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Oryza sativa
cluster # 7052 cluster # 7052       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7052#0 length = 1144 sequences # 4  

consensusID : consensus_7052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1144
fasta sequence
                              [CAGCACACATCTCGTCCAGTCCATCCATGGCGAGCCTGAGCGTGCCGCCGGTGCCGACGGACCCGCGGCGCGACGCGATCGACCTCCACAGGGCGTTCAAGGGGTTCGGCTGCGACGCCACGGCGGTGACCGCCATCCTCGCCCACCGCGACGCCTCCCAGCGCGCCCTAATCCGGCGCCACTACGCGGCGGTCTACCACCAGGACCTCCTCCACCGCCTCGCCGCCGAGCTCTCGGGCCACCACAAGCGCGCCGTCCTGCTCTGGGTGCTCGACCCGGCGTCCCGCGACGCCGCCGTCCTCCACCAGGCGCTCAACGGCGACGTCACCGACATGAGGGCGGCCACCGAGGTGGTGTGCTCCAGGACGCCGTCGCAGCTGCTCGTGGTGAGGCAGGCCTACCTCGCCAGGTTCGGCGGCGGCGGCGGCGGCGGCCTCGAGCACGACGTCGCCGTCAGGGCGTCCGGCGACCACCAGAGGCTGCTTCTGGCGTACCTGCGCTCGCCGCGGTACGAGGGGCCCGAGGTGGTCGACATGGCGGCGGCGGCGCGCGACGCCAGGGAGCTGTAC-AGGGCCGG-CGAGAGGCGGCTCGGCACC-GACG-AGAGGA-CGTTC-ATCCGCGTC-TTCTCCG-AG-CGC-AGCGCCG-CCCACATGGCGG-CCGTCGCCGCCGCGTA-CCACCACATGTAC-GACC-GCTCCC-TC-GAGAAGG-CT-GTGAAGAGTGAAAC-TTCAGGGAACTTT--GGG-TTTGG-CCTGC-TGACAATCCTCAGGTGCGCCG-AGAGCCCGGCCAAGTACTTCG-CCAAGGTGCTCCACGAGGCGATGAAGGGGCTGGGCACCAACGACACGACGCTGATCAGGGTGGTGACGACGAGGGCGGAGGTGGACATGCAGTACATCAAGGCGGAGTACCACCGGAGCTACAAGCGCTCGCTCGCCGACGCCGTCCACTCCGAGACCTCCGGCAACTACCGCACCTTCCTCCTCTCCCTCATCGGCCGCGACCGCTAACGTCGATTGGTTTCGGTCTCTTTGAGCGTGTGTTAAGGGACGCATTTGTTCCATAGCGCACAAACATGGCAATTATTTATGTGCGTGTGTAGTGGTGTGTTCGAACGTTCGTTTTTCGTGTAATAAAAAAAATTGAGTTTGCTGTCTAAAAA]

[+] EMBL AK059408             [CAGCACACATCTCGTCCAGTCCATCCATGGCGAGCCTGAGCGTGCCGCCGGTGCCGACGGACCCGCGGCGCGACGCGATCGACCTCCACAGGGCGTTCAAGGGGTTCGGCTGCGACGCCACGGCGGTGACCGCCATCCTCGCCCACCGCGACGCCTCCCAGCGCGCCCTAATCCGGCGCCACTACGCGGCGGTCTACCACCAGGACCTCCTCCACCGCCTCGCCGCCGAGCTCTCGGGCCACCACAAGCGCGCCGTCCTGCTCTGGGTGCTCGACCCGGCGTCCCGCGACGCCGCCGTCCTCCACCAGGCGCTCAACGGCGACGTCACCGACATGAGGGCGGCCACCGAGGTGGTGTGCTCCAGGACGCCGTCGCAGCTGCTCGTGGTGAGGCAGGCCTACCTCGCCAGGTTCGGCGGCGGCGGCGGCGGCGGCCTCGAGCACGACGTCGCCGTCAGGGCGTCCGGCGACCACCAGAGGCTGCTTCTGGCGTACCTGCGCTCGCCGCGGTACGAGGGGCCCGAGGTGGTCGACATGGCGGCGGCGGCGCGCGACGCCAGGGAGCTGTAC