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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1853 fasta sequence
[CCCACCGAAGGAGAGAGCCGGCTATGGCCATGGCGGCCTCCCCATTCCTCATCTTGCCATCCTTATTCCCCAAGCCCACCATCCTCGCCGCGCGCATCCACCCCAGCATCTTCCGAGGCCGCCATATTCGCTGCTCCCCGAACGGCGCCGCCGTACCGGAATCCCCTGAACCCGCCCCACGCCGCGGGCGCAGGAAGTCCCCATCCCCGTCGCCGCCGAAGGCGAAGACCACGAGGCGCAGGACCAAGAAGAATACGCAGGAGTCTGATTCAGAGGGCGAGGAGGAGCCGCCGAAGCGGCGGGGCCGTCGGACAAGGAAATCCAAGCAAGAGGCCGAGCAGGAGGCGGCGGAGAAGGAGGATGAGGTCCGGGCGGCGAGCCCCGGAACGGAGGATTCGAAGAGAGCGGTCCAAGATGAGGATGGGGAGGCGGAGGCGACGGGGAGCGACTCCGAAGACGGGGAGGATTCGCCGTACGACTGGCCGCCGCTGGTGTGCTGCTTCGGGGCGCCGCGGTGGGAGTTCGTCCCGACGGTGCGGGTGTCGGACCGGCAGATGCACCCGGACATATACTCCACGTGGCTGCATCTGCAGTGGGAGCCTCCGGAGTTCGCGCGCGCGCCGGGGAGCGCGGCGAGCAACGTGGCCATCGCGCTCACCAGGCTCGGCGGCCGCGCCGCGGTGCTCGGCAAGGTCGGTGACGACGACTTCGGCCGCGAGCTTGTGTACCGCATGAACTGCGAGCGAGTGCAGACGCGCGCCATCAGGTTCGACGACGGCGCGGCCACGGCCACTGCGCGCATGAAGGTCGGGTTCCGGGACCGTGAGGACGGCAGCGGCGGAACGAGGCTTGTGGCTGAGACGGTGAAGAGCGCTGCCGAGGACTCCCTCAGCAAGGCTGAGATCAATGTGGATGTTTTGAAAGAGGCTAGAGTGTTCCATTTCAATTCAGAGGTCCTATTGACTCCCTCAATGGAAAGCACACTCTTCAGAGCAATTGAACTGTCCAAGAAATTTGGAAGTAAAATATTCTTTGATCTTAACTTGCCATTGCCTTTGTGGAGGTCAAGGGATGAAACAAAGGAGTTGATAAACAAGGCATGGAATGAGGCTGATATTATAGAGGTGTCAAGGGATGAGTTGGAATTCCTCCTTGATCACGAGTACTATCAATATAAGCGTGCCAATCCACCTCAGTATTATCTGGATGGTTTTCATCTAACAAGGAACTGGCCACAGTACTACCATTACACCCCCGAAGAAATTGCTCCCATTTGGCATGATGGGATAAAACTCTTGCTTGTGACATACGGAACACTTAGGATCCACTACTACACACCCAAGTTTCATGGCTGCGTGATTGGGACGGAGGATGCACTCATAACTCCATACACAACTGACCGGACAGGTTCTGGAGATGCTGTTGTTGCTGCTGCTATTAGAAAATTGACGTCTTGTCCTGAGATGTATGAGGACCAGGATACATTGGAGAGGAATCTGAGATTCGCTGTTGCTGCCGGAATCATTTCGCAATGGACTATTGGTGCTGTGCGAGGATTCCCTACTGAGAGTGCTGCCCAGAACTTGAAGGAGCAAGTATATGTGCCTTCTATGTGGTGACTGGCGGACTGGTAATCATTTGTGATTAAAAGAACAATGCTCATGATATACAAGTGTATTTCATGAGTGCTGCAACAGAGGTGGTCAAGGGAAAAGTTTTACCAAAACAGCTTACAGGCTTTTCAGGTATCATCCTATCGTCCGTTCCATATTGTTTCAGTGTTCAGTTTTAGTTGGAAAAATGTGTCTGCCACTTGGAGGCTTCCATTGCTTTACAGTTTTGAAGAGCTATGT]
[+] EMBL CB640563 [CCCACCGAAGGAGAGAGCCGGCTATGGCCATGGCGGCCTCCCCATTCCTCATCTTGCCATCCTTATTCCCCAAGCCCACCATCCTCGCCGCGCGCATCCACCCCAGCATCTTCCGAGGCCGCCATATTCGCTGCTCCCCGAACGGCGCCGCCGTACCGGAATCCCCTGAACCCGCCCCACGCCGCGGGCGCAGGAAGTCCCCATCCCC ]
