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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1673 fasta sequence
[ACAGAAATCTCAGGGAGGAGCTACGGCTATGACAATTCCCCAAGAGCCAGTGAGTTCGATGAACATGATCTGACCATCAGGAGGCTCAACGAGTACAGAGCACGCCTGTCGAGTCTTCAGAAAGAGAAGTCTGACCGGCTTCACAGGGTTCTTGAGCACGTCACCGAGGTGCACTCCCTGTGCGACGTGCTCGGCGAGGACTTCATCGCCATCGTCAACGAGGTCCACCCGGGGCTGCACGAGACGGCGGATCCCGGCAAGCCCACCAGCATCAGCGACAGCACGCTGGCCAGCCTCTCCCAGGTCGTCGCGATGCTCACGTCGGAGAAGACCAAGCGAGCAGCCATGCTGCGAGAGGCCGTGGTGCCACTGGTCGAGCTCTGGGACCTGATGGACTTGCCGGAGGAGGAGCGGCGGAGCTTCAGGAAGGCGACGGCCGTTCTGAGGCCGGCGAGGGAGGAGGCTCTGTCCTCCGGCGTGCTGTCCATCGCAACCATCAAGAAGACGGAGGAGGAGGTCGAGAGGTTGACGAGGCTCAAGGCTGGCCGGATGAAGGAGCTCGTGCTCAAGAGGAGGTTGGAGCTGGAGAGCATCTGCAGGAGCATGCACGTCGAGCCTGACACCAGCACTGTGCCGGAGAAGTCCATCGCGTTGATTGATTCTGGCCTTGTGAATCCTTCTGAGCTCATGGCCAGCATCGACGAGCAGATCGCGAAGGCGAAGGAGGAGCAGCAGTCCAGGAAAGAAATCATGGACAAGATCAACAAGTGGCTGCTGGCGTGTGAGGAAGAGAAATGGCTCGAGGAGTACAATTTGGAAGAGAACAGATTCAATACTGGAAGAATAGCGCGTCTGAACCTGAAACGCGCCGAAAAGGCAAGGCTTATCATCAACAAGATTCCAGCAATGATCGACAACCTGATGAGTCGAACACTAGTCTGGGAGACCGAAAGAAACAAGCCTTTTCTGTATGACGGGGCTCGCTTGGTCGCCGTGTTGGAAGAGCACAAGCAAGCCAGGCTGAGGCAGGAAGAAGAGAGGAGGCGCCTCCGGGAGCAGAAGAAGCTGCGCACTCTGTTCAGCGAGAAAGAGGCGATGCCTCACCTGAAAAGGCCCGGCAGCAGCTTCGGCAGGGCGACGGAGCCGTGCAACATGAGCCGGAAGAGGGTCGACGCCGCGCCGCCGTCGGTGCGCAGCAGCAGCGGGTCCAGCGGGAGCAGCGGCGGCGGCGCGGCTGATCCCTTCAGGCCGCGGTCGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTGCGAGGCGGCTGTCGGCGGCGGCGCCGTTCAACTACGTCGCCGTGTCCAAGGGCGGCGGCGGCGGCGGCGGCTTGTCGTCGTCGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTTATCATAAAAAA]
[+] EMBL AK108923 [ACAGAAATCTCAGGGAGGAGCTACGGCTATGACAATTCCCCAAGAGCCAGTGAGTTCGATGAACATGATCTGACCATCAGGAGGCTCAACGAGTACAGAGCACGCCTGTCGAGTCTTCAGAAAGAGAAGTCTGACCGGCTTCACAGGGTTCTTGAGCACGTCACCGAGGTGCACTCCCTGTGCGACGTGCTCGGCGAGGACTTCATCGCCATCGTCAACGAGGTCCACCCGGGGCTGCACGAGACGGCGGATCCCGGCAAGCCCACCAGCATCAGCGACAGCACGCTGGCCAGCCTCTCCCAGGTCGTCGCGATGCTCACGTCGGAGAAGACCAAGCGAGCAGCCATGCTGCGAGAGGCCGTGGTGCCACTGGTCGAGCTCTGGGACCTGATGGACTTGCCGGAGGAGGAGCGGCGGAGCTTCAGGAAGGCGACGGCCGTTCTGAGGCCGGCGAGGGAGGAGGCTCTGTCCTCCGGCGTGCTGTCCATCGCAACCATCAAGAAGACGGAGGAGGAGGTCGAGAGGTTGACGAGGCTCAAGGCTGGCCGGATGAAGGAGCTCGTGCTCAAGAGGAGGTTGGAGCTGGAGAGCATCTGCAGGAGCATGCACGTCGAGCCTGACACCAGCACTGTGCCGGAGAAGTCCATCGCGTTGATTGATTCTGGCCTTGTGAATCCTTCTGAGCTCATGGCCAGCATCGACGAGCAGATCGCGAAGGCGAAGGAGGAGCAGCAGTCCAGGAAAGAAATCATGGACAAGATCAACAAGTGGCTGCTGGCGTGTGAGGAAGAGAAATGGCTCGAGGAGTACAATTTGGAAGAGAACAGATTCAATACTGGAAGAATAGCGCGTCTGAACCTGAAACGCGCCGAAAAGGCAAGGCTTATCATCAACAAGATTCCAGCAATGATCGACAACCTGATGAGTCGAACACTAGTCTGGGAGACCGAAAGAAACAAGCCTTTTCTGTATGACGGGGCTCGCTTGGTCGCCGTGTTGGAAGAGCACAAGCAAGCCAGGCTGAGGCAGGAAGAAGAGAGGAGGCGCCTCCGGGAGCAGAAGAAGCTGCGCACTCTGTTCAGCGAGAAAGAGGCGATGCCTCACCTGAAAAGGCCCGGCAGCAGCTTCGGCAGGGCGACGGAGCCGTGCAACATGAGCCGGAAGAGGGTCGACGCCGCGCCGCCGTCGGTGCGCAGCAGCAGCGGGTCCAGCGGGAGCAGCGGCGGCGGCGCGGCTGATCCCTTCAGGCCGCGGTCGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTGCGAGGCGGCTGTCGGCGGCGGCGCCGTTCAACTACGTCGCCGTGTCCAAGGGCGGCGGCGGCGGCGGCGGCTTGTCGTCGTCGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGG ]
