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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1575 fasta sequence
[GGCTTCTTCTCGGTTTGTTCGTTCCTTGTGGTCGAGAGTGAGTGAGGTGGAGGAGAGAGAGGAGGAGGAGGAGGAGGGGATTCATTCACGTGGCTTCCGGAGAGAGCAGGAGTCAACGTGCGGCTTGACTCTGGAGATCTCTCTCTGTCGTCTCGCCTCGCCCAAATCAGAAGCGAATGATGGAGGCGTCGAGGTCGTGAGAGGGAGAGGAATCGACGGAGAGAGGGAGGCGGCGGCGGCGGCAGGAAGGTTGGAGAAGGAGAGGCAGTGGAGAAGTCAAGAACAAGAACCCAATCACCGAAACGCCTCATCACTGCAGCAATGCCATCATCAACCATGGCCGTCGACACCACTGCTTCGGAGTACTGGCTCAATTGGAGGTTCATGCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGAGGACAGTGAGGATGCGCGGCCGCCCCGGGCCGCATCCGGGGTTGTGTACCTTGAAGATTGCTGGAAACCATGCCTTGAGCAGATCCACCCTGGCTGGCTGCTGGCGTTCCGCGTCGTGTCTTTCTTCATTTTAGCCTCCCTGCTTGCGGTTGATGTCGTCGTCGATGGATGGAGTGTCTTCCTATACTACACTCAGTGGACCTTCTTGCTAGTCACCTTATATTTTGGGCTTGGTTCGGTGCTTTCAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGACAATAGATCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAGTCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGGGGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTGGTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTGCTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGCCTGCGTTTCCCGTGGTTTAGAATCGCA-TA-TTTCTTG-CTG-TGGACTGGCGCTTTTGTTAATGTTCAGTGGCTCATCCATGCTAGCATATCGATTTGGTGGCCTTACCCATTTCTGGACTTAGCATTTCCTA-AAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTATGCT-TTATTCGCCCTGGTTATGAGGCTAAAACAATCTCTGCTGGAAAGATGGTTTCCTCAGAGTTACACCTGCGTGTAGCAAACAAGAACATATATAGTGTTACAATTTCCCTCCTGCTGCATCCTGCAAATGCAAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAACCATATTGTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGAGTCAGCTGTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAATATAATAATATATGGCATTCTCAAAAAAAAAA]
[+] EMBL AK067987 [GGCTTCTTCTCGGTTTGTTCGTTCCTTGTGGTCGAGAGTGAGTGAGGTGGAGGAGAGAGAGGAGGAGGAGGAGGAGGGGATTCATTCACGTGGCTTCCGGAGAGAGCAGGAGTCAACGTGCGGCTTGACTCTGGAGATCTCTCTCTGTCGTCTCGCCTCGCCCAAATCAGAAGCGAATGATGGAGGCGTCGAGGTCGTGAGAGGGAGAGGAATCGACGGAGAGAGGGAGGCGGCGGCGGCGGCAGGAAGGTTGGAGAAGGAGAGGCAGTGGAGAAGTCAAGAACAAGAACCCAATCACCGAAACGCCTCATCACTGCAGCAATGCCATCATCAACCATGGCCGTCGACACCACTGCTTCGGAGTACTGGCTCAATTGGAGGTTCATGCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGAGGACAGTGAGGATGCGCGGCCGCCCCGGGCCGCATCCGGGGTTGTGTACCTTGAAGATTGCTGGAAACCATGCCTTGAGCAGATCCACCCTGGCTGGCTGCTGGCGTTCCGCGTCGTGTCTTTCTTCATTTTAGCCTCCCTGCTTGCGGTTGATGTCGTCGTCGATGGATGGAGTGTCTTCCTATACTACACTCAGTGGACCTTCTTGCTAGTCACCTTATATTTTGGGCTTGGTTCGGTGCTTTCAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGACAATAGATCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAGTCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGGGGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTGGTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTGCTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGCCTGCGTTTCCCGTGGTTTAGAATCGCA TA TTTCTTG CTG TGGACTGGCGCTTTTGTTAATGTTCAGTGGCTCATCCATGCTAGCATATCGATTTGGTGGCCTTACCCATTTCTGGACTTAGCATTTCCTA AAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTATGCT TTATTCGCCCTGGTTATGAGGCTAAAACAATCTCTGCTGGAAAGATGGTTTCCTCAGAGTTACACCTGCGTGTAGCAAACAAGAACATATATAGTGTTACAATTTCCCTCCTGCTGCATCCTGCAAATGCAAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAACCATATTGTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGAGTCAGCTGTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAATATAATAATATATGGC ]
[+] EMBL CA753231 [ CAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGACAATAGATCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAGTCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGGGGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTGGTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTGCTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGCCTGCGTTTCCCGTGGTTTAGAATCGCA TA TTTCTTG CTG TGGACTGGCGCTTTTGTTAATGTTCAGTGGCTCATCCATGCTAGCATATCGATNTGGTGGCCTTACCCATTTCTGGACTTAGCATTTCCTA AAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTATGCT TTATTCGCCCTGGTTATGAGGC ]
[+] EMBL BI805987 [ ttgTAGAATCGCACTAGTTTCNTGTCGGTTGGACTGGCGCTTTTGTTAATGTGCAGTGGCTCATCCATGCTAGCATATCGATTT GTGGCCTTACCCCTTTCTGGACGTAGCCTTTCCTATAAGCTCCTGTATGGTATTTGGTGGTAGCCGTGATGCATTTCCCTTGCTATGCTGTTATTCGCCCTGGTTATGAGGCT AAACCATCTCTGCTGGAAAGATGGTTTCCTCACAGTTACACCTGCGTGTAGCNAAC AGAACATATATAGTGTTACNATTTCCCTCCTGCTGCATCCTGCAAATGCNAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAACCATATTGTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGAGTCAGCTGTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAGTATAATAATATATGGCATTCTCAAAAAAAAAA]