[+] EMBL AK065338 [ CCATGGCGGCCTCCCCATTCCTCATCTTGCCATCCTTATTCCCCAAGCCCACCATCCTCGCCGCGCGCATCCACCCCAGCATCTTCCGAGGCCGCCATATTCGCTGCTCCCCGAACGGCGCCGCCGTACCGGAATCCCCTGAACCCGCCCCACGCCGCGGGCGCAGGAAGTCCCCATCCCCGTCGCCGCCGAAGGCGAAGACCACGAGGCGCAGGACCAAGAAGAATACGCAGGAGTCTGATTCAGAGGGCGAGGAGGAGCCGCCGAAGCGGCGGGGCCGTCGGACAAGGAAATCCAAGCAAGAGGCCGAGCAGGAGGCGGCGGAGAAGGAGGATGAGGTCCGGGCGGCGAGCCCCGGAACGGAGGATTCGAAGAGAGCGGTCCAAGATGAGGATGGGGAGGCGGAGGCGACGGGGAGCGACTCCGAAGACGGGGAGGATTCGCCGTACGACTGGCCGCCGCTGGTGTGCTGCTTCGGGGCGCCGCGGTGGGAGTTCGTCCCGACGGTGCGGGTGTCGGACCGGCAGATGCACCCGGACATATACTCCACGTGGCTGCATCTGCAGTGGGAGCCTCCGGAGTTCGCGCGCGCGCCGGGGAGCGCGGCGAGCAACGTGGCCATCGCGCTCACCAGGCTCGGCGGCCGCGCCGCGGTGCTCGGCAAGGTCGGTGACGACGACTTCGGCCGCGAGCTTGTGTACCGCATGAACTGCGAGCGAGTGCAGACGCGCGCCATCAGGTTCGACGACGGCGCGGCCACGGCCACTGCGCGCATGAAGGTCGGGTTCCGGGACCGTGAGGACGGCAGCGGCGGAACGAGGCTTGTGGCTGAGACGGTGAAGAGCGCTGCCGAGGACTCCCTCAGCAAGGCTGAGATCAATGTGGATGTTTTGAAAGAGGCTAGAGTGTTCCATTTCAATTCAGAGGTCCTATTGACTCCCTCAATGGAAAGCACACTCTTCAGAGCAATTGAACTGTCCAAGAAATTTGGAAGTAAAATATTCTTTGATCTTAACTTGCCATTGCCTTTGTGGAGGTCAAGGGATGAAACAAAGGAGTTGATAAACAAGGCATGGAATGAGGCTGATATTATAGAGGTGTCAAGGGATGAGTTGGAATTCCTCCTTGATCACGAGTACTATCAATATAAGCGTGCCAATCCACCTCAGTATTATCTGGATGGTTTTCATCTAACAAGGAACTGGCCACAGTACTACCATTACACCCCCGAAGAAATTGCTCCCATTTGGCATGATGGGATAAAACTCTTGCTTGTGACATACGGAACACTTAGGATCCACTACTACACACCCAAGTTTCATGGCTGCGTGATTGGGACGGAGGATGCACTCATAACTCCATACACAACTGACCGGACAGGTTCTGGAGATGCTGTTGTTGCTGCTGCTATTAGAAAATTGACGTCTTGTCCTGAGATGTATGAGGACCAGGATACATTGGAGAGGAATCTGAGATTCGCTGTTGCTGCCGGAATCATTTCGCAATGGACTATTGGTGCTGTGCGAGGATTCCCTACTGAGAGTGCTGCCCAGAACTTGAAGGAGCAAGTATATGTGCCTTCTATGTGGTGACTGGCGGACTGGTAATCATTTGTGATTAAAAGAACAATGCTCATGATATACAAGTGTATTTCATGAGTGCTGCAACAGAGGTGGTCAAGGGAAAAGTTTTACCAAAACAGCTTACAGGCTTTTCAGGTATCATCCTATCGTCCGTTCCATATTGTTTCAGTGTTCAGTTTTAGTTGGAAAAATGTGTCTGCCACTTGGAGGCTTCCATTGCTTTACAGTTTTGAAGAGCTATGT]
[+] EMBL CB659384 [ GTCGGTGACGACGACTTCGGCCGCGAGCTTGTGTACCGCATGAACTGCGAGCGAGTGCAGACGCGCGCCATCAGGTTCGACGACGGCGCGGCCACGGCCACTGCGCGCATGAAGGTCGGGTTCCGGGACCGTGAGGACGGCAGCGGCGGAACGAGGCTTGTGGCTGAGACGGTGAAGAGCGCTGCCGAGGACTCCCTCAGCAAGGCTGAGATCAATGTGGATGTTTTGAAAGAGGCTAGAGTGTTCCATTTCAATTCAGAGGTCCTATTGACTCCCTCAATGGAAAGCACACTCTTCAGAGCAATTGAACTGTCCAAGAAATTTGGAAGTAAAATATTCTTTGATCTTAACTTGCCATTGCCTTTGTGGAGGTCAAGGGATGAAACAAAGGAGTTGATAAACAAGGCATGGAATGAGGCTGATATTATAGAGGTGTCAAGGGATGAGTTGGAATTCCTCCTTGATCACGAGTACTATCAATATAAGCGTGCCAATCCACCTCAGTATTATCTGGATGGTTTTCATCTAACAAGGAACTGGCCACAGTACTACCATTACACCCCCGAAGAAATTGCTCCCATTTGGCATGATGGGATAAAACTCTTGCTTGTGACATACGGAACACTTAGGATCCACTACTACACACCCAAGTTTCATGGCTGCGTGATTGGGACGGAGGATGCACTCATAACTCCATACACAACTGACCGGACAGGTTCTGGAGATGCTGTTGTTGCTGCTGCTATTAGAAAATTGACGTCTTGTCCTGAGATGTATGAGGACC ]