AGGGCCGG CGAGAGGCGGCTCGGCACC GACG AGAGGA CGTTC ATCCGCGTC TTCTCCG AG CGC AGCGCCG CCCACATGGCGG CCGTCGCCGCCGCGTA CCACCACATGTAC GACC GCTCCC TC GAGAAGG CT GTGAAGAGTGAAAC TTCAGGGAACTTT  GGG TTTGG CCTGC TGACAATCCTCAGGTGCGCCG AGAGCCCGGCCAAGTACTTCG CCAAGGTGCTCCACGAGGCGATGAAGGGGCTGGGCACCAACGACACGACGCTGATCAGGGTGGTGACGACGAGGGCGGAGGTGGACATGCAGTACATCAAGGCGGAGTACCACCGGAGCTACAAGCGCTCGCTCGCCGACGCCGTCCACTCCGAGACCTCCGGCAACTACCGCACCTTCCTCCTCTCCCTCATCGGCCGCGACCGCTAACGTCGATTGGTTTCGGTCTCTTTGAGCGTGTGTTAAGGGACGCATTTGTTCCATAGCGCACAAACATGGCAATTATTTATGTGCGTGTGTAGTGGTGTGTTCGAACGTTCGTTTTTCGTGTAATAAAAAAAATTGAGTTTG           ]
[+] EMBL AK104119             [   CACACATCTCGTCCAGTCCATCCATGGCGAGCCTGAGCGTGCCGCCGGTGCCGACGGACCCGCGGCGCGACGCGATCGACCTCCACAGGGCGTTCAAGGGGTTCGGCTGCGACGCCACGGCGGTGACCGCCATCCTCGCCCACCGCGACGCCTCCCAGCGCGCCCTAATCCGGCGCCACTACGCGGCGGTCTACCACCAGGACCTCCTCCACCGCCTCGCCGCCGAGCTCTCGGGCCACCACAAGCGCGCCGTCCTGCTCTGGGTGCTCGACCCGGCGTCCCGCGACGCCGCCGTCCTCCACCAGGCGCTCAACGGCGACGTCACCGACATGAGGGCGGCCACCGAGGTGGTGTGCTCCAGGACGCCGTCGCAGCTGCTCGTGGTGAGGCAGGCCTACCTCGCCAGGTTCGGCGGCGGCGGCGGCGGCGGCCTCGAGCACGACGTCGCCGTCAGGGCGTCCGGCGACCACCAGAGGCTGCTTCTGGCGTACCTGCGCTCGCCGCGGTACGAGGGGCCCGAGGTGGTCGACATGGCGGCGGCGGCGCGCGACGCCAGGGAGCTGTAC AGGGCCGG CGAGAGGCGGCTCGGCACC GACG AGAGGA CGTTC ATCCGCGTC TTCTCCG AG CGC AGCGCCG CCCACATGGCGG CCGTCGCCGCCGCGTA CCACCACATGTAC GACC GCTCCC TC GAGAAGG CT GTGAAGAGTGAAAC TTCAGGGAACTTT  GGG TTTGG CCTGC TGACAATCCTCAGGTGCGCCG AGAGCCCGGCCAAGTACTTCG CCAAGGTGCTCCACGAGGCGATGAAGGGGCTGGGCACCAACGACACGACGCTGATCAGGGTGGTGACGACGAGGGCGGAGGTGGACATGCAGTACATCAAGGCGGAGTACCACCGGAGCTACAAGCGCTCGCTCGCCGACGCCGTCCACTCCGAGACCTCCGGCAACTACCGCACCTTCCTCCTCTCCCTCATCGGCCGCGACCGCTAACGTCGATTGGTTTCGGTCTCTTTGAGCGTGTGTTAAGGGACGCATTTGTTCCATAGCGCACAAACATGGCAATTATTTATGTGCGTGTGTAGTGGTGTGTTCGAACGTTCGTTTTTCGTGTAATAAAAAAAATTGAG               ]