consensusID : consensus_7045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[TTTTTTTTTTTTTTGAGTAGTAATATCCTGTATTATGAATCTGGCTGCAAACGCCTTATCTCTGCAGCAATGCCATCATCAGCCATGGCCGTCGACACCACTGTTCCTGAGTATTGGCTCAACTGAAAGTTCATTCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGGAAACAGTGAGGATGCGCGGCTGCCCCGGGCCGCATTCGGGGTCGTGTACCTTGAAAATTGCTGGAAGCCATGCCTTGAGCAGATCCACCCCTTGTCTCGTCCTCT]
[+] EMBL CA760291 [TTTTTTTTTTTTTTGAGTAGTAATATCCTGTATTATGAATCTGGCTGCAAACGCCTTATCTCTGCAGCAATGCCATCATCAGCCATGGCCGTCGACACCACTGTTCCTGAGTATTGGCTCAACTGAAAGTTCATTCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGGAAACAGTGAGGATGCGCGGCTGCCCCGGGCCGCATTCGGGGTCGTGTACCTTGAAAATTGCTGGAAGCCATGCCTTGAGCAGATCCACCCCTTGTCTCGTCCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7045#0 GGCTTCTTCTCGGTTTGTTCGTTCCTTGTGGTCGAGAGTGAGTGAGGTGGAGGAGAGAGA 60
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GGAGGAGGAGGAGGAGGGGATTCATTCACGTGGCTTCCGGAGAGAGCAGGAGTCAACGTG 120
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 CGGCTTGACTCTGGAGATCTCTCTCTGTCGTCTCGCCTCGCCCAAATCAGAAGCGAATGA 180
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 TGGAGGCGTCGAGGTCGTGAGAGGGAGAGGAATCGACGGAGAGAGGGAGGCGGCGGCGGC 240
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GGCAGGAAGGTTGGAGAAGGAGAGGCAGTGGAGAAGTCAAGAACAAGAACCCAATCACCG 300
consensus_7045#1 --------TTTTTTTTTTTTTTGAGTAGT--AATATCCTGTATTATGAATCTGGCTGC-- 48
** * *** * * * * * *** * *
consensus_7045#0 AAACGCCTCATCACTGCAGCAATGCCATCATCAACCATGGCCGTCGACACCACTGCTTCG 360
consensus_7045#1 AAACGCCTTATCTCTGCAGCAATGCCATCATCAGCCATGGCCGTCGACACCACTGTTCCT 108
******** *** ******************** ********************* * *
consensus_7045#0 GAGTACTGGCTCAATTGGAGGTTCATGCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTC 420
consensus_7045#1 GAGTATTGGCTCAACTGAAAGTTCATTCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTC 168
***** ******** ** * ****** *********************************
consensus_7045#0 CTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGAT 480
consensus_7045#1 CTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGAT 228
************************************************************
consensus_7045#0 GGCGGCGAGGACAGTGAGGATGCGCGGCCGCCCCGGGCCGCATCCGGGGTTGTGTACCTT 540
consensus_7045#1 GGCGGCGGAAACAGTGAGGATGCGCGGCTGCCCCGGGCCGCATTCGGGGTCGTGTACCTT 288
******* ****************** ************** ****** *********
consensus_7045#0 GAAGATTGCTGGAAACCATGCCTTGAGCAGATCCACCCTGGCTGGCTGCTGGCGTTCCGC 600
consensus_7045#1 GAAAATTGCTGGAAGCCATGCCTTGAGCAGATCCACCCC--TTGTCTCGTCCTCT----- 341
*** ********** *********************** ** ** * *
consensus_7045#0 GTCGTGTCTTTCTTCATTTTAGCCTCCCTGCTTGCGGTTGATGTCGTCGTCGATGGATGG 660
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 AGTGTCTTCCTATACTACACTCAGTGGACCTTCTTGCTAGTCACCTTATATTTTGGGCTT 720
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GGTTCGGTGCTTTCAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGACAATAGA 780
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 TCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAG 840
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 TCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGG 900
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTG 960
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTG 1020
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 CTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGC 1080
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 CTGCGTTTCCCGTGGTTTAGAATCGCATATTTCTTGCTGTGGACTGGCGCTTTTGTTAAT 1140
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GTTCAGTGGCTCATCCATGCTAGCATATCGATTTGGTGGCCTTACCCATTTCTGGACTTA 1200
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GCATTTCCTAAAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTAT 1260
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GCTTTATTCGCCCTGGTTATGAGGCTAAAACAATCTCTGCTGGAAAGATGGTTTCCTCAG 1320
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 AGTTACACCTGCGTGTAGCAAACAAGAACATATATAGTGTTACAATTTCCCTCCTGCTGC 1380
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 ATCCTGCAAATGCAAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAACCATATT 1440
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGAGTCAGCT 1500
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 GTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAATATAATAATATATGGCA 1560
consensus_7045#1 ------------------------------------------------------------
consensus_7045#0 TTCTCAAAAAAAAAA 1575
consensus_7045#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||