Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7063 cluster # 7063       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7063#0 length = 2631 sequences # 3  
consensus_7063#1 length = 556 sequences # 1  

consensusID : consensus_7063#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2631
fasta sequence
                              [CGAATGAAACAGTTTTCAACGTTTCTTATCCATCGAGAGACAAGGAAGAAGTGTTGAACCCGTGGCGTCGGCTCCCCGCTCCCCCAACTCGCGCGGTTGCTGGTTGCTGCCGCCATCGCTTCCTCCCATTCTCTTCTCCACGACGGGGTTACCGAGCTCCGGCGAACCCGCCATGGCGGACTGGCCGACGGCAGAGCCGAGGCGAATCAGCGGCAGACAGGAGAACCTCCCCAATACGCTCTCCTTTTCCAGTTTCCCCAACTCTAGCTAGAAGCCAATCAGAAGCGCCAGCCAGGGGAAAGCGGGGAGTCGTCGATCCCTCTCGTCGCCGTTGCTCTCGTCGGCATCACCTGACATTATTGTGCATGAGCATTCGACGACCTAACACCCGGTATAGTTTGCTTCCTCCACCTCGAGCACAAGCTGTTCGATGAAATGCCTACCAAGGTTAAGGTTCTGTCACCTTTTTTTTTGAATTCATTGAATATAGAAGGGAACAATATTTACAAGTAAGGAGTAATGGGATTTACAGAAAAGACGATCGGAACTACGGCAACATCTCTGCTAGTCGTTTGGCTCCCGCCAAAGCCCAAGATTTCGACTCCTGGTTCTGTCACTTTCTTGTTCCAAAACTGATGAGCATCCTGCGTTCCTTTGCTATTTTGCACAACCTTGTGGAACAATAATAAAAGAAAATAATTAGTCTTCCATATTTGGTTGTAGTTCTATAGATGACAAGTTAAAGTTAGTTCATCTTTTTGGTATATTACACATAAGAATCCTTCGAATTCGTTTGTTGCAGATTGATAAGTCGACATTGATTCACATATCCATTTTTGCATGCTGATGGTGTTTTCTGTGCTCTAAGTAAGGTCCGGATCTGAATATAAAACTGAATGGCATCTGTAGTGTTTGGTCAAAGGAATGTGTGTGTCTTTCCCCTGAGGAGGCACATATTGGATGAGGTGTTTCAGCATGGTCCTTGTAATTGTAGCACACAGAGGAGGTGGAAAAAGCCAATTGATTCAGCAAGAACTCGTCTGGAGGGCAGAATAAGGGATCATAAACTGGACAAGCTGATGATTCAACTGAAGAACCTGAGGCTAGCTTTGGATTTGCATGAGTTCATATCTCAGCAGAGGAATGGCTACGCATCTCTCCAACTCCTCTCCAGGTGGAGACATGAAGTCGGGCTAAACATTGAGATTGGGGCTTTCCTTAAGAAATATCCCCACATCTTCGACATTTATGTGCACCCAATAAAGAATAACCAATGCTGTAAGGTCACTCCAAAGATGGCTGATTTGATTGCAGAAGAAGATGCTGCCATCTGGGAAAATGAGCCTGCTATTGTTAAACGGCTGAAGAAACTCCTCATGCTGTCGACAGATGGAACTCTGAATATGCATGCACTGTGGCTCATAAGAAGAGAACTTGGGTTGCCCAATGACTAAAGGTGCTCTATACTACCAAACCATCGGTCAGAGTTTTCTCTAGGTTCCCCCGATACTCTGACATTTGTCACTAGGGATGAAAATTTAGCTGTAGCCGATGTTGAAGAATGGAGAGTGAAGGAATATACAGAAAAATGGTTAGCTGAATCTGAGACAAAATATTCTTTTCCTATAAACTTTCCAACCGGCTTTAAGATTGAGAAAGGTTTTAGGGAAAAGCTTGGTAACTGGCAGAGGCTTCCCTACACCAAGGCTTATGAGAATAATGAATTGCATCCAATCCATAATGTTGAGCAGCTCGAGAAACATATTGTTGGCATTCTTCACGAACTTTTAAGCTTGACAGTGGAAAAGATGATACCACTTGAGAGGTTCTCCCATTTCAGAAGACCTTTTGATATGGAGGTAAACCTGAGGGAACTTATTCTTAAGCACCCTGGCATTTTCTACATCTCAACCAAAGGAAGCACACAAACTGTCCTCCTTAGAGAGAGTTACAGTAAGGGATGCTTGGTTGATCCTAACCCTGTCTACAATGTAAGAAGGAAAATGCTAGATCTTATTTTGTCAGGATGCCATGGGATTGATGAAACGGATGGTCCAATTCAGTTAGTTGAGGAGCACAATCAAGAAAGCAGTAATGTGTCATAGAATCACATGTGGCAGACAGATTCCGGATGCCTTGTCGGAAGCTCAAAGTGACATTTATCAAAGAATTAGCTATTTTAATCTCTGACATTGTTTATGGGCTTATGGGAGTACAATGTTGATAATGGTATGAACTTGAGACGTCGGTGGTGGAGCATCATCGGTTGAGGAATGTACTGATGTGCAAGCTAAGAAAGTCAGCTGTCCTGAGGGCCTACTCTGCACCCAGGGAAGAATGGATGCATCACGGTGCTTAGCAGCTAACAAAGGAAGATGCGCTTGAGCAGAATCAGTTGTCAACCTTGGTTCCTGTTCGACAGATCTACTATTATTTTTACGGTACTCCACTGATTTATTTTCACTGAAGAGATAGGTCCAATGAAGATTTAAGGGCAGTCATTGATGCTTTGAACTGGTCTATCATAAATGTTGAAACAGAACTCACGAGTGTTCAACTAGTGTATTGCTCTCGATCCCCCTTCAGAGGGTAACATTTACATATTTATACTAGATTACATGCAAAGGAAAT]