[+] EMBL AU162617             [         TCTCGTCCAGTCCATCCATGGCGAGCCTGAGCGTGCCGCCGGTGCCGACGGACCCGCGGCGCGACGCGATCGACCTCCACAGGGCGTTCAAGGGGTTCGGCTGCGACGCCACGGCGGTGACCGCCATCCTCGCCCACCGCGACGCCTCCCAGCGCGCCCTAATCCGGCGCCACTACGCGGCGGTCTACCACCAGGACCTCCTCCACCGCCTCGCCGCCGAGCTCTCGGGCCACCACAAGCGCGCCGTCCTGCTCTGGGTGCTCGACCCGGCGTCCCGCGACGCCGCCGTCCTCCACCAGGCGCTCAACGGCGACGTCACCGACATGAGGGCGGCCACCGAGGTGGTGTGCTCCAGGACGCCGTCGCAGCTGCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU071054             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GANCTGTACAAGGGCCGGCCAAAAGGCGGCTCGGCACCGGACGAAGAGGACCTTTCAATCCGCGTCTTTTTCCGAAGCCGCAAGCGCCGCCCCACATGGCGGCCCGTCGCCGCCGCGTACCCACCACATGTACGGACCGGTTCCCTTCGGAGAAGGCCTNTTGAAGAGTGAAACTTTCAGGGAACTTTTGGGGTTTTGGCCCTGCTTGACAATCCTCAGGTGCGCCGAAGAGCCCGGCCAAGTACTTCGCCCAAGGTGCTCCACGAGGCGATGAAGGGGCTGGGCACCAACGACACGACGCTGATCAGGGTGGTGACGACGAGGGCGGAGGTGGACATGCAGTACATCAAGGCGGAGTACCACCGGAGCTACAAGCGCTCGCTCGCCGACGCCGTCCACTCCGAGACCTCCGGCAACTACCGCACCTTCCTCCTCTCCCTCATCGGCCGCGACCGCTAACGTCGATTGGTTTCGGTCTCTTTGAGCGTGTGTTAAGGGACGCATTTGTTCCATAGCGCACAAACATGGCAATTATTTATGTGCGTGTGTAGTGGTGTGTTCGAACGTTCGTTTTTCGTGTAATAAAAAAAATTGAGTTTGCTGTCTAAAAA]


>consensus_7052#0 CAGCACACATCTCGTCCAGTCCATCCATGGCGAGCCTGAGCGTGCCGCCGGTGCCGACGG ACCCGCGGCGCGACGCGATCGACCTCCACAGGGCGTTCAAGGGGTTCGGCTGCGACGCCA CGGCGGTGACCGCCATCCTCGCCCACCGCGACGCCTCCCAGCGCGCCCTAATCCGGCGCC ACTACGCGGCGGTCTACCACCAGGACCTCCTCCACCGCCTCGCCGCCGAGCTCTCGGGCC ACCACAAGCGCGCCGTCCTGCTCTGGGTGCTCGACCCGGCGTCCCGCGACGCCGCCGTCC TCCACCAGGCGCTCAACGGCGACGTCACCGACATGAGGGCGGCCACCGAGGTGGTGTGCT CCAGGACGCCGTCGCAGCTGCTCGTGGTGAGGCAGGCCTACCTCGCCAGGTTCGGCGGCG GCGGCGGCGGCGGCCTCGAGCACGACGTCGCCGTCAGGGCGTCCGGCGACCACCAGAGGC TGCTTCTGGCGTACCTGCGCTCGCCGCGGTACGAGGGGCCCGAGGTGGTCGACATGGCGG CGGCGGCGCGCGACGCCAGGGAGCTGTACAGGGCCGGCGAGAGGCGGCTCGGCACCGACG AGAGGACGTTCATCCGCGTCTTCTCCGAGCGCAGCGCCGCCCACATGGCGGCCGTCGCCG CCGCGTACCACCACATGTACGACCGCTCCCTCGAGAAGGCTGTGAAGAGTGAAACTTCAG GGAACTTTGGGTTTGGCCTGCTGACAATCCTCAGGTGCGCCGAGAGCCCGGCCAAGTACT TCGCCAAGGTGCTCCACGAGGCGATGAAGGGGCTGGGCACCAACGACACGACGCTGATCA GGGTGGTGACGACGAGGGCGGAGGTGGACATGCAGTACATCAAGGCGGAGTACCACCGGA GCTACAAGCGCTCGCTCGCCGACGCCGTCCACTCCGAGACCTCCGGCAACTACCGCACCT TCCTCCTCTCCCTCATCGGCCGCGACCGCTAACGTCGATTGGTTTCGGTCTCTTTGAGCG TGTGTTAAGGGACGCATTTGTTCCATAGCGCACAAACATGGCAATTATTTATGTGCGTGT GTAGTGGTGTGTTCGAACGTTCGTTTTTCGTGTAATAAAAAAAATTGAGTTTGCTGTCTA AAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)