[+] EMBL AU223139 [ CCCTTCAGGCCGCGGTCGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTGCGAGGCGGCTGTCGGCGGCGGCGCCGTTCAACTACGTCGCCGTGTCCAAGGGCGGCGGCGGCGGCGGCGGCTTGTCGTCGTCGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTTATCATAAAAAA]
[-] EMBL CB637134 [ tCCTTCAGGCCGCGGTCGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTGCGAGGCGGCTGTCGGCGGCGGCGCCGTTCAACTACGTCGCCGTGTCCAAGGGCGGCGGCGGCGGCGGCGGCTTGTCGTCGTCGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGATACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGG ]
consensusID : consensus_7033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[CTGAAAGCCCGCACATCTTCNCGTCAGGGCNACAGACCGTGCAACATGACGCCCGGNAGAGGTTCGACTCCTGCGCCGCCGTCAGGTGCCACATCATCCGGGTCCATGCGGGACCATTCGCGCGGCCGCCTGATCCCTTCAGCCCGTCGTCGCGCAGCCGGATCGGGCACGGGCCACTCGGCGAGTTCTTCAGGAGCAGCGGTGCGAGGCAGGCTGTCGGCAGCAGGCNCCGTTCAACTACGTCAGCCGTGTCCAAGGGCGNCGGCAGGCGGCAGGCAGGCTTGTCGTCGTCAGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGCCTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTAAAAAAAAAA]
[+] EMBL BI807024 [CTGAAAGCCCGCACATCTTCNCGTCAGGGCNACAGACCGTGCAACATGACGCCCGGNAGAGGTTCGACTCCTGCGCCGCCGTCAGGTGCCACATCATCCGGGTCCATGCGGGACCATTCGCGCGGCCGCCTGATCCCTTCAGCCCGTCGTCGCGCAGCCGGATCGGGCACGGGCCACTCGGCGAGTTCTTCAGGAGCAGCGGTGCGAGGCAGGCTGTCGGCAGCAGGCNCCGTTCAACTACGTCAGCCGTGTCCAAGGGCGNCGGCAGGCGGCAGGCAGGCTTGTCGTCGTCAGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGCCTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7033#0 ACAGAAATCTCAGGGAGGAGCTACGGCTATGACAATTCCCCAAGAGCCAGTGAGTTCGAT 60
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 GAACATGATCTGACCATCAGGAGGCTCAACGAGTACAGAGCACGCCTGTCGAGTCTTCAG 120
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 AAAGAGAAGTCTGACCGGCTTCACAGGGTTCTTGAGCACGTCACCGAGGTGCACTCCCTG 180
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 TGCGACGTGCTCGGCGAGGACTTCATCGCCATCGTCAACGAGGTCCACCCGGGGCTGCAC 240
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 GAGACGGCGGATCCCGGCAAGCCCACCAGCATCAGCGACAGCACGCTGGCCAGCCTCTCC 300
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 CAGGTCGTCGCGATGCTCACGTCGGAGAAGACCAAGCGAGCAGCCATGCTGCGAGAGGCC 360
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 GTGGTGCCACTGGTCGAGCTCTGGGACCTGATGGACTTGCCGGAGGAGGAGCGGCGGAGC 420
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 TTCAGGAAGGCGACGGCCGTTCTGAGGCCGGCGAGGGAGGAGGCTCTGTCCTCCGGCGTG 480
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 CTGTCCATCGCAACCATCAAGAAGACGGAGGAGGAGGTCGAGAGGTTGACGAGGCTCAAG 540
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 GCTGGCCGGATGAAGGAGCTCGTGCTCAAGAGGAGGTTGGAGCTGGAGAGCATCTGCAGG 600
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 AGCATGCACGTCGAGCCTGACACCAGCACTGTGCCGGAGAAGTCCATCGCGTTGATTGAT 660
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 TCTGGCCTTGTGAATCCTTCTGAGCTCATGGCCAGCATCGACGAGCAGATCGCGAAGGCG 720
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 AAGGAGGAGCAGCAGTCCAGGAAAGAAATCATGGACAAGATCAACAAGTGGCTGCTGGCG 780
