These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2304 fasta sequence [CCCACCACCGCTCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCGCTCTCATCCATCCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCGCCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGAC--GAGGATGAGGAGTTCGGGGGCCGCGGGAGCGAC-GAGG-GCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGGTGCTAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACATCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGATCTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAAGCTTGGTCACAATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTGAAGCTGAGTCTGGTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGGATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTGGTCTAACAAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTCTGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGCCTCCCACCAACACCAAGGGGAAGTCGGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGCGCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACTCATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAGGAAGATTGGTCAAAATGCAGTTGTGCAAAGGAACACCTTCTCACTGGGATTCTGGTCGAACAAAGTGGTGCTCATTTGGCCCAACACTCTGGTGCTATGAACATGAAGCAGACTCTCCCAGGGATCTGATGATGCTCAGAGGAGATGTAAGAAACGAACAATCTCAGGAATGCAGCGCAAGAGGCTTGGACAAAATTAGGTAGTAGTAAAACATATATGCGTGTGTGTTGTTAGCTGTAAATATTACTTCATGGAGAAAATTAGGAAAGTACCAGCCTGGAAAATCTGCGAGTTATAAAATAGGATTGCATGTGAGAATGACATGTGGGGTCCTCACATGTGATTGTATTTTTCAACTTCGTGAATTCAGCTATGGTTCAAATTAAAATTGGCCTGTATGGATGAG] [+] EMBL AK106673 [CCCACCACCGCTCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCGCTCTCATCCATCCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCGCCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGAC GAGGATGAGGAGTTCGGGGGCCGCGGGAGCGAC GAGG GCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGGTGCTAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACATCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGATCTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAAGCTTGGTCACAATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTGAAGCTGAGTCTGGTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGGATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTGGTCTAACAAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTCTGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGCCTCCCACCAACACCAAGGGGAAGTCGGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGCGCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACTCATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAGGAAGATTGGTCAAAATGCAGTTGTGCAAAGGAACACCTTCTCACTGGGATTCTGGTCGAACAAAGTGGTGCTCATTTGGCCCAACACTCTGGTGCTATGAACATGAAGCAGACTCTCCCAGGGATCTGATGATGCTCAGAGGAGATGTAAGAAACGAACAATCTCAGGAATGCAGCGCAAGAGGCTTGGACAAAATTAGGTAGTAGTAAAACATATATGCGTGTGTGTTGTTAGCTGTAAATATTACTTCATGGAGAAAATTAGGAAAGTACCAGCCTGGAAAATCTGCGAGTTATAAAATAGGATTGCATGTGAGAATGACATGTGGGGTCCTCACATGTGATTGTATTTTTCAACTTCGTGAATTCAGCTATGGTTCAAATTAAAATTGGCCTGTATGGATGAG] [+] EMBL OS1042A [ TCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCGCTCTCATCCATNCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCGCCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGNCGGCGGGAGCGGGAGC ACTGGAGGATGAGGAGTTCGGGGGCCGCGGGAGCANCGGAGGNGCTGTGAGGCCGACGAGGT ] [+] EMBL CB660724 [ ACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACATTCAGGCAGAAAGCACAAGCAGATCTGCTAAAAGTTGAAAATG ] consensusID : consensus_7056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TCCAAATAACTCCATATAAGTTGCTGGTCTTTTCATTCTCTCCCTACAACTTAATTTCATACAAGATATTCTTCATAAGTTCTTTTTCTTTTCAATTTCCCCCATTTGTCTTGTTTCTAGTGATTCTCGTCATGCTCATCGATTTCTCACATCCTATGCACCTCCCGCATGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTT] [+] EMBL CB641374 [TCCAAATAACTCCATATAAGTTGCTGGTCTTTTCATTCTCTCCCTACAACTTAATTTCATACAAGATATTCTTCATAAGTTCTTTTTCTTTTCAATTTCCCCCATTTGTCTTGTTTCTAGTGATTCTCGTCATGCTCATCGATTTCTCACATCCTATGCACCTCCCGCATGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7056#0 CCCACCACCGCTCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCG 60 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 CTCTCATCCATCCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCG 120 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 CCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTG 180 consensus_7056#1 --TCCAAATAA-CTCC-----ATATAAGTTGCTGGTCTTTTCATTCTCTCCCTACAACT- 51 * ** **** * * ** **** * * * **** *** consensus_7056#0 CAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGACGAGGATGAGGAGTTCGGGGG 240 consensus_7056#1 TAATTTCATACAAGATATTCTTCATAAGTTCTTTTTCTTTTCAATTTCC---CCCATTTG 108 * * * ** * * * * * * consensus_7056#0 CCGCGGGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAG---GT 297 consensus_7056#1 TCTTGTTTCTAGTGATTCTCGTCATGCTCATCGATTTCTCACATCCTATGCACCTCCCGC 168 * * ** ** * ** * * ** * * * * * consensus_7056#0 GCTAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGC 357 consensus_7056#1 ATGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGC 228 ********************************************************* consensus_7056#0 CGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTAC 417 consensus_7056#1 CGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTAC 288 ************************************************************ consensus_7056#0 AAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGT 477 consensus_7056#1 AAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGT 348 ************************************************************ consensus_7056#0 TCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGA 537 consensus_7056#1 TCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGA 408 ************************************************************ consensus_7056#0 ATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTAT 597 consensus_7056#1 ATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTT----------- 457 ************************************************* consensus_7056#0 TGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTG 657 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGT 717 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 CTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGA 777 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTT 837 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCA 897 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGC 957 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAA 1017 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 CGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTT 1077 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTT 1137 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 TATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCA 1197 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 AGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCG 1257 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 TCCAATCAAACATCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGAT 1317 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 CTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAA 1377 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GCTTGGTCACAATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACT 1437 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 ATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTGAAGCTGAGTCTG 1497 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGG 1557 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 ATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTG 1617 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GTCTAACAAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTC 1677 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 TGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGC 1737 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 CTCCCACCAACACCAAGGGGAAGTCGGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGC 1797 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACT 1857 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 CATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAGGAAGATTGGTCAAAATGCA 1917 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GTTGTGCAAAGGAACACCTTCTCACTGGGATTCTGGTCGAACAAAGTGGTGCTCATTTGG 1977 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 CCCAACACTCTGGTGCTATGAACATGAAGCAGACTCTCCCAGGGATCTGATGATGCTCAG 2037 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 AGGAGATGTAAGAAACGAACAATCTCAGGAATGCAGCGCAAGAGGCTTGGACAAAATTAG 2097 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GTAGTAGTAAAACATATATGCGTGTGTGTTGTTAGCTGTAAATATTACTTCATGGAGAAA 2157 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 ATTAGGAAAGTACCAGCCTGGAAAATCTGCGAGTTATAAAATAGGATTGCATGTGAGAAT 2217 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 GACATGTGGGGTCCTCACATGTGATTGTATTTTTCAACTTCGTGAATTCAGCTATGGTTC 2277 consensus_7056#1 ------------------------------------------------------------ consensus_7056#0 AAATTAAAATTGGCCTGTATGGATGAG 2304 consensus_7056#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||