[+] EMBL AK111431             [CGAATGAAACAGTTTTCAACGTTTCTTATCCATCGAGAGACAAGGAAGAAGTGTTGAACCCGTGGCGTCGGCTCCCCGCTCCCCCAACTCGCGCGGTTGCTGGTTGCTGCCGCCATCGCTTCCTCCCATTCTCTTCTCCACGACGGGGTTACCGAGCTCCGGCGAACCCGCCATGGCGGACTGGCCGACGGCAGAGCCGAGGCGAATCAGCGGCAGACAGGAGAACCTCCCCAATACGCTCTCCTTTTCCAGTTTCCCCAACTCTAGCTAGAAGCCAATCAGAAGCGCCAGCCAGGGGAAAGCGGGGAGTCGTCGATCCCTCTCGTCGCCGTTGCTCTCGTCGGCATCACCTGACATTATTGTGCATGAGCATTCGACGACCTAACACCCGGTATAGTTTGCTTCCTCCACCTCGAGCACAAGCTGTTCGATGAAATGCCTACCAAGGTTAAGGTTCTGTCACCTTTTTTTTTGAATTCATTGAATATAGAAGGGAACAATATTTACAAGTAAGGAGTAATGGGATTTACAGAAAAGACGATCGGAACTACGGCAACATCTCTGCTAGTCGTTTGGCTCCCGCCAAAGCCCAAGATTTCGACTCCTGGTTCTGTCACTTTCTTGTTCCAAAACTGATGAGCATCCTGCGTTCCTTTGCTATTTTGCACAACCTTGTGGAACAATAATAAAAGAAAATAATTAGTCTTCCATATTTGGTTGTAGTTCTATAGATGACAAGTTAAAGTTAGTTCATCTTTTTGGTATATTACACATAAGAATCCTTCGAATTCGTTTGTTGCAGATTGATAAGTCGACATTGATTCACATATCCATTTTTGCATGCTGATGGTGTTTTCTGTGCTCTAAGTAAGGTCCGGATCTGAATATAAAACTGAATGGCATCTGTAGTGTTTGGTCAAAGGAATGTGTGTGTCTTTCCCCTGAGGAGGCACATATTGGATGAGGTGTTTCAGCATGGTCCTTGTAATTGTAGCACACAGAGGAGGTGGAAAAAGCCAATTGATTCAGCAAGAACTCGTCTGGAGGGCAGAATAAGGGATCATAAACTGGACAAGCTGATGATTCAACTGAAGAACCTGAGGCTAGCTTTGGATTTGCATGAGTTCATATCTCAGCAGAGGAATGGCTACGCATCTCTCCAACTCCTCTCCAGGTGGAGACATGAAGTCGGGCTAAACATTGAGATTGGGGCTTTCCTTAAGAAATATCCCCACATCTTCGACATTTATGTGCACCCAATAAAGAATAACCAATGCTGTAAGGTCACTCCAAAGATGGCTGATTTGATTGCAGAAGAAGATGCTGCCATCTGGGAAAATGAGCCTGCTATTGTTAAACGGCTGAAGAAACTCCTCATGCTGTCGACAGATGGAACTCTGAATATGCATGCACTGTGGCTCATAAGAAGAGAACTTGGGTTGCCCAATGACTAAAGGTGCTCTATACTACCAAACCATCGGTCAGAGTTTTCTCTAGGTTCCCCCGATACTCTGACATTTGTCACTAGGGATGAAAATTTAGCTGTAGCCGATGTTGAAGAATGGAGAGTGAAGGAATATACAGAAAAATGGTTAGCTGAATCTGAGACAAAATATTCTTTTCCTATAAACTTTCCAACCGGCTTTAAGATTGAGAAAGGTTTTAGGGAAAAGCTTGGTAACTGGCAGAGGCTTCCCTACACCAAGGCTTATGAGAATAATGAATTGCATCCAATCCATAATGTTGAGCAGCTCGAGAAACATATTGTTGGCATTCTTCACGAACTTTTAAGCTTGACAGTGGAAAAGATGATACCACTTGAGAGGTTCTCCCATTTCAGAAGACCTTTTGATATGGAGGTAAACCTGAGGGAACTTATTCTTAAGCACCCTGGCATTTTCTACATCTCAACCAAAGGAAGCACACAAACTGTCCTCCTTAGAGAGAGTTACAGTAAGGGATGCTTGGTTGATCCTAACCCTGTCTACAATGTAAGAAGGAAAATGCTAGATCTTATTTTGTCAGGATGCCATGGGATTGATGAAACGGATGGTCCAATTCAGTTAGTTGAGGAGCACAATCAAGAAAGCAGTAATGTGTCATAGAATCACATGTGGCAGACAGATTCCGGATGCCTTGTCGGAAGCTCAAAGTGACATTTATCAAAGAATTAGCTATTTTAATCTCTGACATTGTTTATGGGCTTATGGGAGTACAATGTTGATAATGGTATGAACTTGAGACGTCGGTGGTGGAGCATCATCGGTTGAGGAATGTACTGATGTGCAAGCTAAGAAAGTCAGCTGTCCTGAGGGCCTACTCTGCACCCAGGGAAGAATGGATGCATCACGGTGCTTAGCAGCTAACAAAGGAAGATGCGCTTGAGCAGAATCAGTTGTCAACCTTGGTTCCTGTTCGACAGATCTACTATTATTTTTACGGTACTCCACTGATTTATTTTCACTGAAGAGATAGGTCCAATGAAGATTTAAGGGCAGTCATTGATGCTTTGAACTGGTCTATCATAAAT                                                                                                     ]
[+] EMBL CB641938             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGAACCTGAGGCTAGCTTTGGATTTGCATGAGTTCATATCTCAGCAGAGGAATGGCTACGCATCTCTCCAACTCCTCTCCAGGTGGAGACATGAAGTCGGGCTAAACATTGAGATTGGGGCTTTCCTTAAGAAATATCCCCACATCTTCGACATTTATGTGCACCCAATAAAGAATAACCAATGCTGTAAGGTCACTCCAAAGATGGCTGATTTGATTGCAGAAGAAGATGCTGCCATCTGGGAAAATGAGCCTGCTATTGTTAAACGGCTGAAGAAACTCCTCATGCTGTCGACAGATGGAACTCTGAATATGCATGCACTGTGGCTCATAAGAAGAGAACTTGGGTTGCCCAATGACTAAAGGTGCTCTATACTACCAAACCATCGGTCAGAGTTTTCTCTAGGTTCCCCCGATACTCTGACATTTGTCACTAGGGATGAAAATTTAGCTGTAGCCGATGTTGAAGAATGGAGAGTGAAGGAATATACAGAAAAATGGTTAGCTGAATCTGAGACAAAATATTCTTTTCCTATAAACTTTCCAACCGGCTTTAAGATTGAGAAAGGTTTTAGGGAAAAGCTTGGTAACTGGCAGAGGCTTCCCTACACCAAGGCTTATGAGAATAATGAATTGCATCCAATCCATAATGTTGAGCAGCTCGAGAAACATATTGTTGGCATTCTTCACGAACTTTTAAGCTTGACAGTGGAAAAGATGATACCACTTGAGAGGTTCTCCCATTTCAGAAGACCTTTTGATATGGAGGTAAACCTGAGGGAACTTATTCTTAAGCACCCTGGCATTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB641939             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATTTTCTACATCTCAACCAAAGGAAGCACACAAACTGTCCTCCTTAGAGAGAGTTACAGTAAGGGATGCTTGGTTGATCCTAACCCTGTCTACAATGTAAGAAGGAAAATGCTAGATCTTATTTTGTCAGGATGCCATGGGATTGATGAAACGGATGGTCCAATTCAGTTAGTTGAGGAGCACAATCAAGAAAGCAGTAATGTGTCATAGAATCACATGTGGCAGACAGATTCCGGATGCCTTGTCGGAAGCTCAAAGTGACATTTATCAAAGAATTAGCTATTTTAATCTCTGACATTGTTTATGGGCTTATGGGAGTACAATGTTGATAATGGTATGAACTTGAGACGTCGGTGGTGGAGCATCATCGGTTGAGGAATGTACTGATGTGCAAGCTAAGAAAGTCAGCTGTCCTGAGGGCCTACTCTGCACCCAGGGAAGAATGGATGCATCACGGTGCTTAGCAGCTAACAAAGGAAGATGCGCTTGAGCAGAATCAGTTGTCAACCTTGGTTCCTGTTCGACAGATCTACTATTATTTTTACGGTACTCCACTGATTTATTTTCACTGAAGAGATAGGTCCAATGAAGATTTAAGGGCAGTCATTGATGCTTTGAACTGGTCTATCATAAATGTTGAAACAGAACTCACGAGTGTTCAACTAGTGTATTGCTCTCGATCCCCCTTCAGAGGGTAACATTTACATATTTATACTAGATTACATGCAAAGGAAAT]


