cluster # 708

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Oryza sativa
cluster # 708 cluster # 708 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_708#0 length = 286 sequences # 1

consensus_708#1 length = 251 sequences # 1

consensusID : consensus_708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGGGGACCCCATTTTAAATGCCTTTTTTAAAATCAAAGGGGAACCCCCCAATCCAAAAAAAATTCCCTCCAAATTCCCCCTCAAATTATACAAATCCCCCGGGGGCCCCACAGGCGTTCAATTTTCCCGGCCGGGGGGTTATTTCAAAAAGGTTTTTGGGCCCGGAATTTTTTTTTGGGTGGCCCATCGATCGATGTTTTTTTTTAAATCTTCCCCT]

[+] EMBL CF301398             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGGGGACCCCATTTTAAATGCCTTTTTTAAAATCAAAGGGGAACCCCCCAATCCAAAAAAAATTCCCTCCAAATTCCCCCTCAAATTATACAAATCCCCCGGGGGCCCCACAGGCGTTCAATTTTCCCGGCCGGGGGGTTATTTCAAAAAGGTTTTTGGGCCCGGAATTTTTTTTTGGGTGGCCCATCGATCGATGTTTTTTTTTAAATCTTCCCCT]




>consensus_708#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTCTGGGGGACCCCATTTTAAATGCCTTTTTTAAAATCAAAGGGGAACCCCCCAA
TCCAAAAAAAATTCCCTCCAAATTCCCCCTCAAATTATACAAATCCCCCGGGGGCCCCAC
AGGCGTTCAATTTTCCCGGCCGGGGGGTTATTTCAAAAAGGTTTTTGGGCCCGGAATTTT
TTTTTGGGTGGCCCATCGATCGATGTTTTTTTTTAAATCTTCCCCT

consensusID : consensus_708#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAATTCCCTCCAAATTCCCCCTCAAATGATACAAATCCCCCGGGGGCCCCACAGGCGTTCAATTTTGCCGGCGGGGGGGTCATTTCAAAAAGGGTTTTGGGCCAGGAATTTTTTTTTGGGGGGCCCATCGATCGATGATCTTTTTTAAATCTTCCCCTTTTCCAAAAAACGTTG]

[+] EMBL CF300021             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAATTCCCTCCAAATTCCCCCTCAAATGATACAAATCCCCCGGGGGCCCCACAGGCGTTCAATTTTGCCGGCGGGGGGGTCATTTCAAAAAGGGTTTTGGGCCAGGAATTTTTTTTTGGGGGGCCCATCGATCGATGATCTTTTTTAAATCTTCCCCTTTTCCAAAAAACGTTG]




>consensus_708#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTAAAAAAAAATTCCCTCCAAATTCCCCCTCAAATGATACAAATCCCCCGG
GGGCCCCACAGGCGTTCAATTTTGCCGGCGGGGGGGTCATTTCAAAAAGGGTTTTGGGCC
AGGAATTTTTTTTTGGGGGGCCCATCGATCGATGATCTTTTTTAAATCTTCCCCTTTTCC
AAAAAACGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_708#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_708#1      ----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56
                         ********************************************************

consensus_708#0      TTTTTTTCTGGGGGACCCCATTTTAAATGCCTTTTTTAAAATCAAAGGGGAACCCCCCAA 120
consensus_708#1      TTTTTTTTT----------------------TTTTTTAAAA------------------- 75
                     ******* *                      **********                   

consensus_708#0      TCCAAAAAAAATTCCCTCCAAATTCCCCCTCAAATTATACAAATCCCCCGGGGGCCCCAC 180
consensus_708#1      ------AAAAATTCCCTCCAAATTCCCCCTCAAATGATACAAATCCCCCGGGGGCCCCAC 129
                           ***************************** ************************

consensus_708#0      AGGCGTTCAATTTTCCCGGCCGGGGGGTTATTTCAAAAAGGTTTTTGGGCCCGGAATTTT 240
consensus_708#1      AGGCGTTCAATTTTGCCGGCGGGGGGGTCATTTCAAAAAGGGTTTTGGGCCAGGAATTTT 189
                     ************** ***** ******* ************ ********* ********

consensus_708#0      TTTTTGGGTGGCCCATCGATCGATGTTTTTTTTTAAATCTTCCCCT-------------- 286
consensus_708#1      TTTTTGGGGGGCCCATCGATCGATGATCTTTTTTAAATCTTCCCCTTTTCCAAAAAACGT 249
                     ******** **************** * ******************              

consensus_708#0      --
consensus_708#1      TG 251