consensusID : consensus_7038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[ATGGCTGCGTGATTGGGACGGAGGATGCACTCATAACTCCATACACAACTGACCGGACAGGTTCTGGAGATGCTGTTGTTGCTGCTGCTATTAGAAAATTGACGTCTTGTCCTGAGATGTATGAGGACCAGGATACATTGGAGAGGAATCTGAGATTCGCTGTTGCTGCCGGAATCATTTCGCAATGGACTATTGGTGCTGTGCGAGGATTCCCTACTGAGAGTGCTGCCCAGAACTTGAAGGAGCAAGTATATGTGCCTTCTATGTGGTGACTGGCGGACTGGTAATCATTTGTGATTAAAAGAACAATGCTCATGATATACAAGTGTATTTCATGAGTGCTGCAACAGAGGTGGTCAAGGGAAAAGTTTTACCAAAACAGCTTACAGGCTTTTCAGGTCTACAGAAGACGCTTTTAATTAGAGGGAAACAGGTGATAATCATGTTTCATCAAATAAATCTTTTTCCTAGTGTTCTAGTCATAGAAGCACTATTCTAGCACTTAGTGAGGATATAATTGATTGATGTATATTTCCCACTTCATTTTCTCATCTTTCCTTGTCGAGGGCATGGGACTAGAATTGCGACAGTCAGATTTTCATTCCTATAACCTAATGCAGAGGATTTAGATAGCCAGGAAACACTAGGAACCCACTTTTTCTTTTCATTTGCAAGATTTAGTGCATCTGTTGGTTATTTGTGTCTTGAACCTCTGTTTCAACTTGGCGATAGTTTCAGTGCTGAAACTTGAAAAATGTT]
[-] EMBL CB659385 [ATGGCTGCGTGATTGGGACGGAGGATGCACTCATAACTCCATACACAACTGACCGGACAGGTTCTGGAGATGCTGTTGTTGCTGCTGCTATTAGAAAATTGACGTCTTGTCCTGAGATGTATGAGGACCAGGATACATTGGAGAGGAATCTGAGATTCGCTGTTGCTGCCGGAATCATTTCGCAATGGACTATTGGTGCTGTGCGAGGATTCCCTACTGAGAGTGCTGCCCAGAACTTGAAGGAGCAAGTATATGTGCCTTCTATGTGGTGACTGGCGGACTGGTAATCATTTGTGATTAAAAGAACAATGCTCATGATATACAAGTGTATTTCATGAGTGCTGCAACAGAGGTGGTCAAGGGAAAAGTTTTACCAAAACAGCTTACAGGCTTTTCAGGTCTACAGAAGACGCTTTTAATTAGAGGGAAACAGGTGATAATCATGTTTCATCAAATAAATCTTTTTCCTAGTGTTCTAGTCATAGAAGCACTATTCTAGCACTTAGTGAGGATATAATTGATTGATGTATATTTCCCACTTCATTTTCTCATCTTTCCTTGTCGAGGGCATGGGACTAGAATTGCGACAGTCAGATTTTCATTCCTATAACCTAATGCAGAGGATTTAGATAGCCAGGAAACACTAGGAACCCACTTTTTCTTTTCATTTGCAAGATTTAGTGCATCTGTTGGTTATTTGTGTCTTGAACCTCTGTTTCAACTTGGCGATAGTTTCAGTGCTGAAACTTGAAAAATGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7038#0 CCCACCGAAGGAGAGAGCCGGCTATGGCCATGGCGGCCTCCCCATTCCTCATCTTGCCAT 60
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 CCTTATTCCCCAAGCCCACCATCCTCGCCGCGCGCATCCACCCCAGCATCTTCCGAGGCC 120
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GCCATATTCGCTGCTCCCCGAACGGCGCCGCCGTACCGGAATCCCCTGAACCCGCCCCAC 180
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GCCGCGGGCGCAGGAAGTCCCCATCCCCGTCGCCGCCGAAGGCGAAGACCACGAGGCGCA 240
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GGACCAAGAAGAATACGCAGGAGTCTGATTCAGAGGGCGAGGAGGAGCCGCCGAAGCGGC 300
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GGGGCCGTCGGACAAGGAAATCCAAGCAAGAGGCCGAGCAGGAGGCGGCGGAGAAGGAGG 360