>consensus_7063#0 CGAATGAAACAGTTTTCAACGTTTCTTATCCATCGAGAGACAAGGAAGAAGTGTTGAACC CGTGGCGTCGGCTCCCCGCTCCCCCAACTCGCGCGGTTGCTGGTTGCTGCCGCCATCGCT TCCTCCCATTCTCTTCTCCACGACGGGGTTACCGAGCTCCGGCGAACCCGCCATGGCGGA CTGGCCGACGGCAGAGCCGAGGCGAATCAGCGGCAGACAGGAGAACCTCCCCAATACGCT CTCCTTTTCCAGTTTCCCCAACTCTAGCTAGAAGCCAATCAGAAGCGCCAGCCAGGGGAA AGCGGGGAGTCGTCGATCCCTCTCGTCGCCGTTGCTCTCGTCGGCATCACCTGACATTAT TGTGCATGAGCATTCGACGACCTAACACCCGGTATAGTTTGCTTCCTCCACCTCGAGCAC AAGCTGTTCGATGAAATGCCTACCAAGGTTAAGGTTCTGTCACCTTTTTTTTTGAATTCA TTGAATATAGAAGGGAACAATATTTACAAGTAAGGAGTAATGGGATTTACAGAAAAGACG ATCGGAACTACGGCAACATCTCTGCTAGTCGTTTGGCTCCCGCCAAAGCCCAAGATTTCG ACTCCTGGTTCTGTCACTTTCTTGTTCCAAAACTGATGAGCATCCTGCGTTCCTTTGCTA TTTTGCACAACCTTGTGGAACAATAATAAAAGAAAATAATTAGTCTTCCATATTTGGTTG TAGTTCTATAGATGACAAGTTAAAGTTAGTTCATCTTTTTGGTATATTACACATAAGAAT CCTTCGAATTCGTTTGTTGCAGATTGATAAGTCGACATTGATTCACATATCCATTTTTGC ATGCTGATGGTGTTTTCTGTGCTCTAAGTAAGGTCCGGATCTGAATATAAAACTGAATGG CATCTGTAGTGTTTGGTCAAAGGAATGTGTGTGTCTTTCCCCTGAGGAGGCACATATTGG ATGAGGTGTTTCAGCATGGTCCTTGTAATTGTAGCACACAGAGGAGGTGGAAAAAGCCAA TTGATTCAGCAAGAACTCGTCTGGAGGGCAGAATAAGGGATCATAAACTGGACAAGCTGA TGATTCAACTGAAGAACCTGAGGCTAGCTTTGGATTTGCATGAGTTCATATCTCAGCAGA GGAATGGCTACGCATCTCTCCAACTCCTCTCCAGGTGGAGACATGAAGTCGGGCTAAACA TTGAGATTGGGGCTTTCCTTAAGAAATATCCCCACATCTTCGACATTTATGTGCACCCAA TAAAGAATAACCAATGCTGTAAGGTCACTCCAAAGATGGCTGATTTGATTGCAGAAGAAG ATGCTGCCATCTGGGAAAATGAGCCTGCTATTGTTAAACGGCTGAAGAAACTCCTCATGC TGTCGACAGATGGAACTCTGAATATGCATGCACTGTGGCTCATAAGAAGAGAACTTGGGT TGCCCAATGACTAAAGGTGCTCTATACTACCAAACCATCGGTCAGAGTTTTCTCTAGGTT CCCCCGATACTCTGACATTTGTCACTAGGGATGAAAATTTAGCTGTAGCCGATGTTGAAG AATGGAGAGTGAAGGAATATACAGAAAAATGGTTAGCTGAATCTGAGACAAAATATTCTT TTCCTATAAACTTTCCAACCGGCTTTAAGATTGAGAAAGGTTTTAGGGAAAAGCTTGGTA ACTGGCAGAGGCTTCCCTACACCAAGGCTTATGAGAATAATGAATTGCATCCAATCCATA ATGTTGAGCAGCTCGAGAAACATATTGTTGGCATTCTTCACGAACTTTTAAGCTTGACAG TGGAAAAGATGATACCACTTGAGAGGTTCTCCCATTTCAGAAGACCTTTTGATATGGAGG TAAACCTGAGGGAACTTATTCTTAAGCACCCTGGCATTTTCTACATCTCAACCAAAGGAA GCACACAAACTGTCCTCCTTAGAGAGAGTTACAGTAAGGGATGCTTGGTTGATCCTAACC CTGTCTACAATGTAAGAAGGAAAATGCTAGATCTTATTTTGTCAGGATGCCATGGGATTG ATGAAACGGATGGTCCAATTCAGTTAGTTGAGGAGCACAATCAAGAAAGCAGTAATGTGT CATAGAATCACATGTGGCAGACAGATTCCGGATGCCTTGTCGGAAGCTCAAAGTGACATT TATCAAAGAATTAGCTATTTTAATCTCTGACATTGTTTATGGGCTTATGGGAGTACAATG TTGATAATGGTATGAACTTGAGACGTCGGTGGTGGAGCATCATCGGTTGAGGAATGTACT GATGTGCAAGCTAAGAAAGTCAGCTGTCCTGAGGGCCTACTCTGCACCCAGGGAAGAATG GATGCATCACGGTGCTTAGCAGCTAACAAAGGAAGATGCGCTTGAGCAGAATCAGTTGTC AACCTTGGTTCCTGTTCGACAGATCTACTATTATTTTTACGGTACTCCACTGATTTATTT TCACTGAAGAGATAGGTCCAATGAAGATTTAAGGGCAGTCATTGATGCTTTGAACTGGTC TATCATAAATGTTGAAACAGAACTCACGAGTGTTCAACTAGTGTATTGCTCTCGATCCCC CTTCAGAGGGTAACATTTACATATTTATACTAGATTACATGCAAAGGAAAT



