These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2272 fasta sequence [TCGTCGCGATGGACACGCCATTGCTGCTGCTGCTTCCCTTCCTGGCGGCATGTCTGCTCGCGCCGCGGCACGCGGCGGA-GGCGGCCGTCACGAGCTGCGCGCCGAGGAGGTGCGGGAACGTGACCATCGCCTACCCGTTCTGGCTGCCGGACTCATCGCCGCCGCCGTCGTCGTCGTCCGCGCCGTGCGGCCCCGCGGCGTTCCAGGTGAACTGCGACAACGGCAGCCGCGCGTCGCTGGCCCGCTCCTTCCGCAGCGGGTACAAGATCCTCGGCGTGTCGTACGCCAACCGCACCGTCGTCGTCGCCAACGACAACGTCCAGACCGACGCCAGCGGCTGCCCGGTGCCCAAGATCGACGTCCCCGCCAGCCTCACCCTCGCGCCGTTCACCGCCAGCCCGGCCAACAGCCAGCTCGTCTTCCTCTTCAACTGCACCAGCAGCAGCAGGCCGCCGCCGGCAGGGTTCGTCAACGTCACGTGCCCGGGAGCGAAGGCCGTGGTCCGGCTCGACACGAGCTACAACAACACCGCCGCCAGAGTGGTCGCCGGAGGTTGCGACTACGCGGCCGTTCCGGTGGTCGGCGTGCCGGGGGCGAGCCCGACGGACTACCCGCAGCTGCTCCGGGGAGGCTACATGCTGGAGTGGAGGGCGCCCGCCGGCGACTGCATGGCGTGCAATGCCAGCGGCGGCCAGTGTGGCTACGACGCCGACACGGAGGCGTTCGCCTGCATCTGCTCCGACGGCTCATCGCGCCCGGGGATATGTGATGCAAAGAAGTCCGGGAACAAGGTCATCCTGATAGTGTCACTGTCGATCTGTGCGACTGGGTTGGTGCTATTGGCATGCATCGCCACCGTCTACAAGTGTCGCCGACGTATGCAAAATCGTTTCAGTTTTCTGAACGCCATGGACGGTGCAAGCAGAACGGATACTGCAAAGGTGGAGAAGCTGCTGCAGAGTTACGGATCCCTAGCTCCCCGGAGGTTCAGGTACTCGGAGCTGAAGAAGATAACGAAGTCCTTCAGCCAGCGGCTCGGCGAGGGCGGCTACGGCACGGTGTTCAGCGGCACGCTCGCCGACGGCCGCGCCGTCGCCGTCAAGTTCCTCCACCACTCCAAGCCCAACGGCGAGGAGTTCCTCAACGAGGTGGTCAGCATTGGCCGGACGAGCCATGTCAACATCGTCTCCCTGCTCGGCTTCTGCCTCGAGGGCTCCAAGCGAGCCCTCGTCTACGAGTACATGCCCAATGGCTCGCTGGACAAGTACATCTACTCGACGTCGGCGGCGGCGGCGGCGGAGGCGGAGGAGGCGGAGGCGACGGCGAGCCCTGACAGGGATGTTCTGGGGTGGAAGGTGCTGCAGGAGATCGCCGTCGGCGTGGCGCGGGGGCTGGAGTACCTGCACGACGGGTGCAACACGCGGATCATCCACTTCGACATCAAGCCGCACAACGTGCTCCTCGACGAGGGATTCCGGCCCAAGATCGCCGACTTCGGGATGGCGAAGCTGTGCAACCCAAAGGAGAGCATCCTGTCGATGGCGGACACGAGGGGGACGATAGGGTTCATCGCGCCGGAGGTGTTCTCCCGCGGGTTCGGCGACATCTCGACCAAGTCCGACGTGTACAGCTACGGGATGCTGCTGCTGGAGATGGTCGGCGGCGGGAGCAACGTCAAGGCCTACGCCGAGAAGGGCGCCAGCGGCACGTTCTTCCCGCTCTGGGTCTACGACCACCTGCTCGAGGACGGCGGCGTGCTGCAGAGCGTCGCCGCCGCCGCCGCCGCCACGGCCGGCGGCGGCGCCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGTGGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGGAGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCCCGTCGCGGCCGTCGAGCTACCCCTCCTCTGCCTCGGATTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAACTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAACAACAAAATTAGACGTTATTACTGTTTGAATCATTAATTCGTTCTCTTATGGTTTTCTGTGGAAATCATGTACTACTCCTATTCAGTTTTAGTTTAACTT] [+] EMBL AK110482 [TCGTCGCGATGGACACGCCATTGCTGCTGCTGCTTCCCTTCCTGGCGGCATGTCTGCTCGCGCCGCGGCACGCGGCGGA GGCGGCCGTCACGAGCTGCGCGCCGAGGAGGTGCGGGAACGTGACCATCGCCTACCCGTTCTGGCTGCCGGACTCATCGCCGCCGCCGTCGTCGTCGTCCGCGCCGTGCGGCCCCGCGGCGTTCCAGGTGAACTGCGACAACGGCAGCCGCGCGTCGCTGGCCCGCTCCTTCCGCAGCGGGTACAAGATCCTCGGCGTGTCGTACGCCAACCGCACCGTCGTCGTCGCCAACGACAACGTCCAGACCGACGCCAGCGGCTGCCCGGTGCCCAAGATCGACGTCCCCGCCAGCCTCACCCTCGCGCCGTTCACCGCCAGCCCGGCCAACAGCCAGCTCGTCTTCCTCTTCAACTGCACCAGCAGCAGCAGGCCGCCGCCGGCAGGGTTCGTCAACGTCACGTGCCCGGGAGCGAAGGCCGTGGTCCGGCTCGACACGAGCTACAACAACACCGCCGCCAGAGTGGTCGCCGGAGGTTGCGACTACGCGGCCGTTCCGGTGGTCGGCGTGCCGGGGGCGAGCCCGACGGACTACCCGCAGCTGCTCCGGGGAGGCTACATGCTGGAGTGGAGGGCGCCCGCCGGCGACTGCATGGCGTGCAATGCCAGCGGCGGCCAGTGTGGCTACGACGCCGACACGGAGGCGTTCGCCTGCATCTGCTCCGACGGCTCATCGCGCCCGGGGATATGTGATGCAAAGAAGTCCGGGAACAAGGTCATCCTGATAGTGTCACTGTCGATCTGTGCGACTGGGTTGGTGCTATTGGCATGCATCGCCACCGTCTACAAGTGTCGCCGACGTATGCAAAATCGTTTCAGTTTTCTGAACGCCATGGACGGTGCAAGCAGAACGGATACTGCAAAGGTGGAGAAGCTGCTGCAGAGTTACGGATCCCTAGCTCCCCGGAGGTTCAGGTACTCGGAGCTGAAGAAGATAACGAAGTCCTTCAGCCAGCGGCTCGGCGAGGGCGGCTACGGCACGGTGTTCAGCGGCACGCTCGCCGACGGCCGCGCCGTCGCCGTCAAGTTCCTCCACCACTCCAAGCCCAACGGCGAGGAGTTCCTCAACGAGGTGGTCAGCATTGGCCGGACGAGCCATGTCAACATCGTCTCCCTGCTCGGCTTCTGCCTCGAGGGCTCCAAGCGAGCCCTCGTCTACGAGTACATGCCCAATGGCTCGCTGGACAAGTACATCTACTCGACGTCGGCGGCGGCGGCGGCGGAGGCGGAGGAGGCGGAGGCGACGGCGAGCCCTGACAGGGATGTTCTGGGGTGGAAGGTGCTGCAGGAGATCGCCGTCGGCGTGGCGCGGGGGCTGGAGTACCTGCACGACGGGTGCAACACGCGGATCATCCACTTCGACATCAAGCCGCACAACGTGCTCCTCGACGAGGGATTCCGGCCCAAGATCGCCGACTTCGGGATGGCGAAGCTGTGCAACCCAAAGGAGAGCATCCTGTCGATGGCGGACACGAGGGGGACGATAGGGTTCATCGCGCCGGAGGTGTTCTCCCGCGGGTTCGGCGACATCTCGACCAAGTCCGACGTGTACAGCTACGGGATGCTGCTGCTGGAGATGGTCGGCGGCGGGAGCAACGTCAAGGCCTACGCCGAGAAGGGCGCCAGCGGCACGTTCTTCCCGCTCTGGGTCTACGACCACCTGCTCGAGGACGGCGGCGTGCTGCAGAGCGTCGCCGCCGCCGCCGCCGCCACGGCCGGCGGCGGCGCCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGTGGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGGAGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCCCGTCGCGGCCGTCGAGCTACCCCTCCTCTGCCTCGGATTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAACTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAACAACAAAATTAGACGTTATTACTGTTTGAATCATTAATTCGTTCTCTTATGGTTTTCTGTGGAAATCATGTACTACTCCTATTCAGTTTTAGTTTAACTT] [+] EMBL AU068105 [ TGCTGCTGCTTCCCTTCCTGGCGGCATGTCTGCTCGCGCCGCGGCACG GGANGGCGGCCGTCACGAGCTGCGCGCCGAGGAGGTGCGGGAACGTGACCATCGCCTACCCGTTCTGGCTGCCGGACTCATCGCCGCCGCCGTCGTCGTCGTCCGCGCCGTGCGGCCCCGCGGCGTTCCAGGTGAACTGCGACAACGGCAGCCGCGCGTCGCTGGCCCGCTCCTTCCGCAGCGGGTACAAGATCCTCGGCGTGTCGTACGCCAACCGCACCGTCGTCGTCGCCAACGACAACGTCCAGACCGACGCCAGCGGCTGCCCGGTGCCCAAGATCGACGTCTCCGCCAGCCTCACCCTCGCGCCGTTCACCGCCAGCCCGGCCAACAGC ] consensusID : consensus_7054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence [CTNCTCGAGGACNGCCGGCGTGNTGCAGAGCGTTNGCCGCCGCCGCCGCCGCCACGGCCGGCGGCTTTNCTCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGTGGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGGAGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCCCGTCGCGGCCGTCGAGCTACCCCTCNTCTGCCTCGGATTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAACTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAAC-AAC-AAAATTAGAC-GTTATTACTGTTTGAATCATTAATTCGTTCTCTTATGGTTTTCTGTGGAAAAAAAAAAAAAAA] [+] EMBL AU068106 [CTNCTCGAGGACNGCCGGCGTGNTGCAGAGCGTTNGCCGCCGCCGCCGCCGCCACGGCCGGCGGCTTTNCTCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGTGGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGGAGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCCCGTCGCGGCCGTCGAGCTACCCCTCNTCTGCCTCGGATTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAACTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAAC AAC AAAATTAGAC