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 ATGAGGTCCGGGCGGCGAGCCCCGGAACGGAGGATTCGAAGAGAGCGGTCCAAGATGAGG 420
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 ATGGGGAGGCGGAGGCGACGGGGAGCGACTCCGAAGACGGGGAGGATTCGCCGTACGACT 480
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GGCCGCCGCTGGTGTGCTGCTTCGGGGCGCCGCGGTGGGAGTTCGTCCCGACGGTGCGGG 540
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 TGTCGGACCGGCAGATGCACCCGGACATATACTCCACGTGGCTGCATCTGCAGTGGGAGC 600
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 CTCCGGAGTTCGCGCGCGCGCCGGGGAGCGCGGCGAGCAACGTGGCCATCGCGCTCACCA 660
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GGCTCGGCGGCCGCGCCGCGGTGCTCGGCAAGGTCGGTGACGACGACTTCGGCCGCGAGC 720
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 TTGTGTACCGCATGAACTGCGAGCGAGTGCAGACGCGCGCCATCAGGTTCGACGACGGCG 780
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 CGGCCACGGCCACTGCGCGCATGAAGGTCGGGTTCCGGGACCGTGAGGACGGCAGCGGCG 840
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GAACGAGGCTTGTGGCTGAGACGGTGAAGAGCGCTGCCGAGGACTCCCTCAGCAAGGCTG 900
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 AGATCAATGTGGATGTTTTGAAAGAGGCTAGAGTGTTCCATTTCAATTCAGAGGTCCTAT 960
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 TGACTCCCTCAATGGAAAGCACACTCTTCAGAGCAATTGAACTGTCCAAGAAATTTGGAA 1020
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GTAAAATATTCTTTGATCTTAACTTGCCATTGCCTTTGTGGAGGTCAAGGGATGAAACAA 1080
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 AGGAGTTGATAAACAAGGCATGGAATGAGGCTGATATTATAGAGGTGTCAAGGGATGAGT 1140
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 TGGAATTCCTCCTTGATCACGAGTACTATCAATATAAGCGTGCCAATCCACCTCAGTATT 1200
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 ATCTGGATGGTTTTCATCTAACAAGGAACTGGCCACAGTACTACCATTACACCCCCGAAG 1260
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 AAATTGCTCCCATTTGGCATGATGGGATAAAACTCTTGCTTGTGACATACGGAACACTTA 1320
consensus_7038#1 ------------------------------------------------------------
consensus_7038#0 GGATCCACTACTACACACCCAAGTTTCATGGCTGCGTGATTGGGACGGAGGATGCACTCA 1380
consensus_7038#1 ---------------------------ATGGCTGCGTGATTGGGACGGAGGATGCACTCA 33
*********************************
consensus_7038#0 TAACTCCATACACAACTGACCGGACAGGTTCTGGAGATGCTGTTGTTGCTGCTGCTATTA 1440
consensus_7038#1 TAACTCCATACACAACTGACCGGACAGGTTCTGGAGATGCTGTTGTTGCTGCTGCTATTA 93