consensusID : consensus_7063#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence
                              [ATTTTTAAAATATCAAGCATTGAAAAGTTCTCCTCTAAATTATTGACAAGTCGACATTGATTCACATAACCATTTTTGCATGCCGATGGTGTTTTCTGTGCTCTAAGGTCTGGATCTGAATATACAACTGAATGGCATCTATATTGTTTGGTCATAGAAATCTGTGTGTCTTTCCCCTGAGAAGGCACATATTGGATGAGGTATACCAGCATGGTCCTTATAATTGTACCATACAGAGGAGGTGGAAAAAGCCAGTTGATTCAGCAAGAACTCGTCTGGAGGGCAGAACAAGGGATCATAAACTGGACAAGCTGATGATTCAGCTGAAGAACCTCAGGCTGGCTTTGGATTTACATGAGTTGATATCTCAGCAGAGGAACAAATATGCATCTCTCCAACTCCTCTCCAGGTGGAGACATGAGGTCGGCTTGAACATTGAGATAGGCGCTTTCCTCAAGAAATATCCCCACATTTTCGACATTTATGTGCACCCAATCAAAAGAAATGAATGCTGTAAGGTCACCCCAAAAATGTCTGAATTGATTGCACAAGAAGA]

[+] EMBL CF306661             [ATTTTTAAAATATCAAGCATTGAAAAGTTCTCCTCTAAATTATTGACAAGTCGACATTGATTCACATAACCATTTTTGCATGCCGATGGTGTTTTCTGTGCTCTAAGGTCTGGATCTGAATATACAACTGAATGGCATCTATATTGTTTGGTCATAGAAATCTGTGTGTCTTTCCCCTGAGAAGGCACATATTGGATGAGGTATACCAGCATGGTCCTTATAATTGTACCATACAGAGGAGGTGGAAAAAGCCAGTTGATTCAGCAAGAACTCGTCTGGAGGGCAGAACAAGGGATCATAAACTGGACAAGCTGATGATTCAGCTGAAGAACCTCAGGCTGGCTTTGGATTTACATGAGTTGATATCTCAGCAGAGGAACAAATATGCATCTCTCCAACTCCTCTCCAGGTGGAGACATGAGGTCGGCTTGAACATTGAGATAGGCGCTTTCCTCAAGAAATATCCCCACATTTTCGACATTTATGTGCACCCAATCAAAAGAAATGAATGCTGTAAGGTCACCCCAAAAATGTCTGAATTGATTGCACAAGAAGA]