GTTATTACTGTTTGAATCATTAATTCGTTCTCTTATGGTTTTCTGTGGAAAAAAAAAAAAAAA] [+] EMBL AU166487 [ AGAAAAGCGTCCACGAGCTTTCCATGCCGCCGCGGCCGTACCACTNGAACTCGTCGTCCCCGTNGCGGCCGTCGAGCTACCCCTCCTNTGCCTCGGNTTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATNACTATACTTGAAGCNGACAACTGGCTAGTAGACTGTNAATTAAANAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAACTAACTAAAATTAGACTGTTATTACTGTTTGAATCATTAATTCGTTNTCTTATGGTTTTCTGTGGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7054#0 TCGTCGCGATGGACACGCCATTGCTGCTGCTGCTTCCCTTCCTGGCGGCATGTCTGCTCG 60 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CGCCGCGGCACGCGGCGGAGGCGGCCGTCACGAGCTGCGCGCCGAGGAGGTGCGGGAACG 120 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TGACCATCGCCTACCCGTTCTGGCTGCCGGACTCATCGCCGCCGCCGTCGTCGTCGTCCG 180 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CGCCGTGCGGCCCCGCGGCGTTCCAGGTGAACTGCGACAACGGCAGCCGCGCGTCGCTGG 240 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CCCGCTCCTTCCGCAGCGGGTACAAGATCCTCGGCGTGTCGTACGCCAACCGCACCGTCG 300 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TCGTCGCCAACGACAACGTCCAGACCGACGCCAGCGGCTGCCCGGTGCCCAAGATCGACG 360 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TCCCCGCCAGCCTCACCCTCGCGCCGTTCACCGCCAGCCCGGCCAACAGCCAGCTCGTCT 420 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TCCTCTTCAACTGCACCAGCAGCAGCAGGCCGCCGCCGGCAGGGTTCGTCAACGTCACGT 480 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 GCCCGGGAGCGAAGGCCGTGGTCCGGCTCGACACGAGCTACAACAACACCGCCGCCAGAG 540 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TGGTCGCCGGAGGTTGCGACTACGCGGCCGTTCCGGTGGTCGGCGTGCCGGGGGCGAGCC 600 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CGACGGACTACCCGCAGCTGCTCCGGGGAGGCTACATGCTGGAGTGGAGGGCGCCCGCCG 660 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 GCGACTGCATGGCGTGCAATGCCAGCGGCGGCCAGTGTGGCTACGACGCCGACACGGAGG 720 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CGTTCGCCTGCATCTGCTCCGACGGCTCATCGCGCCCGGGGATATGTGATGCAAAGAAGT 780 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CCGGGAACAAGGTCATCCTGATAGTGTCACTGTCGATCTGTGCGACTGGGTTGGTGCTAT 840 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TGGCATGCATCGCCACCGTCTACAAGTGTCGCCGACGTATGCAAAATCGTTTCAGTTTTC 900 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TGAACGCCATGGACGGTGCAAGCAGAACGGATACTGCAAAGGTGGAGAAGCTGCTGCAGA 960 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 GTTACGGATCCCTAGCTCCCCGGAGGTTCAGGTACTCGGAGCTGAAGAAGATAACGAAGT 1020 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CCTTCAGCCAGCGGCTCGGCGAGGGCGGCTACGGCACGGTGTTCAGCGGCACGCTCGCCG 1080 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 ACGGCCGCGCCGTCGCCGTCAAGTTCCTCCACCACTCCAAGCCCAACGGCGAGGAGTTCC 1140 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TCAACGAGGTGGTCAGCATTGGCCGGACGAGCCATGTCAACATCGTCTCCCTGCTCGGCT 1200 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TCTGCCTCGAGGGCTCCAAGCGAGCCCTCGTCTACGAGTACATGCCCAATGGCTCGCTGG 1260 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 