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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1980 fasta sequence
[CCGGCGCGGGGAAAGCAAGAGAAAATCTCCGCACACTACCTCTCTGTCCCGCGCGCCGCTGGTCAGAGCGAATGAGCTCAACCGCCGTCCTCCCGCCGCCTCCATTTCTTTAGCGGTTGCCAAGGGTTCTTGAGCTGTCCTTGGTCAATGAGAGTGCAGGAAGGTGGTGGCGTAAGGATCAAAGCTCACGACCCCGCCTCACTGAAATCCATGCAAGCAACCTGGCCTCCTTTGGTGGCTAGTAGCTCTGGATTTCTTATAGCTCATCTTGTTCAGTAGCAGCAGCAGTGTTGCGTACTTGAGCAAGTGCAAGGCTTCTTGCTTGGCACGCTCAGGTGTCCCGTGGTCCGGCCATTGGAGATTTTGGAGCTCGTAATGGCTCACAAGGCCGCGGCTCTGGTGCTGCTGCTAGTGTCAGTGTCAGTGGCGGCCGCGGCGTCGGGCGACCAGGAGAGCGACCGGATCCGGGAGCTCCCCGGGCAGCCGGCGAAGGTGAGGTTCTCGCAGTACTCCGGCTACGTGACGGTCAACCAGGCGCACGGCCGCGCGCTCTTCTACTGGCTGGTGGAGGCGGTGCCGGCGGCCGGGCCCATCGCGCCGCTCGTCCTGTGGCTCAACGGCGGGCCGGGGTGCTCGTCGGTCGGGTACGGCGCGTCGGAGGAGGTCGGCCCGTTCCGGATCAGGCCCGACGGGAAGACGCTGTACCTGAACCCCAATTCTTGGAACAAGGCGGCGAATTTGCTGTTCTTGGAGTCGCCGGCCGGCGTGGGGTTCTCGTACTCGAACAAGACGTTGGATCTGTACGTCGCAGGAGATGCTAAGACAGCATCGGATGCTTATGCATTTCTGGTGAACTGGTTGGAGAGATTCCCACAATACAAGTACAGGGAGTTCTACATTGCTGGGGAGAGCTATGCAGGGCATTACGTTCCCCAGTTAGCCCAGCTCATCTATGAACAGAACAAGGGCATTCAGAATCCAATAATTAATCTCAAAGGATTCATGGTGGGTAATGCGGTTACTGATGACTACCACGACTATCTTGGTACCTTTGAGTATTGGTGGACTCATGGCCTCATCTCTGACAACACTTATCACAACCTGAAGAAGACATGCTTGCTTGAGTCCTCTGAGCACCCTTCTCCTGAATGTCTAAAGAACCTGAACCTAGCCAGTTCAGAAGAAGGCAATATCGATCCTTACAGCCTGTATACAAAGCCCTGCAATAATACAGCCTCTCTCAAACTTGGCTTGGGAGGACGCTACCCTTGGTTATCCAGAGCATATGATCCCTGCACAGAAAGATACTCAAGTATTTACTACAACCGGCCAGAAGTGCAGATAGCGATGCATGCTAACACCACTGGGATTCAATATTCATGGAAAACTTGCAGCGATATTGTCGGATCATACTGGGCAGATTCCCCGAAATCTATGCTTCCTATCTACCAAGAATTGATTGCAGCTGGTATCAGGATATGGGTTTTCAGTGGGGATACAGATGCTGTAGTTCCTGTTACTGC-AACAAGGTACTCAATAGATGCTCTTAAGCTTCCAACTATGGT-CAATTGGTA-CCCTTGGTATGA-CCACGGAAAGGTTGGAGGTTGGAGT-CAAGTGTAT-AAAGGATTAACTCTCGTCACTATAGCAGGCGCAGGCCATGAGGTACCACTACACCGGCCTCGAGAAGCACTTATATTATTCAGACACTTCTTGCAGAATACACCCATGCCAACTCAATAGCCACTTGAAGCAGAATGATAGAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTTTACATTATTTTTTAATTTGATTTGATTATTACAACATGATATCAACTATCTCTACTAAATGTATGTATGTTTCTTACTAGCTAGTAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAGAGCTCCTTTGTATATGATACTGATAGTGATTCTTTGAGCAGTAAAATTTACAATTTTACA]
[+] EMBL AK073320 [CCGGCGCGGGGAAAGCAAGAGAAAATCTCCGCACACTACCTCTCTGTCCCGCGCGCCGCTGGTCAGAGCGAATGAGCTCAACCGCCGTCCTCCCGCCGCCTCCATTTCTTTAGCGGTTGCCAAGGGTTCTTGAGCTGTCCTTGGTCAATGAGAGTGCAGGAAGGTGGTGGCGTAAGGATCAAAGCTCACGACCCCGCCTCACTGAAATCCATGCAAGCAACCTGGCCTCCTTTGGTGGCTAGTAGCTCTGGATTTCTTATAGCTCATCTTGTTCAGTAGCAGCAGCAGTGTTGCGTACTTGAGCAAGTGCAAGGCTTCTTGCTTGGCACGCTCAGGTGTCCCGTGGTCCGGCCATTGGAGATTTTGGAGCTCGTAATGGCTCACAAGGCCGCGGCTCTGGTGCTGCTGCTAGTGTCAGTGTCAGTGGCGGCCGCGGCGTCGGGCGACCAGGAGAGCGACCGGATCCGGGAGCTCCCCGGGCAGCCGGCGAAGGTGAGGTTCTCGCAGTACTCCGGCTACGTGACGGTCAACCAGGCGCACGGCCGCGCGCTCTTCTACTGGCTGGTGGAGGCGGTGCCGGCGGCCGGGCCCATCGCGCCGCTCGTCCTGTGGCTCAACGGCGGGCCGGGGTGCTCGTCGGTCGGGTACGGCGCGTCGGAGGAGGTCGGCCCGTTCCGGATCAGGCCCGACGGGAAGACGCTGTACCTGAACCCCAATTCTTGGAACAAGGCGGCGAATTTGCTGTTCTTGGAGTCGCCGGCCGGCGTGGGGTTCTCGTACTCGAACAAGACGTTGGATCTGTACGTCGCAGGAGATGCTAAGACAGCATCGGATGCTTATGCATTTCTGGTGAACTGGTTGGAGAGATTCCCACAATACAAGTACAGGGAGTTCTACATTGCTGGGGAGAGCTATGCAGGGCATTACGTTCCCCAGTTAGCCCAGCTCATCTATGAACAGAACAAGGGCATTCAGAATCCAATAATTAATCTCAAAGGATTCATGGTGGGTAATGCGGTTACTGATGACTACCACGACTATCTTGGTACCTTTGAGTATTGGTGGACTCATGGCCTCATCTCTGACAACACTTATCACAACCTGAAGAAGACATGCTTGCTTGAGTCCTCTGAGCACCCTTCTCCTGAATGTCTAAAGAACCTGAACCTAGCCAGTTCAGAAGAAGGCAATATCGATCCTTACAGCCTGTATACAAAGCCCTGCAATAATACAGCCTCTCTCAAACTTGGCTTGGGAGGACGCTACCCTTGGTTATCCAGAGCATATGATCCCTGCACAGAAAGATACTCAAGTATTTACTACAACCGGCCAGAAGTGCAGATAGCGATGCATGCTAACACCACTGGGATTCAATATTCATGGAAAACTTGCAGCGATATTGTCGGATCATACTGGGCAGATTCCCCGAAATCTATGCTTCCTATCTACCAAGAATTGATTGCAGCTGGTATCAGGATATGGGTTTTCAGTGGGGATACAGATGCTGTAGTTCCTGTTACTGC AACAAGGTACTCAATAGATGCTCTTAAGCTTCCAACTATGGT CAATTGGTA CCCTTGGTATGA CCACGGAAAGGTTGGAGGTTGGAGT CAAGTGTAT AAAGGATTAACTCTCGTCACTATAGCAGGCGCAGGCCATGAGGTACCACTACACCGGCCTCGAGAAGCACTTATATTATTCAGACACTTCTTGCAGAATACACCCATGCCAACTCAATAGCCACTTGAAGCAGAATGATAGAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTTTACATTATTTTTTAATTTGATTTGATTATTACAACATGATATCAACTATCTCTACTAAATGTATGTATGTTTCTTACTAGCTAGTAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAGAGCTCCTTTGTATATGATACTGATAGTGATTCTTTGAGCAGTAAAATTTACAATTTTA ]
[+] EMBL AU095459 [ TGCNAACAGGGTACTCAATAGATGCTCTTAAGCNTCCAACTATGGTNCAATTGGTACCCCTTGGTATGACCCACGGAAAGGTTGGAGGTTGGAGTCCAAGTGTATAAAAGGTTTAACTCTCGTCACTATAGCAGGCGCAGGCCATGAGGTACCACTACACCGGCCTCGAGAAGCACTTATATTATTCAGACACTTCTTGCAGAATACACCCATGCCAACTCAATAGCCACTTGAAGCAGAATGATAGAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTTTACATTATTTTTTAATTTGATTTGATTATTACAACATGATATCAACTATCTCTACTAAATGTATGTATGTTTCTTACTAGCTAGTAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAGAGCTCCTTTGTATATGATACTGATAGTGATTCTTTGAGCAGTAAAATTTACAATTTTAC ]
[-] EMBL OSR21251A [ GAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTTTACATTATTTTTTAATTTGATTTGATTATTACAACATGATATCAACTATCTCTACTAAATGTATGTATGTTTCTTACTAGCTAGTAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAGAGCTCCTTTGTATATGATACTGATAGTGATTCTTTGAGCAGTAAAATTTACAATTTTACA]
consensusID : consensus_7043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[CGGATCTACTGGGCAGATTCCCCGAAATCTATGCTTCCTATCTACCAAGAATTGATTGCAGCTGGTATCAGGATATGGGTTTTCAGTGGGGATACAGATGCTGTAGTTCCTGTTACTGCAACAAGGTACTCAATAGATGCTCTTAAGCTTCCAACTCTGGTCAATTGGTACCCTTGGTATGACCACGGAAAGGTTGGAGGTTGGAGTCAAGTGTATAAAGGATTAACTCTCGTCACTATAGCAGGCGCAGGCCATGAGGTACCACTACACCGGCCTCGAGAAGCACTTATATTATTCAGACACTTCTTGCAGAATACACCCATGCCAACTCAATAGCCACTTGAAGCAGTATGATAGAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTTTACATTATTTTTTAATTTGATTTGATTATTACAACATGATATGTATGTATGTTTCTTACTAGCTAGTAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAGAGCTCCTTTGTATATGATACTGATAGTGATTCTTTGAGCAGTAAAATTTACAATTTTACATCTT]
