These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 966 fasta sequence [TGTCGGCGATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGGAGGTGTCCGAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCGGGAGCGGTGGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCGTGAACTCCATCGGCCACGAGTACCGCCACCTCCGGTTCCTCGTCATCCGCGGCAAGACGGTGGCCATGTACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTAC-TTCTTAAGTCTGTTNGGTGTGGTT-GGGGCGAATCCTGATACTGTATTTGCAGTGGTTCTCAGCTCTGATAAGCATAAGCGATATGAGTGGGATATGCTGACTGCCGATTTGGAATTGGTAGAAACAATTGATGGATACTATGACGTGGTTTATGGAACCTATGAACCTAGATATTTA] [+] EMBL CB627077 [TGTCGGCGATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGGAGGTGTCCGAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCGGGAGCGGTGGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCGTGAACTCCATCGGCCACGAGTACCGCCACCTCCGGTTCCTCGTCATCCGCGGCAAGACGGTGGCCATGTACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTACTTTCTT AGTCTGTTNGGTGTGGTTGGGGGCGAATCCTGATACTGTATTTGCAGTGGTTCTCAGC ] [+] EMBL CB628541 [TGTCGGCGATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGGAGGTGTCCGAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCGGGAGCGGTGGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCGTGAACTCCATCGGCCACGAGTACCGCCACCTCCGGTTCCTCGTCATCCGCGGCAAGACGGTGGCCATGTACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTAC TTCTTAAGTCTGTTGGGTGTGGTT GGGGCGAATCCTGATAC ] [+] EMBL CB631405 [ CCGACAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTAC TTCTTAAGTCTGTT GGTGTGGTT GGGGCGAATCCTGATACTGTATTTGCAGTGGTTCTCAGCTCTGATAAGCATAAGCGATATGAGTGGGATATGCTGACTGCCGATTTGGAATTGGTAGAAACAATTGATGGATACTATGACGTGGTTTATGGAACCTATGAACCTAGATATTTA] consensusID : consensus_7071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [ATCGTTTCTGCATTTGGGGCTGTTCTGGGTTGCAGGTTTTCTTTGGTTCTGCTGGTATTGCTTTATAACCCCGCTTATATATTGTCTGCTTACCAATGATTCTGAAATCCAACCAGTAGAAAATGGGAGTTTTAGAGTAAACTGCTAAGCTGTGTGTGCTTTCTGTATTTGTTCAGTTACTGACCGACGACTGACACTGTCTGCAATTTAAGGATGAAGAAGGTTGCTGGCAATTTTAGGACCGATGCTTGGGCTGGATGCAGTGCATGTGCCTTGTCAGCGTTTGGGTTGTTTTGAATTTTGAGTTGTAGTTTTGATAATATGAACCTTTTTTAAGAAACGGTTATGTTGATCTTGCTAGAATATATACGTAAAATGATTTATGGCTGTTGTCCCTACATAGCCTCAAGGTAGCAAGACAATTGGGTAGATGTGTAGATCTACATTTGACATAACATCACAAAGTGATTCCTTATTTGCAGATTTTTTTTCTCTTGAGATTTTTTGGACATTACATGCATATGGAATCTTATTACCTCTTCTTGTTTTATCTTAGCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTAT] [+] EMBL CB635523 [ATCGTTTCTGCATTTGGGGCTGTTCTGGGTTGCAGGTTTTCTTTGGTTCTGCTGGTATTGCTTTATAACCCCGCTTATATATTGTCTGCTTACCAATGATTCTGAAATCCAACCAGTAGAAAATGGGAGTTTTAGAGTAAACTGCTAAGCTGTGTGTGCTTTCTGTATTTGTTCAGTTACTGACCGACGACTGACACTGTCTGCAATTTAAGGATGAAGAAGGTTGCTGGCAATTTTAGGACCGATGCTTGGGCTGGATGCAGTGCATGTGCCTTGTCAGCGTTTGGGTTGTTTTGAATTTTGAGTTGTAGTTTTGATAATATGAACCTTTTTTAAGAAACGGTTATGTTGATCTTGCTAGAATATATACGTAAAATGATTTATGGCTGTTGTCCCTACATAGCCTCAAGGTAGCAAGACAATTGGGTAGATGTGTAGATCTACATTTGACATAACATCACAAAGTGATTCCTTATTTGCAGATTTTTTTTCTCTTGAGATTTTTTGGACATTACATGCATATGGAATCTTATTACCTCTTCTTGTTTTATCTTAGCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7071#0 TGTCGGCGATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGG 60 consensus_7071#1 ------------------------------------------------------------ consensus_7071#0 AGGTGTCCGAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCG 120 consensus_7071#1 ------------------------------------------------------------ consensus_7071#0 GGAGCGGTGGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCG 180 consensus_7071#1 ------------------------------------------------ATCGTTTCTGCA 12 * * ** ** consensus_7071#0 TGAACTCCATCGGCCACGAGTACC--GCCACCTCCGGTTCCTCGTCATCCGCGGCAAGAC 238 consensus_7071#1 T---TTGGGGCTGTTCTGGGTTGCAGGTTTTCTTTGGTTCTGCTGGTATTGCTTTATAAC 69 * * * * * ** * * ** ***** * ** * ** consensus_7071#0 GGTGGCCATGTACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAA-GG 297 consensus_7071#1 CCCGCTTATATAT---TGTCTGCTTACCAATGATTCTGAAATCCAACCAGTAGAAAATGG 126 * ** ** * * * *** * * * ********* * *** ** consensus_7071#0 GTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTT-----GGTCGCCGGATTACTAGCCA 352 consensus_7071#1 GAGTTTTAGAGTAAACTGCTAAGCTGTGTGTGCTTTCTGTATTTGTTCAGTTACTGACC- 185 * *** ** * *** ** * ** * **** * * ***** ** consensus_7071#0 TGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCA--AACAAAGAAAGGAGAG 410 consensus_7071#1 -GACGACTGACACTGTCTGCAATTTAAGGATGAAGAAGGTTGCTGGCAATTTTAGGACCG 244 * ** * *** *** * ** * * *** **** * consensus_7071#0 ATTGCATGTGGGGACCCCGGTGAA---GCTAGGAAATGGGTTGAAGCATTTGAGCAGGCA 467 consensus_7071#1 AT-GCTTGGGCTGGATGCAGTGCATGTGCCTTGTCAGCGTTTGGGTTGTTTTGAATTTTG 303 ** ** ** * * * *** * ** * * * *** *** consensus_7071#0 AAACAGCAGGCTGAT--TATGACCTGATGACGAGAGG-GGTTAGTTGGAATAGATCCCAG 524 consensus_7071#1 AGTTGTAGTTTTGATAATATGAACCTTTTTTAAGAAACGGTTATGTTGATCT--TGCTAG 361 * **** ***** * * *** ***** * ** * * ** consensus_7071#0 AATGAAAACG-AGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGG 583 consensus_7071#1 AATATATACGTAAAATGATTT--ATGGCTGTTGTCCCTACATAGCCTCAAGGTAGCAAGA 419 *** * *** * * ** * **** * * ** ** * **** consensus_7071#0 CTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAA 643 consensus_7071#1 CAATTGGGTAGATGTGTAGATCTACATTTGAC---ATAACATCACAAAGTGAT-TCCTTA 475 * ** * *** ** * * * * ** ** * * * * * consensus_7071#0 TCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGA 703 consensus_7071#1 TTTGCAGATTTTT---TTTCTCTTGAGATTTTTTGGACATTACA-TGCATATGGAATCTT 531 * * ** * * * * * * ****** * ** * *** * ** consensus_7071#0 AGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGC 763 consensus_7071#1 ATTAC-CTCTTCTTGTTTTATCTTAGCAACCTAT--CCGAAAGGGTGTTGTAAGT----C 584 * ** * * * * * * * ** ** ** * *** * * * consensus_7071#0 AAACACAAAGGGTGGAAAAGGGGTACTTCTTAAGTCTGTTNGGTGTGGTTGGGGCGAATC 823 consensus_7071#1 ACACTCTTATGGTGGAGGAGC--TTGGTCGCCGGATTACTAGCCATGG--GGAACTGTAT 640 * ** * * ****** ** * ** * * * * *** ** * consensus_7071#0 CTGATACTGTATTTGCAGTGGTTCTCAGCTCTGATAAGCATAAGCGATAT-GAGTGGGAT 882 consensus_7071#1 GTCTTGCGGT-TTTACAATCGGT--TGGATCAAACAAAGAAAGGAGAGATTGCATGTGGG 697 * * * ** *** ** * * * * ** * ** * * * ** ** * ** * consensus_7071#0 ATGCTGACTGCCGATTTGGAATTGGTAGAAACAATTGA-TGGATACTATGACGTGGTTTA 941 consensus_7071#1 GACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCA-GGCTGA 756 * ** * * * *** *** *** ** **** * * * * ** * * consensus_7071#0 TGGAACCTATGAACCTAGATATTTA 966 consensus_7071#1 TTAT--------------------- 760 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||