************************************************************
consensus_7038#0 GAAAATTGACGTCTTGTCCTGAGATGTATGAGGACCAGGATACATTGGAGAGGAATCTGA 1500
consensus_7038#1 GAAAATTGACGTCTTGTCCTGAGATGTATGAGGACCAGGATACATTGGAGAGGAATCTGA 153
************************************************************
consensus_7038#0 GATTCGCTGTTGCTGCCGGAATCATTTCGCAATGGACTATTGGTGCTGTGCGAGGATTCC 1560
consensus_7038#1 GATTCGCTGTTGCTGCCGGAATCATTTCGCAATGGACTATTGGTGCTGTGCGAGGATTCC 213
************************************************************
consensus_7038#0 CTACTGAGAGTGCTGCCCAGAACTTGAAGGAGCAAGTATATGTGCCTTCTATGTGGTGAC 1620
consensus_7038#1 CTACTGAGAGTGCTGCCCAGAACTTGAAGGAGCAAGTATATGTGCCTTCTATGTGGTGAC 273
************************************************************
consensus_7038#0 TGGCGGACTGGTAATCATTTGTGATTAAAAGAACAATGCTCATGATATACAAGTGTATTT 1680
consensus_7038#1 TGGCGGACTGGTAATCATTTGTGATTAAAAGAACAATGCTCATGATATACAAGTGTATTT 333
************************************************************
consensus_7038#0 CATGAGTGCTGCAACAGAGGTGGTCAAGGGAAAAGTTTTACCAAAACAGCTTACAGGCTT 1740
consensus_7038#1 CATGAGTGCTGCAACAGAGGTGGTCAAGGGAAAAGTTTTACCAAAACAGCTTACAGGCTT 393
************************************************************
consensus_7038#0 TTCAGGTAT-CATCCTATCGTCCGTTCCATATTGTTTCAG----TGTTCAGTTTTAGTTG 1795
consensus_7038#1 TTCAGGTCTACAGAAGACGCTTTTAATTAGAGGGAAACAGGTGATAATCATGTTTCATCA 453
******* * ** * * * * * *** * *** *** *
consensus_7038#0 GAAAAATGTGTCTGCCACT--TGGAGGCTTC----CATTGCTTTACAGTTTTGAAGAGCT 1849
consensus_7038#1 AATAAATCTTTTTCCTAGTGTTCTAGTCATAGAAGCACTATTCTAGCACTTAGTGAGGAT 513
* **** * * * * * * * ** * * ** * * ** ** * * *
consensus_7038#0 ATGT-------------------------------------------------------- 1853
consensus_7038#1 ATAATTGATTGATGTATATTTCCCACTTCATTTTCTCATCTTTCCTTGTCGAGGGCATGG 573
**
consensus_7038#0 ------------------------------------------------------------
consensus_7038#1 GACTAGAATTGCGACAGTCAGATTTTCATTCCTATAACCTAATGCAGAGGATTTAGATAG 633
consensus_7038#0 ------------------------------------------------------------
consensus_7038#1 CCAGGAAACACTAGGAACCCACTTTTTCTTTTCATTTGCAAGATTTAGTGCATCTGTTGG 693
consensus_7038#0 ------------------------------------------------------------
consensus_7038#1 TTATTTGTGTCTTGAACCTCTGTTTCAACTTGGCGATAGTTTCAGTGCTGAAACTTGAAA 753
consensus_7038#0 ------
consensus_7038#1 AATGTT 759
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||