT TTGTGATTAATTGTGATCATTCCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAAT GGACAACATCCCGCGCTTTACTGTGGAATATATATGCTTGAATCTAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7032#0      TATGTGTTTCCTCTATATTTAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAA 60
consensus_7032#1      --------CTGTCTTCCTCAAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAA 52
                                 ***   *  ****************************************

consensus_7032#0      GATACTTCGGAACTGCAAACATCCCGCGCTTTACTGAAAGCCATCCCATCTAGAGAAGCC 120
consensus_7032#1      GATACTTCGGAACTGCAAA------------------AAACCATCCCATCTAGAGAAGCC 94
                      *******************                  ** ********************

consensus_7032#0      GGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCAAAAGCAC 180
consensus_7032#1      GGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCCAAAGCAC 154
                      **************************************************** *******

consensus_7032#0      -AGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGA 239
consensus_7032#1      CAGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGA 214
                       ***********************************************************

consensus_7032#0      TGAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCC 299
consensus_7032#1      TGAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCC 274
                      ************************************************************

consensus_7032#0      AGTCA-TGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCA 358
consensus_7032#1      AGTCACTGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCA 334
                      ***** ******************************************************

consensus_7032#0      ATGAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGGTGTGAAACTAGACA 418
consensus_7032#1      ATGAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGTTGTGAAACTAGACC 394
                      ********************************************* ************* 

consensus_7032#0      AAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCC-AAATAAATAA 477
consensus_7032#1      AAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCCAAATAAATAA 454
                      ************************************************* **********

consensus_7032#0      GTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATNTAAA 537
consensus_7032#1      GTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATATATA 514
                      ******************************************************* ** *

consensus_7032#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 588
consensus_7032#1      TGCTTGAATCTAAAAAAAA-------------------------------- 533
                            **   ********                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)