These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1585 fasta sequence [GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATA-GGGGAGAGGGCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCGGATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACCCAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTGGACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAAGATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGATATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGTCATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAACTGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAGTGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTATCGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCAATGTTGATTGAAATTTGCAGCATGCCATACATTCCACATATAATATATAATGCTCTAATTACATGCAGTTCTGCATTCCATGTATACACCATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGGCTGTGCCTAAATGTTATCTTTTCGCATGAGCATAGACCATGTGGTTGTGCCTAAATTATCTTTTCACGTGAGCAATATATATGGACTACGCAATTGC] [+] EMBL AK058435 [GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAGAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATA GGGGAGAGGGCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCGGATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACCCAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTGGACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAAGATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGATATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGTCATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAACTGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAGTGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTATCGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCAATGTTGATTGAAATTTGCAGCATGCCATACATTCCACATATAATATATAATGCTCTAATTACATGCAGTTCTGCATTCCATGTATACACCATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGGCTGTGCCTAAATGTTATCTTTTCGCATGAGCATAGACCATGTGGTTGTGCCTAAATTATCTTTTCACGTGAGCAATATATATGGACTACGCAATTGC] [+] EMBL CB641200 [ CAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATAGGGGGAGAAGGCGTATGCGTACGACGCGGGCTGCA ] [+] EMBL CB641176 [ CAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACA ] consensusID : consensus_7051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [TAATGAGTGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTATCATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTATGCAACATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGCATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTTCCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCATTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAATTGCTGANNNNNNTCNNNATAGAT] [+] EMBL CF196701 [TAATGAGTGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTATCATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTATGCAACATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGCATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTTCCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCATTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAATTGCTGANNNNNNTCNNNATAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7051#0 GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGC 60 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 GCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCG 120 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 AATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGC 180 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 TGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGAC 240 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 CCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCG 300 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 GAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCA 360 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 AGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATG 420 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 CAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCA 480 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 AGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCC 540 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 GTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGC 600 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 AGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATAGGGGAGAGG 660 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 GCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCG 720 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 GATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACC 780 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 CAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTG 840 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 GACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAA 900 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 GATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGAT 960 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 ATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGT 1020 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 CATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAAC 1080 consensus_7051#1 ------------------------------------------------------------ consensus_7051#0 TGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAG 1140 consensus_7051#1 -----------------------------------------------------TAATGAG 7 ******* consensus_7051#0 TGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTAT 1200 consensus_7051#1 TGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTAT 67 *********** ** ******************* ************ ************ consensus_7051#0 CGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGT 1260 consensus_7051#1 CATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGT 127 * *************** ****************************************** consensus_7051#0 GAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCA 1320 consensus_7051#1 GAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTA-TGCAACATATTTGCATT 186 ***** ******************************* ** * *** * ** consensus_7051#0 ATGTTGATTGAAATTTGCAGCATGCCAT------------ACAT-----TCCACATATAA 1363 consensus_7051#1 GCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAG 246 * * ** *** *** *** **** * ** *** consensus_7051#0 TATATAATGCTCTAATTACATGCAGTTCT---GCATTCCATGTATACACCATAT--TTGC 1418 consensus_7051#1 ACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGC 306 ** *** * * ** ** ** * ** * ** *** ** * * **** consensus_7051#0 ATTGCACTACAT---TCAACTT-GAAGCTCAACATTGAA-GTGTGAAAACATAATTATTT 1473 consensus_7051#1 ATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTT 366 ** * ** * * *** * ** **** * * * *** ** *** consensus_7051#0 CCAGATAGACCATGGCTGTG--CCTAAATGTTATCTTT----TCGCATGAGCATAGACCA 1527 consensus_7051#1 CCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCA 426 ** * * *** ** * * * ** *** * * * ** consensus_7051#0 TGTGGTTG---TGCCTAAA------------TTATCTTTTCACGTGAGC-AATATATATG 1571 consensus_7051#1 TTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAAT 486 * *** * ** * ***** ** * * * consensus_7051#0 GACTACGCAATTGC--------- 1585 consensus_7051#1 TGCTGANNNNNNTCNNNATAGAT 509 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||