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Oryza sativa
cluster # 7051 cluster # 7051       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7051#0 length = 1585 sequences # 3  
consensus_7051#1 length = 509 sequences # 1  

consensusID : consensus_7051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1585
fasta sequence
                              [GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATA-GGGGAGAGGGCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCGGATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACCCAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTGGACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAAGATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGATATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGTCATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAACTGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAGTGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTATCGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCAATGTTGATTGAAATTTGCAGCATGCCATACATTCCACATATAATATATAATGCTCTAATTACATGCAGTTCTGCATTCCATGTATACACCATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGGCTGTGCCTAAATGTTATCTTTTCGCATGAGCATAGACCATGTGGTTGTGCCTAAATTATCTTTTCACGTGAGCAATATATATGGACTACGCAATTGC]

[+] EMBL AK058435             [GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAGAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATA GGGGAGAGGGCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCGGATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACCCAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTGGACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAAGATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGATATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGTCATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAACTGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAGTGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTATCGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCAATGTTGATTGAAATTTGCAGCATGCCATACATTCCACATATAATATATAATGCTCTAATTACATGCAGTTCTGCATTCCATGTATACACCATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGGCTGTGCCTAAATGTTATCTTTTCGCATGAGCATAGACCATGTGGTTGTGCCTAAATTATCTTTTCACGTGAGCAATATATATGGACTACGCAATTGC]
[+] EMBL CB641200             [                                               CAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATAGGGGGAGAAGGCGTATGCGTACGACGCGGGCTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB641176             [                                               CAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_7051#0 GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGC GCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCG AATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGC TGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGAC CCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCG GAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCA AGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATG CAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCA AGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCC GTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGC AGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATAGGGGAGAGG GCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCG GATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACC CAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTG GACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAA GATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGAT ATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGT CATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAAC TGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAG TGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTAT CGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGT GAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCA ATGTTGATTGAAATTTGCAGCATGCCATACATTCCACATATAATATATAATGCTCTAATT ACATGCAGTTCTGCATTCCATGTATACACCATATTTGCATTGCACTACATTCAACTTGAA GCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGGCTGTGCCTAAAT GTTATCTTTTCGCATGAGCATAGACCATGTGGTTGTGCCTAAATTATCTTTTCACGTGAG CAATATATATGGACTACGCAATTGC



consensusID : consensus_7051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence
                              [TAATGAGTGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTATCATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTATGCAACATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGCATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTTCCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCATTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAATTGCTGANNNNNNTCNNNATAGAT]

[+] EMBL CF196701             [TAATGAGTGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTATCATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTATGCAACATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGCATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTTCCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCATTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAATTGCTGANNNNNNTCNNNATAGAT]


>consensus_7051#1 TAATGAGTGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGG TAGCTATCATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGG TAATTGTGAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTATGCAACATATT TGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCC AGATAGACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACAC AATTGCATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATT TTGTTTCCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAA TGTTCATTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTG NACAATTGCTGANNNNNNTCNNNATAGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7051#0      GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGC 60
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      GCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCG 120
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      AATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGC 180
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      TGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGAC 240
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      CCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCG 300
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      GAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCA 360
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      AGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATG 420
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      CAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCA 480
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      AGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCC 540
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      GTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGC 600
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      AGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATAGGGGAGAGG 660
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      GCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCG 720
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      GATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACC 780
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      CAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTG 840
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      GACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAA 900
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      GATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGAT 960
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      ATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGT 1020
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      CATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAAC 1080
consensus_7051#1      ------------------------------------------------------------
                                                                                  

consensus_7051#0      TGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAG 1140
consensus_7051#1      -----------------------------------------------------TAATGAG 7
                                                                           *******

consensus_7051#0      TGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTAT 1200
consensus_7051#1      TGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTAT 67
                      *********** ** ******************* ************ ************

consensus_7051#0      CGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGT 1260
consensus_7051#1      CATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGT 127
                      * *************** ******************************************

consensus_7051#0      GAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCA 1320
consensus_7051#1      GAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTA-TGCAACATATTTGCATT 186
                      ***** ******************************* **   * *** * **       

consensus_7051#0      ATGTTGATTGAAATTTGCAGCATGCCAT------------ACAT-----TCCACATATAA 1363
consensus_7051#1      GCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAG 246
                          *   *  ** *** ***    ***            ****     *   ** *** 

consensus_7051#0      TATATAATGCTCTAATTACATGCAGTTCT---GCATTCCATGTATACACCATAT--TTGC 1418
consensus_7051#1      ACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGC 306
                         **   *** * * ** **    ** *   **   * ** ***  ** * *   ****

consensus_7051#0      ATTGCACTACAT---TCAACTT-GAAGCTCAACATTGAA-GTGTGAAAACATAATTATTT 1473
consensus_7051#1      ATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTT 366
                      **     *  **   * * *** * **    **** *    * *   ***    ** ***

consensus_7051#0      CCAGATAGACCATGGCTGTG--CCTAAATGTTATCTTT----TCGCATGAGCATAGACCA 1527
consensus_7051#1      CCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCA 426
                      **   * * ***  **        * *   *     **    ***    *  *  *  **

consensus_7051#0      TGTGGTTG---TGCCTAAA------------TTATCTTTTCACGTGAGC-AATATATATG 1571
consensus_7051#1      TTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAAT 486
                      *    ***    *    **               *  *****   **     *  * *  

consensus_7051#0      GACTACGCAATTGC--------- 1585
consensus_7051#1      TGCTGANNNNNNTCNNNATAGAT 509
                        **         *         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)