These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 247 fasta sequence [GGCTCGAGGAGGCCATCGCCGACGAGCTCCTCCGCTNGCTGCCNCCNCCGCCGCCGGCCTAGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTNTAAAAAAAAAAA] [+] EMBL AU184851 [GGCTCGAGGAGGCCATCGCCGACGAGCTCCTCCGCTNGCTGCCNCCNCCGCCGCCGGCCTAGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTNTAAAAAAAAAA ] [+] EMBL BI812621 [ CGGCCTAGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGAC TTTGTAAAAAAA ] [+] EMBL AU071129 [ GTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTCTAAAAAAAAAAA] consensusID : consensus_7070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [CCGGCCGTAGACCGGTCAGTCGTCGGCAGTAGTTAAGTCCGTGCGTTGAGGGTTAAGTTAGGTTAAGTTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACAAAAAAAAA] [+] EMBL BI802489 [CCGGCCGTAGACCGGTCAGTCGTCGGCAGTAGTTAAGTCCGTGCGTTGAGGGTTAAGTTAGGTTAAGTTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7070#0 GGCTCGAGGAGGCCATCGCCGACGAGCTCCTCCGCTNGCTGCCNCCNCCGCCGCCGGCCT 60 consensus_7070#1 -------------------------------CCGGCCGTAGACCGGTCAGTCGTCGGC-- 27 *** * * * * * ** **** consensus_7070#0 AGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAAT 120 consensus_7070#1 -AGTAGTTAAGTCCGTGCGTTGAG---GGTTAAGTTAGGTTA---AGTTACCGCGGTAAT 80 ** * ** * ** * * ** ** * *** * ************* consensus_7070#0 CCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATG 180 consensus_7070#1 CCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATG 140 ************************************************************ consensus_7070#0 TATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTNTAAAA 240 consensus_7070#1 TATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACAAAAAAAAA------------ 188 **************************************** * consensus_7070#0 AAAAAAA 247 consensus_7070#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||