These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence [TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAACAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCATTTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGCAGTTCTCTAGAACA] [+] EMBL CB644981 [TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAACAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCATTTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGCAGTTCTCTAGAACA] [+] EMBL CB638675 [ ATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAG ] consensusID : consensus_7083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 803 fasta sequence [AATCCATCAGGTGATCATTATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGATGGTTCAAAAGACAAAAGAAAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACTCAGGGACAGTTGTTGAAGGATCCACAGTACACAGAACGGGAACTCAAATTTCTTCTTGGACCCAACAA] [+] EMBL CB668567 [AATCCATCAGGTGATCATTATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGATGGTTCAAAAGACAAAAGAAAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACTCAGGGACAGTTGTTGAAGGATCCACAGTACACAGAACGGGAACTCAAATTTCTTCTTGGACCCAACAA] consensusID : consensus_7083#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATTATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTANTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTAAACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAGANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGACCCGGG] [+] EMBL AU175177 [TTTTTTTTTTTTTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATTATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTANTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTAAACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAGANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGACCCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7083#0 TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATT 60 consensus_7083#2 -TTTTTTTTTTT-------------TTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATT 46 consensus_7083#1 -----------------------------------------AATCCATCAGGTGATCATT 19 *********** * ***** consensus_7083#0 ATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTA 120 consensus_7083#2 ATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTA 106 consensus_7083#1 ATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTA 79 ******** **** * **************************** **** ********** consensus_7083#0 CTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTA 180 consensus_7083#2 NTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTA 166 consensus_7083#1 CTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTA 139 ************* *********** * ***** *** ****** ***** ******* consensus_7083#0 AACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAG 240 consensus_7083#2 AACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAG 226 consensus_7083#1 AACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAG 199 *********************** ******* **************** * ********* consensus_7083#0 AATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATT-CTAAAACTCTGCAGAGCCTGGAA 299 consensus_7083#2 ANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGA 286 consensus_7083#1 AATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATT-CTAAAACTCTGCAGAGCCTGGAA 258 * * *********** ***************** ** ********************* * consensus_7083#0 CCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTC 359 consensus_7083#2 CCCGGG------------------------------------------------------ 292 consensus_7083#1 CCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTC 318 ****** consensus_7083#0 TTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGT 419 consensus_7083#2 ------------------------------------------------------------ consensus_7083#1 TTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGT 378 consensus_7083#0 ACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAA 479 consensus_7083#2 ------------------------------------------------------------ consensus_7083#1 ACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAA 438 consensus_7083#0 GACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCA 539 consensus_7083#2 ------------------------------------------------------------ consensus_7083#1 GACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCA 498 consensus_7083#0 TTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTG 599 consensus_7083#2 ------------------------------------------------------------ consensus_7083#1 TTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTG 558 consensus_7083#0 GATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCAT 659 consensus_7083#2 ------------------------------------------------------------ consensus_7083#1 GATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCAT 618 consensus_7083#0 GCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAA 719 consensus_7083#2 ------------------------------------------------------------ consensus_7083#1 GCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGAT---GGTTCAAAAGACAAAAGA 675 consensus_7083#0 CAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCAT 779 consensus_7083#2 ------------------------------------------------------------ consensus_7083#1 AAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACT 735 consensus_7083#0 TTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGC 839 consensus_7083#2 ------------------------------------------------------------ consensus_7083#1 CAGGGACAGTTGTTGAAGGATCCACAGTACACAGA--ACGGGAACTCAAATTTCTTCTTG 793 consensus_7083#0 AGTTCTCTAGAACA 853 consensus_7083#2 -------------- consensus_7083#1 GACCCAACAA---- 803 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||