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Oryza sativa
cluster # 7083 cluster # 7083       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7083#0 length = 853 sequences # 2  
consensus_7083#1 length = 803 sequences # 1  
consensus_7083#2 length = 292 sequences # 1  

consensusID : consensus_7083#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 853
fasta sequence
                              [TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAACAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCATTTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGCAGTTCTCTAGAACA]

[+] EMBL CB644981             [TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAACAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCATTTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGCAGTTCTCTAGAACA]
[+] EMBL CB638675             [                                    ATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAG                                                                                                                                                                                                                                                                                                                    ]


>consensus_7083#0 TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATT ATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTA CTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTA AACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAG AATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAAC CCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCT TTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTA CCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAG ACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCAT TGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGG ATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATG CTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAAC AAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCATT TAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGCA GTTCTCTAGAACA



consensusID : consensus_7083#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence
                              [AATCCATCAGGTGATCATTATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGATGGTTCAAAAGACAAAAGAAAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACTCAGGGACAGTTGTTGAAGGATCCACAGTACACAGAACGGGAACTCAAATTTCTTCTTGGACCCAACAA]

[+] EMBL CB668567             [AATCCATCAGGTGATCATTATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGATGGTTCAAAAGACAAAAGAAAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACTCAGGGACAGTTGTTGAAGGATCCACAGTACACAGAACGGGAACTCAAATTTCTTCTTGGACCCAACAA]


>consensus_7083#1 AATCCATCAGGTGATCATTATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAAT GAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGAT GTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGA AATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAA ACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAG TTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCAT ATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGC GAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCC GAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGA AAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTT CTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGATGGT TCAAAAGACAAAAGAAAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTT ACCCATTTGCCTACTCAGGGACAGTTGTTGAAGGATCCACAGTACACAGAACGGGAACTC AAATTTCTTCTTGGACCCAACAA



consensusID : consensus_7083#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATTATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTANTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTAAACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAGANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGACCCGGG]

[+] EMBL AU175177             [TTTTTTTTTTTTTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATTATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTANTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTAAACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAGANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGACCCGGG]


>consensus_7083#2 TTTTTTTTTTTTTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATTATAACACGNCCAGT AACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTANTCCAAACAACAAA NTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTAAACTCTGTACAATG AAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAGANTNTTGCAAAAAG TNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGACCCGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7083#0      TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATT 60
consensus_7083#2      -TTTTTTTTTTT-------------TTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATT 46
consensus_7083#1      -----------------------------------------AATCCATCAGGTGATCATT 19
                                                               *********** * *****

consensus_7083#0      ATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTA 120
consensus_7083#2      ATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTA 106
consensus_7083#1      ATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTA 79
                      ******** **** * **************************** **** **********

consensus_7083#0      CTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTA 180
consensus_7083#2      NTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTA 166
consensus_7083#1      CTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTA 139
                       ************* ***********  * ***** *** ****** ***** *******

consensus_7083#0      AACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAG 240
consensus_7083#2      AACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAG 226
consensus_7083#1      AACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAG 199
                      *********************** ******* **************** * *********

consensus_7083#0      AATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATT-CTAAAACTCTGCAGAGCCTGGAA 299
consensus_7083#2      ANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGA 286
consensus_7083#1      AATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATT-CTAAAACTCTGCAGAGCCTGGAA 258
                      * * *********** ***************** ** ********************* *

consensus_7083#0      CCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTC 359
consensus_7083#2      CCCGGG------------------------------------------------------ 292
consensus_7083#1      CCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTC 318
                      ******                                                      

consensus_7083#0      TTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGT 419
consensus_7083#2      ------------------------------------------------------------
consensus_7083#1      TTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGT 378
                                                                                  

consensus_7083#0      ACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAA 479
consensus_7083#2      ------------------------------------------------------------
consensus_7083#1      ACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAA 438
                                                                                  

consensus_7083#0      GACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCA 539
consensus_7083#2      ------------------------------------------------------------
consensus_7083#1      GACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCA 498
                                                                                  

consensus_7083#0      TTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTG 599
consensus_7083#2      ------------------------------------------------------------
consensus_7083#1      TTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTG 558
                                                                                  

consensus_7083#0      GATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCAT 659
consensus_7083#2      ------------------------------------------------------------
consensus_7083#1      GATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCAT 618
                                                                                  

consensus_7083#0      GCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAA 719
consensus_7083#2      ------------------------------------------------------------
consensus_7083#1      GCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGAT---GGTTCAAAAGACAAAAGA 675
                                                                                  

consensus_7083#0      CAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCAT 779
consensus_7083#2      ------------------------------------------------------------
consensus_7083#1      AAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACT 735
                                                                                  

consensus_7083#0      TTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGC 839
consensus_7083#2      ------------------------------------------------------------
consensus_7083#1      CAGGGACAGTTGTTGAAGGATCCACAGTACACAGA--ACGGGAACTCAAATTTCTTCTTG 793
                                                                                  

consensus_7083#0      AGTTCTCTAGAACA 853
consensus_7083#2      --------------
consensus_7083#1      GACCCAACAA---- 803
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)