ACAAGTACATCTACTCGACGTCGGCGGCGGCGGCGGCGGAGGCGGAGGAGGCGGAGGCGA 1320 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CGGCGAGCCCTGACAGGGATGTTCTGGGGTGGAAGGTGCTGCAGGAGATCGCCGTCGGCG 1380 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TGGCGCGGGGGCTGGAGTACCTGCACGACGGGTGCAACACGCGGATCATCCACTTCGACA 1440 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TCAAGCCGCACAACGTGCTCCTCGACGAGGGATTCCGGCCCAAGATCGCCGACTTCGGGA 1500 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TGGCGAAGCTGTGCAACCCAAAGGAGAGCATCCTGTCGATGGCGGACACGAGGGGGACGA 1560 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TAGGGTTCATCGCGCCGGAGGTGTTCTCCCGCGGGTTCGGCGACATCTCGACCAAGTCCG 1620 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 ACGTGTACAGCTACGGGATGCTGCTGCTGGAGATGGTCGGCGGCGGGAGCAACGTCAAGG 1680 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CCTACGCCGAGAAGGGCGCCAGCGGCACGTTCTTCCCGCTCTGGGTCTACGACCACCTGC 1740 consensus_7054#1 --------------------------------------------------------CTNC 4 ** * consensus_7054#0 TCGAGGACGGC-GGCGTGCTGCAGAGCGT-CGCCGCCGCCGCCGCCGCCACGGCCGGCGG 1798 consensus_7054#1 TCGAGGACNGCCGGCGTGNTGCAGAGCGTTNGCCGCCGCCGCCGCCGCCACGGCCGGCGG 64 ******** ** ****** ********** ***************************** consensus_7054#0 CGGCGC-CGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGT 1857 consensus_7054#1 CTTTNCTCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGT 124 * * ***************************************************** consensus_7054#0 GGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGG 1917 consensus_7054#1 GGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGG 184 ************************************************************ consensus_7054#0 AGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCC 1977 consensus_7054#1 AGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCC 244 ************************************************************ consensus_7054#0 CGTCGCGGCCGTCGAGCTACCCCTCCTCTGCCTCGGATTTCACGCAGCGATCAAGGTTAT 2037 consensus_7054#1 CGTCGCGGCCGTCGAGCTACCCCTCNTCTGCCTCGGATTTCACGCAGCGATCAAGGTTAT 304 ************************* ********************************** consensus_7054#0 CAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAA 2097 consensus_7054#1 CAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAA 364 ************************************************************ consensus_7054#0 CTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGA 2157 consensus_7054#1 CTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGA 424 ************************************************************ consensus_7054#0 GCAGATTAGCAAGAACAACAAAATTAGACGTTATTACTGTTTGAATCATTAATTCGTTCT 2217 consensus_7054#1 GCAGATTAGCAAGAACAACAAAATTAGACGTTATTACTGTTTGAATCATTAATTCGTTCT 484 ************************************************************ consensus_7054#0 CTTATGGTTTTCTGTGGAAATCATGTACTACTCCTATTCAGTTTTAGTTTAACTT 2272 consensus_7054#1 CTTATGGTTTTCTGTGGAAAAAAAAAAAAAAA----------------------- 516 ******************** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||