>consensus_7063#1 ATTTTTAAAATATCAAGCATTGAAAAGTTCTCCTCTAAATTATTGACAAGTCGACATTGA TTCACATAACCATTTTTGCATGCCGATGGTGTTTTCTGTGCTCTAAGGTCTGGATCTGAA TATACAACTGAATGGCATCTATATTGTTTGGTCATAGAAATCTGTGTGTCTTTCCCCTGA GAAGGCACATATTGGATGAGGTATACCAGCATGGTCCTTATAATTGTACCATACAGAGGA GGTGGAAAAAGCCAGTTGATTCAGCAAGAACTCGTCTGGAGGGCAGAACAAGGGATCATA AACTGGACAAGCTGATGATTCAGCTGAAGAACCTCAGGCTGGCTTTGGATTTACATGAGT TGATATCTCAGCAGAGGAACAAATATGCATCTCTCCAACTCCTCTCCAGGTGGAGACATG AGGTCGGCTTGAACATTGAGATAGGCGCTTTCCTCAAGAAATATCCCCACATTTTCGACA TTTATGTGCACCCAATCAAAAGAAATGAATGCTGTAAGGTCACCCCAAAAATGTCTGAAT TGATTGCACAAGAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7063#0      CGAATGAAACAGTTTTCAACGTTTCTTATCCATCGAGAGACAAGGAAGAAGTGTTGAACC 60
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      CGTGGCGTCGGCTCCCCGCTCCCCCAACTCGCGCGGTTGCTGGTTGCTGCCGCCATCGCT 120
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TCCTCCCATTCTCTTCTCCACGACGGGGTTACCGAGCTCCGGCGAACCCGCCATGGCGGA 180
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      CTGGCCGACGGCAGAGCCGAGGCGAATCAGCGGCAGACAGGAGAACCTCCCCAATACGCT 240
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      CTCCTTTTCCAGTTTCCCCAACTCTAGCTAGAAGCCAATCAGAAGCGCCAGCCAGGGGAA 300
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      AGCGGGGAGTCGTCGATCCCTCTCGTCGCCGTTGCTCTCGTCGGCATCACCTGACATTAT 360
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TGTGCATGAGCATTCGACGACCTAACACCCGGTATAGTTTGCTTCCTCCACCTCGAGCAC 420
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      AAGCTGTTCGATGAAATGCCTACCAAGGTTAAGGTTCTGTCACCTTTTTTTTTGAATTCA 480
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TTGAATATAGAAGGGAACAATATTTACAAGTAAGGAGTAATGGGATTTACAGAAAAGACG 540
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      ATCGGAACTACGGCAACATCTCTGCTAGTCGTTTGGCTCCCGCCAAAGCCCAAGATTTCG 600
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      ACTCCTGGTTCTGTCACTTTCTTGTTCCAAAACTGATGAGCATCCTGCGTTCCTTTGCTA 660
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TTTTGCACAACCTTGTGGAACAATAATAAAAGAAAATAATTAGTCTTCCATATTTGGTTG 720
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TAGTTCTATAGATGACAAGTTAAAGTTAGTTCATCTTTTTGGTATATTACACATAAGAAT 780
consensus_7063#1      ----------------------------------ATTTTTAAAATATCAAGCATTGAAA- 25
                                                         *****   **** *  ***   ** 