[+] EMBL CA765786 [CGGATCTACTGGGCAGATTCCCCGAAATCTATGCTTCCTATCTACCAAGAATTGATTGCAGCTGGTATCAGGATATGGGTTTTCAGTGGGGATACAGATGCTGTAGTTCCTGTTACTGCAACAAGGTACTCAATAGATGCTCTTAAGCTTCCAACTCTGGTCAATTGGTACCCTTGGTATGACCACGGAAAGGTTGGAGGTTGGAGTCAAGTGTATAAAGGATTAACTCTCGTCACTATAGCAGGCGCAGGCCATGAGGTACCACTACACCGGCCTCGAGAAGCACTTATATTATTCAGACACTTCTTGCAGAATACACCCATGCCAACTCAATAGCCACTTGAAGCAGTATGATAGAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTTTACATTATTTTTTAATTTGATTTGATTATTACAACATGATATGTATGTATGTTTCTTACTAGCTAGTAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAGAGCTCCTTTGTATATGATACTGATAGTGATTCTTTGAGCAGTAAAATTTACAATTTTACATCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7043#0 CCGGCGCGGGGAAAGCAAGAGAAAATCTCCGCACACTACCTCTCTGTCCCGCGCGCCGCT 60
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 GGTCAGAGCGAATGAGCTCAACCGCCGTCCTCCCGCCGCCTCCATTTCTTTAGCGGTTGC 120
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 CAAGGGTTCTTGAGCTGTCCTTGGTCAATGAGAGTGCAGGAAGGTGGTGGCGTAAGGATC 180
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 AAAGCTCACGACCCCGCCTCACTGAAATCCATGCAAGCAACCTGGCCTCCTTTGGTGGCT 240
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 AGTAGCTCTGGATTTCTTATAGCTCATCTTGTTCAGTAGCAGCAGCAGTGTTGCGTACTT 300
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 GAGCAAGTGCAAGGCTTCTTGCTTGGCACGCTCAGGTGTCCCGTGGTCCGGCCATTGGAG 360
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 ATTTTGGAGCTCGTAATGGCTCACAAGGCCGCGGCTCTGGTGCTGCTGCTAGTGTCAGTG 420
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TCAGTGGCGGCCGCGGCGTCGGGCGACCAGGAGAGCGACCGGATCCGGGAGCTCCCCGGG 480
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 CAGCCGGCGAAGGTGAGGTTCTCGCAGTACTCCGGCTACGTGACGGTCAACCAGGCGCAC 540
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 GGCCGCGCGCTCTTCTACTGGCTGGTGGAGGCGGTGCCGGCGGCCGGGCCCATCGCGCCG 600
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 CTCGTCCTGTGGCTCAACGGCGGGCCGGGGTGCTCGTCGGTCGGGTACGGCGCGTCGGAG 660
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 GAGGTCGGCCCGTTCCGGATCAGGCCCGACGGGAAGACGCTGTACCTGAACCCCAATTCT 720
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TGGAACAAGGCGGCGAATTTGCTGTTCTTGGAGTCGCCGGCCGGCGTGGGGTTCTCGTAC 780
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TCGAACAAGACGTTGGATCTGTACGTCGCAGGAGATGCTAAGACAGCATCGGATGCTTAT 840
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 GCATTTCTGGTGAACTGGTTGGAGAGATTCCCACAATACAAGTACAGGGAGTTCTACATT 900
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 GCTGGGGAGAGCTATGCAGGGCATTACGTTCCCCAGTTAGCCCAGCTCATCTATGAACAG 960
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 AACAAGGGCATTCAGAATCCAATAATTAATCTCAAAGGATTCATGGTGGGTAATGCGGTT 1020
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 ACTGATGACTACCACGACTATCTTGGTACCTTTGAGTATTGGTGGACTCATGGCCTCATC 1080
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TCTGACAACACTTATCACAACCTGAAGAAGACATGCTTGCTTGAGTCCTCTGAGCACCCT 1140
