cluster # 707

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Oryza sativa
cluster # 707 cluster # 707 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_707#0 length = 287 sequences # 1

consensus_707#1 length = 184 sequences # 1

consensusID : consensus_707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGGCAAATCCCACTTTTTTATAAAGCATTCTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGGGCCTTTAAACCCAACCCAAGTTAACTTTACCCCCCCAAATTCTTGACAAACAAAGGCTTGGGATAACCAAGCCCATTGGGAGCTCCCCCAAACTGGGTGATTACTGACCCCCCCGGGGGGGGACCCCCAGGGGGGGGGGGGAC]

[+] EMBL CF276646             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGGCAAATCCCACTTTTTTATAAAGCATTCTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGGGCCTTTAAACCCAACCCAAGTTAACTTTACCCCCCCAAATTCTTGACAAACAAAGGCTTGGGATAACCAAGCCCATTGGGAGCTCCCCCAAACTGGGTGATTACTGACCCCCCCGGGGGGGGACCCCCAGGGGGGGGGGGGAC]




>consensus_707#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGG
GGCAAATCCCACTTTTTTATAAAGCATTCTGGTGTCCCACAGGAAACTGTTTCATAAAAC
TAACATTTTATACGGGCTCGAGGGGCCTTTAAACCCAACCCAAGTTAACTTTACCCCCCC
AAATTCTTGACAAACAAAGGCTTGGGATAACCAAGCCCATTGGGAGCTCCCCCAAACTGG
GTGATTACTGACCCCCCCGGGGGGGGACCCCCAGGGGGGGGGGGGAC

consensusID : consensus_707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCAAAAAACATACTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGGGCCTTTAAACCAAACCCAAGTAAACTTCACCCCCCCAAATACTTTTTTTACTCCTTCAACCCAT]

[+] EMBL CF312275             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCAAAAAACATACTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGGGCCTTTAAACCAAACCCAAGTAAACTTCACCCCCCCAAATACTTTTTTTACTCCTTCAACCCAT]




>consensus_707#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCAAAAAA
CATACTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGG
GCCTTTAAACCAAACCCAAGTAAACTTCACCCCCCCAAATACTTTTTTTACTCCTTCAAC
CCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_707#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGG 60
consensus_707#1      -------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA-- 51
                            ***************************************************  

consensus_707#0      GGCAAATCCCACTTTTTTATAAAGCATTCTGGTGTCCCACAGGAAACTGTTTCATAAAAC 120
consensus_707#1      ---------------TTCAAAAAACATACTGGTGTCCCACAGGAAACTGTTTCATAAAAC 96
                                    ** * *** *** ********************************

consensus_707#0      TAACATTTTATACGGGCTCGAGGGGCCTTTAAACCCAACCCAAGTTAACTTTACCCCCCC 180
consensus_707#1      TAACATTTTATACGGGCTCGAGGGGCCTTTAAACCAAACCCAAGTAAACTTCACCCCCCC 156
                     *********************************** ********* ***** ********

consensus_707#0      AAATTCTTGACAAACAAAGGCTTGGGATAACCAAGCCCATTGGGAGCTCCCCCAAACTGG 240
consensus_707#1      AAATACTTTTTTTACTC---CTTCAACCCAT----------------------------- 184
                     **** ***     **     ***      *                              

consensus_707#0      GTGATTACTGACCCCCCCGGGGGGGGACCCCCAGGGGGGGGGGGGAC 287
consensus_707#1      -----------------------------------------------