consensus_7063#0      CCTTCGAATTCGTTTGTTGCAGATTGATAAGTCGACATTGATTCACATATCCATTTTTGC 840
consensus_7063#1      ------AGTTCTCCTCTAAATTATTGACAAGTCGACATTGATTCACATAACCATTTTTGC 79
                            * ***   * *     ***** ********************* **********

consensus_7063#0      ATGCTGATGGTGTTTTCTGTGCTCTAAGTAAGGTCCGGATCTGAATATAAAACTGAATGG 900
consensus_7063#1      ATGCCGATGGTGTTTTCTGTGCTCTAAG----GTCTGGATCTGAATATACAACTGAATGG 135
                      **** ***********************    *** ************* **********

consensus_7063#0      CATCTGTAGTGTTTGGTCAAAGGAATGTGTGTGTCTTTCCCCTGAGGAGGCACATATTGG 960
consensus_7063#1      CATCTATATTGTTTGGTCATAGAAATCTGTGTGTCTTTCCCCTGAGAAGGCACATATTGG 195
                      ***** ** ********** ** *** ******************* *************

consensus_7063#0      ATGAGGTGTTTCAGCATGGTCCTTGTAATTGTAGCACACAGAGGAGGTGGAAAAAGCCAA 1020
consensus_7063#1      ATGAGGTATACCAGCATGGTCCTTATAATTGTACCATACAGAGGAGGTGGAAAAAGCCAG 255
                      ******* *  ************* ******** ** ********************** 

consensus_7063#0      TTGATTCAGCAAGAACTCGTCTGGAGGGCAGAATAAGGGATCATAAACTGGACAAGCTGA 1080
consensus_7063#1      TTGATTCAGCAAGAACTCGTCTGGAGGGCAGAACAAGGGATCATAAACTGGACAAGCTGA 315
                      ********************************* **************************

consensus_7063#0      TGATTCAACTGAAGAACCTGAGGCTAGCTTTGGATTTGCATGAGTTCATATCTCAGCAGA 1140
consensus_7063#1      TGATTCAGCTGAAGAACCTCAGGCTGGCTTTGGATTTACATGAGTTGATATCTCAGCAGA 375
                      ******* *********** ***** *********** ******** *************

consensus_7063#0      GGAATGGCTACGCATCTCTCCAACTCCTCTCCAGGTGGAGACATGAAGTCGGGCTAAACA 1200
consensus_7063#1      GGAACAAATATGCATCTCTCCAACTCCTCTCCAGGTGGAGACATGAGGTCGGCTTGAACA 435
                      ****    ** *********************************** *****  * ****

