These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2309 fasta sequence [TGGCCCCCCCTCCGCGGCCTCCGCTCACCTCTCCTCCTCCTCGCGATTTCCACCCGCACCGCCGCCTGCGCCGATCTCTCCATTCCCGCGACCACCGCCGCCCGCCGCCCGCCGCATCTGGCCACCACCTATGCCCCCCGTCAGGTCCGCCCCCGGGAGGCGGGCGCCGGAATTCCGGCGCTCGTCGGCGGCGGCTGCCGGAGTGGATCTGGTGGCTCGTCGGGATCTTCCTCGTCCTCGGCCTCATGCTCTTCGTCCTGCACCACAACCAGAGGGAGCATTTCCGCCCGCCCGTAGTCGATAAGGGTTCAGAATTTGAGGAAACCCATCATGAGAAAGTAAATTTCACAGAAGAGCTTTTAAGCAGTACATCATTTGCACGCCAATTGACAGATCAAATGACTCTAGCAAAGGCTTATGTTGTCCTTGCAAAAGAGCATGGCAACCTTCAGCTTGCATGGGAGCTTAGTTCACAGATAAGGAATTGTCAAAGATTGCTATCTGAAGAAGCTGTTAGTGGGAAGGCCATCACTAAAGAAGAAGCCCATCCAATAATAACTCGGCTTGCACGGTTAATATACAAAGCACAGGACTCTCATTATGATATCAGCACAACAATTGTAACACTGAAGAGCCTTGTCAATGCACTTGAGGAGCGTGCAAAGGCAGCAGTTGTTCAGACTGCTGAGTTTGGTCAGTTAGCTGCAGAGTCCGTCCCCAAGAATTTGCACTGTTTAACTGTTAAACTGACGGTAGAGTGGCTTCAGAACCCAAAACATAGGGGTCGCTCAGAAGAACATCGGAACTCCACACGATTGGTAGACAATAATCTGTACCATTTTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAAATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGGCTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCATAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGATGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAGTTCCATAATCCCAAGTTTGTTTCTCTGTTGAACCATTTGCGGTTCTACATTCCTCAAATACTACCTAATTTGGAGAAGGTGGTTTTTCTCGATGATGATGTTGTGGTACAGAAGGACTTGACACAGCTATTTTCGATAGAGTTGCACGGTAATGTTATTGGAGCAGTGGAGACTTGTTTAGAGTCATTTCATCGGTATCACAAGTATCTTAATTTCTCCCACCCAATTATCAGCTCCAAAATTGATCCGCATACTTGTGGGTGGGCTTTTGGGATGAACATCTTTGACTTAATAGCCTGGAGGAAGGCAAATGCCACAGCACTTTATCATTATTGGCAAGAGCAAAATGCTGATCTATTGCTCTGGAGGACAGGGACACTTCCTGCAGGCCTTTTGACGTTCTATGGCCTGATGGAACCCCTAGATCGCAGATGGCATGTCTTGGGGCTAGGATATGATGTTGACATAGATGATCGTTTGATTGAGAGTGCCGCTGTCGTGCACTACAATGGGAATATGAAACCATGGCTGAAGTTAGCCATTCGTCGGTACAAGTATATATGGGAGCGGTATGTCAATTTCACACACCCATATGTTAGAGAGTGTTTGTTGCATTAGAAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAGCTAGGCGCTTCGGTTTCTTACATGGAGTTGCTTTTTGGCACCTTGTTTAAGAAATCCTTCGGAGAGGTAGATTATATACTCAAGAGACAGCATCAAAGAAGCCAACTGTTAAAATTTCTTTTTGGGTGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTTTTACATACAATTTGGACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTGTAAAAGAGATATAGGTGTTGGATCGATGGGGTCAATTTTTGAGATGTAGGAAATGCCAATTGCCGATTCAGCTGTTCAGAGTTGCTGGTGTTACATTCTTTCCAGAACATTGTGTTTTATACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAACAGCTCTGTATTCTTCATACAGTATGAACTCAGCTCATTTGATAAAAGGAAATCAAAATCATTTTGATGTGCTAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATCG] [+] EMBL AK100228 [TGGCCCCCCCTCCGCGGCCTCCGCTCACCTCTCCTCCTCCTCGCGATTTCCACCCGCACCGCCGCCTGCGCCGATCTCTCCATTCCCGCGACCACCGCCGCCCGCCGCCCGCCGCATCTGGCCACCACCTATGCCCCCCGTCAGGTCCGCCCCCGGGAGGCGGGCGCCGGAATTCCGGCGCTCGTCGGCGGCGGCTGCCGGAGTGGATCTGGTGGCTCGTCGGGATCTTCCTCGTCCTCGGCCTCATGCTCTTCGTCCTGCACCACAACCAGAGGGAGCATTTCCGCCCGCCCGTAGTCGATAAGGGTTCAGAATTTGAGGAAACCCATCATGAGAAAGTAAATTTCACAGAAGAGCTTTTAAGCAGTACATCATTTGCACGCCAATTGACAGATCAAATGACTCTAGCAAAGGCTTATGTTGTCCTTGCAAAAGAGCATGGCAACCTTCAGCTTGCATGGGAGCTTAGTTCACAGATAAGGAATTGTCAAAGATTGCTATCTGAAGAAGCTGTTAGTGGGAAGGCCATCACTAAAGAAGAAGCCCATCCAATAATAACTCGGCTTGCACGGTTAATATACAAAGCACAGGACTCTCATTATGATATCAGCACAACAATTGTAACACTGAAGAGCCTTGTCAATGCACTTGAGGAGCGTGCAAAGGCAGCAGTTGTTCAGACTGCTGAGTTTGGTCAGTTAGCTGCAGAGTCCGTCCCCAAGAATTTGCACTGTTTAACTGTTAAACTGACGGTAGAGTGGCTTCAGAACCCAAAACATAGGGGTCGCTCAGAAGAACATCGGAACTCCACACGATTGGTAGACAATAATCTGTACCATTTTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAAATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGGCTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCATAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGATGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAGTTCCATAATCCCAAGTTTGTTTCTCTGTTGAACCATTTGCGGTTCTACATTCCTCAAATACTACCTAATTTGGAGAAGGTGGTTTTTCTCGATGATGATGTTGTGGTACAGAAGGACTTGACACAGCTATTTTCGATAGAGTTGCACGGTAATGTTATTGGAGCAGTGGAGACTTGTTTAGAGTCATTTCATCGGTATCACAAGTATCTTAATTTCTCCCACCCAATTATCAGCTCCAAAATTGATCCGCATACTTGTGGGTGGGCTTTTGGGATGAACATCTTTGACTTAATAGCCTGGAGGAAGGCAAATGCCACAGCACTTTATCATTATTGGCAAGAGCAAAATGCTGATCTATTGCTCTGGAGGACAGGGACACTTCCTGCAGGCCTTTTGACGTTCTATGGCCTGATGGAACCCCTAGATCGCAGATGGCATGTCTTGGGGCTAGGATATGATGTTGACATAGATGATCGTTTGATTGAGAGTGCCGCTGTCGTGCACTACAATGGGAATATGAAACCATGGCTGAAGTTAGCCATTCGTCGGTACAAGTATATATGGGAGCGGTATGTCAATTTCACACACCCATATGTTAGAGAGTGTTTGTTGCATTAGAAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAGCTAGGCGCTTCGGTTTCTTACATGGAGTTGCTTTTTGGCACCTTGTTTAAGAAATCCTTCGGAGAGGTAGATTATATACTCAAGAGACAGCATCAAAGAAGCCAACTGTTAAAATTTCTTTTTGGGTGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTTTTACATACAATTTGGACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTGTAAAAGAGATATAGGTGTTGGATCGATGGGGTCAATTTTTGAGATGTAGGAAATGCCAATTGCCGATTCAGCTGTTCAGAGTTGCTGGTGTTACATTCTTTCCAGAACATTGTGTTTTATACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAACAGCTCTGTATTCTTCATACAGTATGAACTCAGCTCATTTGATAAAAGGAAATCAAAATCATTT ] [+] EMBL OSS0093A [ cgagCACAACCAGAGGGAGCATTTCCGCCCGCCCGTAGTCGATAAGGGTTCAGAATTTGAGGAAACCCATCATGAGAAAGTAAATTTCACAGAAGAGCTTTTAAGCAGTACATCATTTGCACGCCAATTGACAGATCAAATGACTCTAGCAAAGGCTTATGTTGTCCTTGCAAAAGAGCATGGCAACCTTCAGCTTGCATGGGAGCTTAGTTCACAGATAAGGAATTGTCAAAGATTGCTATCTGAAGAAGCTGTTAGTGGGAAGGCCATCACTAAAGAAGAAGCCCATCCAATAATAACTCGGCTTGCACGGTTAATATACAAAGCACAGGGCTCTCATTATGGTATCAGCACAACAt ] [-] EMBL CF307754 [ TGCATTAGAAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAGCTAGGCGCTTCGGTTTCTTACATGGAGTTGCTTTTTGGCACCTTGTTTAAGAAATCCTTCGGAGAGGTAGATTATATACTCAAGAGACAGCATCAAAGAAGCCAACTGTTAAAATTTCTTTTTGGGTGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTTTTACATACAATTTGGACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTGTAAAAGAGATATAGGTGTTGGATCGATGGGGTCAATTTTTGAGATGTAGGAAATGCCAATTGCCGATTCAGCTGTTCAANGATGATGGTGTTACATTCTTTCCAGAACATTGTGTTTTATACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAACAGCTCTGTATTCTTCATACAGTATGAACTCAGCTCATTTGATAAAAGGAAATCGAAATCATTTTGATGTGCTAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATCG] consensusID : consensus_7065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [CATGGATGAGGAGTAGAAAAGACAATAATCTGTACCATTTTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAAATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGGCTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCATAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGATGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAG] [+] EMBL CF307753 [CATGGATGAGGAGTAGAAAAGACAATAATCTGTACCATTTTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAAATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGGCTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCATAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGATGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7065#0 TGGCCCCCCCTCCGCGGCCTCCGCTCACCTCTCCTCCTCCTCGCGATTTCCACCCGCACC 60 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GCCGCCTGCGCCGATCTCTCCATTCCCGCGACCACCGCCGCCCGCCGCCCGCCGCATCTG 120 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GCCACCACCTATGCCCCCCGTCAGGTCCGCCCCCGGGAGGCGGGCGCCGGAATTCCGGCG 180 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 CTCGTCGGCGGCGGCTGCCGGAGTGGATCTGGTGGCTCGTCGGGATCTTCCTCGTCCTCG 240 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GCCTCATGCTCTTCGTCCTGCACCACAACCAGAGGGAGCATTTCCGCCCGCCCGTAGTCG 300 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 ATAAGGGTTCAGAATTTGAGGAAACCCATCATGAGAAAGTAAATTTCACAGAAGAGCTTT 360 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 TAAGCAGTACATCATTTGCACGCCAATTGACAGATCAAATGACTCTAGCAAAGGCTTATG 420 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 TTGTCCTTGCAAAAGAGCATGGCAACCTTCAGCTTGCATGGGAGCTTAGTTCACAGATAA 480 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GGAATTGTCAAAGATTGCTATCTGAAGAAGCTGTTAGTGGGAAGGCCATCACTAAAGAAG 540 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 AAGCCCATCCAATAATAACTCGGCTTGCACGGTTAATATACAAAGCACAGGACTCTCATT 600 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 ATGATATCAGCACAACAATTGTAACACTGAAGAGCCTTGTCAATGCACTTGAGGAGCGTG 660 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 CAAAGGCAGCAGTTGTTCAGACTGCTGAGTTTGGTCAGTTAGCTGCAGAGTCCGTCCCCA 720 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 AGAATTTGCACTGTTTAACTGTTAAACTGACGGTAGAGTGGCTTCAGAACCCAAAACATA 780 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GGGGTCGCTCAGAAGAACATCGGAACTCCACACGATTGGTAGACAATAATCTGTACCATT 840 consensus_7065#1 -----------------CATGGATG----AGGAGTAGAAAAGACAATAATCTGTACCATT 39 *** * * * ******************** consensus_7065#0 TTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAA 900 consensus_7065#1 TTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAA 99 ************************************************************ consensus_7065#0 ATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGG 960 consensus_7065#1 ATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGG 159 ************************************************************ consensus_7065#0 CTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCA 1020 consensus_7065#1 CTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCA 219 ************************************************************ consensus_7065#0 TAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGA 1080 consensus_7065#1 TAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGA 279 ************************************************************ consensus_7065#0 TGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAGTTCC 1140 consensus_7065#1 TGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAG---- 335 ******************************************************** consensus_7065#0 ATAATCCCAAGTTTGTTTCTCTGTTGAACCATTTGCGGTTCTACATTCCTCAAATACTAC 1200 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 CTAATTTGGAGAAGGTGGTTTTTCTCGATGATGATGTTGTGGTACAGAAGGACTTGACAC 1260 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 AGCTATTTTCGATAGAGTTGCACGGTAATGTTATTGGAGCAGTGGAGACTTGTTTAGAGT 1320 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 CATTTCATCGGTATCACAAGTATCTTAATTTCTCCCACCCAATTATCAGCTCCAAAATTG 1380 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 ATCCGCATACTTGTGGGTGGGCTTTTGGGATGAACATCTTTGACTTAATAGCCTGGAGGA 1440 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 AGGCAAATGCCACAGCACTTTATCATTATTGGCAAGAGCAAAATGCTGATCTATTGCTCT 1500 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GGAGGACAGGGACACTTCCTGCAGGCCTTTTGACGTTCTATGGCCTGATGGAACCCCTAG 1560 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 ATCGCAGATGGCATGTCTTGGGGCTAGGATATGATGTTGACATAGATGATCGTTTGATTG 1620 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 AGAGTGCCGCTGTCGTGCACTACAATGGGAATATGAAACCATGGCTGAAGTTAGCCATTC 1680 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GTCGGTACAAGTATATATGGGAGCGGTATGTCAATTTCACACACCCATATGTTAGAGAGT 1740 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GTTTGTTGCATTAGAAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAG 1800 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 CTAGGCGCTTCGGTTTCTTACATGGAGTTGCTTTTTGGCACCTTGTTTAAGAAATCCTTC 1860 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 GGAGAGGTAGATTATATACTCAAGAGACAGCATCAAAGAAGCCAACTGTTAAAATTTCTT 1920 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 TTTGGGTGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTT 1980 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 TTACATACAATTTGGACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTG 2040 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 TAAAAGAGATATAGGTGTTGGATCGATGGGGTCAATTTTTGAGATGTAGGAAATGCCAAT 2100 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 TGCCGATTCAGCTGTTCAGAGTTGCTGGTGTTACATTCTTTCCAGAACATTGTGTTTTAT 2160 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 ACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAACAGCTCTGTATTCTTCATACAGT 2220 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 ATGAACTCAGCTCATTTGATAAAAGGAAATCAAAATCATTTTGATGTGCTAAAAAAAAAA 2280 consensus_7065#1 ------------------------------------------------------------ consensus_7065#0 AAAAAAAAAACACTGTCATGCCGTTATCG 2309 consensus_7065#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||