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TCTCCTGAATGTCTAAAGAACCTGAACCTAGCCAGTTCAGAAGAAGGCAATATCGATCCT 1200
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TACAGCCTGTATACAAAGCCCTGCAATAATACAGCCTCTCTCAAACTTGGCTTGGGAGGA 1260
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 CGCTACCCTTGGTTATCCAGAGCATATGATCCCTGCACAGAAAGATACTCAAGTATTTAC 1320
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TACAACCGGCCAGAAGTGCAGATAGCGATGCATGCTAACACCACTGGGATTCAATATTCA 1380
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TGGAAAACTTGCAGCGATATTGTCGGATCATACTGGGCAGATTCCCCGAAATCTATGCTT 1440
consensus_7043#1 -----------------------CGGATC-TACTGGGCAGATTCCCCGAAATCTATGCTT 36
****** ******************************
consensus_7043#0 CCTATCTACCAAGAATTGATTGCAGCTGGTATCAGGATATGGGTTTTCAGTGGGGATACA 1500
consensus_7043#1 CCTATCTACCAAGAATTGATTGCAGCTGGTATCAGGATATGGGTTTTCAGTGGGGATACA 96
************************************************************
consensus_7043#0 GATGCTGTAGTTCCTGTTACTGCAACAAGGTACTCAATAGATGCTCTTAAGCTTCCAACT 1560
consensus_7043#1 GATGCTGTAGTTCCTGTTACTGCAACAAGGTACTCAATAGATGCTCTTAAGCTTCCAACT 156
************************************************************
consensus_7043#0 ATGGTCAATTGGTACCCTTGGTATGACCACGGAAAGGTTGGAGGTTGGAGTCAAGTGTAT 1620
consensus_7043#1 CTGGTCAATTGGTACCCTTGGTATGACCACGGAAAGGTTGGAGGTTGGAGTCAAGTGTAT 216
***********************************************************
consensus_7043#0 AAAGGATTAACTCTCGTCACTATAGCAGGCGCAGGCCATGAGGTACCACTACACCGGCCT 1680
consensus_7043#1 AAAGGATTAACTCTCGTCACTATAGCAGGCGCAGGCCATGAGGTACCACTACACCGGCCT 276
************************************************************
consensus_7043#0 CGAGAAGCACTTATATTATTCAGACACTTCTTGCAGAATACACCCATGCCAACTCAATAG 1740
consensus_7043#1 CGAGAAGCACTTATATTATTCAGACACTTCTTGCAGAATACACCCATGCCAACTCAATAG 336
************************************************************
consensus_7043#0 CCACTTGAAGCAGAATGATAGAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTT 1800
consensus_7043#1 CCACTTGAAGCAGTATGATAGAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTT 396
************* **********************************************
consensus_7043#0 TACATTATTTTTTAATTTGATTTGATTATTACAACATGATATCAACTATCTCTACTAAAT 1860
consensus_7043#1 TACATTATTTTTTAATTTGATTTGATTATTACAACATGATAT------------------ 438
******************************************
consensus_7043#0 GTATGTATGTTTCTTACTAGCTAGTAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAG 1920
consensus_7043#1 GTATGTATGTTTCTTACTAGCTAGTAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAG 498
************************************************************
consensus_7043#0 AGCTCCTTTGTATATGATACTGATAGTGATTCTTTGAGCAGTAAAATTTACAATTTTACA 1980
consensus_7043#1 AGCTCCTTTGTATATGATACTGATAGTGATTCTTTGAGCAGTAAAATTTACAATTTTACA 558
************************************************************
consensus_7043#0 ----
consensus_7043#1 TCTT 562
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||