consensus_7063#0      TTGAGATTGGGGCTTTCCTTAAGAAATATCCCCACATCTTCGACATTTATGTGCACCCAA 1260
consensus_7063#1      TTGAGATAGGCGCTTTCCTCAAGAAATATCCCCACATTTTCGACATTTATGTGCACCCAA 495
                      ******* ** ******** ***************** **********************

consensus_7063#0      TAAAGAATAACCAATGCTGTAAGGTCACTCCAAAGATGGCTGATTTGATTGCAGAAGAAG 1320
consensus_7063#1      TCAAAAGAAATGAATGCTGTAAGGTCACCCCAAAAATGTCTGAATTGATTGCACAAGAAG 555
                      * ** *  **  **************** ***** *** **** ********* ******

consensus_7063#0      ATGCTGCCATCTGGGAAAATGAGCCTGCTATTGTTAAACGGCTGAAGAAACTCCTCATGC 1380
consensus_7063#1      A----------------------------------------------------------- 556
                      *                                                           

consensus_7063#0      TGTCGACAGATGGAACTCTGAATATGCATGCACTGTGGCTCATAAGAAGAGAACTTGGGT 1440
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TGCCCAATGACTAAAGGTGCTCTATACTACCAAACCATCGGTCAGAGTTTTCTCTAGGTT 1500
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      CCCCCGATACTCTGACATTTGTCACTAGGGATGAAAATTTAGCTGTAGCCGATGTTGAAG 1560
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      AATGGAGAGTGAAGGAATATACAGAAAAATGGTTAGCTGAATCTGAGACAAAATATTCTT 1620
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TTCCTATAAACTTTCCAACCGGCTTTAAGATTGAGAAAGGTTTTAGGGAAAAGCTTGGTA 1680
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      ACTGGCAGAGGCTTCCCTACACCAAGGCTTATGAGAATAATGAATTGCATCCAATCCATA 1740
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      ATGTTGAGCAGCTCGAGAAACATATTGTTGGCATTCTTCACGAACTTTTAAGCTTGACAG 1800
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TGGAAAAGATGATACCACTTGAGAGGTTCTCCCATTTCAGAAGACCTTTTGATATGGAGG 1860
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TAAACCTGAGGGAACTTATTCTTAAGCACCCTGGCATTTTCTACATCTCAACCAAAGGAA 1920
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      GCACACAAACTGTCCTCCTTAGAGAGAGTTACAGTAAGGGATGCTTGGTTGATCCTAACC 1980
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      CTGTCTACAATGTAAGAAGGAAAATGCTAGATCTTATTTTGTCAGGATGCCATGGGATTG 2040
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      ATGAAACGGATGGTCCAATTCAGTTAGTTGAGGAGCACAATCAAGAAAGCAGTAATGTGT 2100
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      CATAGAATCACATGTGGCAGACAGATTCCGGATGCCTTGTCGGAAGCTCAAAGTGACATT 2160
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TATCAAAGAATTAGCTATTTTAATCTCTGACATTGTTTATGGGCTTATGGGAGTACAATG 2220
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TTGATAATGGTATGAACTTGAGACGTCGGTGGTGGAGCATCATCGGTTGAGGAATGTACT 2280
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      GATGTGCAAGCTAAGAAAGTCAGCTGTCCTGAGGGCCTACTCTGCACCCAGGGAAGAATG 2340
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      GATGCATCACGGTGCTTAGCAGCTAACAAAGGAAGATGCGCTTGAGCAGAATCAGTTGTC 2400
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      AACCTTGGTTCCTGTTCGACAGATCTACTATTATTTTTACGGTACTCCACTGATTTATTT 2460
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TCACTGAAGAGATAGGTCCAATGAAGATTTAAGGGCAGTCATTGATGCTTTGAACTGGTC 2520
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      TATCATAAATGTTGAAACAGAACTCACGAGTGTTCAACTAGTGTATTGCTCTCGATCCCC 2580
consensus_7063#1      ------------------------------------------------------------
                                                                                  

consensus_7063#0      CTTCAGAGGGTAACATTTACATATTTATACTAGATTACATGCAAAGGAAAT 2631
consensus_7063#1      ---------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)