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 TGTGAGGAAGAGAAATGGCTCGAGGAGTACAATTTGGAAGAGAACAGATTCAATACTGGA 840
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 AGAATAGCGCGTCTGAACCTGAAACGCGCCGAAAAGGCAAGGCTTATCATCAACAAGATT 900
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 CCAGCAATGATCGACAACCTGATGAGTCGAACACTAGTCTGGGAGACCGAAAGAAACAAG 960
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 CCTTTTCTGTATGACGGGGCTCGCTTGGTCGCCGTGTTGGAAGAGCACAAGCAAGCCAGG 1020
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 CTGAGGCAGGAAGAAGAGAGGAGGCGCCTCCGGGAGCAGAAGAAGCTGCGCACTCTGTTC 1080
consensus_7033#1 ------------------------------------------------------------
consensus_7033#0 AGCGAGAAAGAGGCGATGCCTCACCTGAAAAGGCCCGGCAGCAGCTTCGGCAGGGCGACG 1140
consensus_7033#1 ------------------------CTGAAA--GCCCGCACATCTTCNCGTCAGGGCNACA 34
****** ***** ** ****** **
consensus_7033#0 GAGCCGTGCAACATGAG--CCGGAAGAGGGTCGACGCC-GCGCCGCCGTCGGTGCGCAGC 1197
consensus_7033#1 GA-CCGTGCAACATGACGCCCGGNAGAGGTTCGACTCCTGCGCCGCCGTCAG-GTGCCAC 92
** ************* **** ***** ***** ** *********** * * ** *
consensus_7033#0 AGCAGC-GGGTCCA-GCGGGAGCAGCGGCGGCGGCGCGGCTGATCCCTTCAGGCCGCGGT 1255
consensus_7033#1 ATCATCCGGGTCCATGCGGGACCATTCGCG-CGGC-CGCCTGATCCCTTCAGCCCGTCGT 150
* ** * ******* ****** ** *** **** ** ************* *** **
consensus_7033#0 CGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTG 1315
consensus_7033#1 CGC-----GCAGCCGGATCGGGCACGGGCCACT-CGGCGAGTTCTTCAGGAGCAGCGGTG 204
** ** ************ **** **** ******************* ******
consensus_7033#0 CGAGGC-GGCTGTCGGCGGC-GGCGCCGTTCAACTACGTC-GCCGTGTCCAAGGGCGGCG 1372
consensus_7033#1 CGAGGCAGGCTGTCGGCAGCAGGCNCCGTTCAACTACGTCAGCCGTGTCCAAGGGCGNCG 264
****** ********** ** *** *************** **************** **
consensus_7033#0 GC-GGCGGCGGC--GGCTTGTCGTCGTC-GATGATGTCATGAAGCGCGTAGCTAGGTGGG 1428
consensus_7033#1 GCAGGCGGCAGGCAGGCTTGTCGTCGTCAGATGATGTCATGAAGCGCGTAGCTAGGTGGG 324
** ****** * ************** *******************************
consensus_7033#0 CCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTT 1488
consensus_7033#1 CCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTT 384
************************************************************
consensus_7033#0 TTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTT 1548
consensus_7033#1 TTGTACCGCTCGGAAGCTTCTAGAAGCCTCGTTTGTGACGGCGGATTTGATTATTGGTTT 444
************************** ********************************
consensus_7033#0 ATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTAT 1608
consensus_7033#1 ATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTAT 504
************************************************************
consensus_7033#0 GTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTTATCATA 1668
consensus_7033#1 GTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTAAAAAAA 564
***************************************************** * * *
consensus_7033#0 AAAAA 1673
consensus_7033#1 AAA-- 567
***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||