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Oryza sativa
cluster # 7086 cluster # 7086       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7086#0 length = 821 sequences # 1  
consensus_7086#1 length = 779 sequences # 1  
consensus_7086#2 length = 691 sequences # 2  

consensusID : consensus_7086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 821
fasta sequence
                              [GTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGGTACGTCCCGTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAAATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTTCATCAACAATTCACTATGTTCATCAGGGTCAGTAATTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTTTGTGCGTGCAAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAATGAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATATACTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGGAGATGGAATATATGTTTAAAATAGAAGAGATGGATCATTCAATCGGCTGAAACTGTTCGTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGATCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATTTTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG]

[+] EMBL CB644281             [GTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGGTACGTCCCGTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAAATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTTCATCAACAATTCACTATGTTCATCAGGGTCAGTAATTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTTTGTGCGTGCAAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAATGAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATATACTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGGAGATGGAATATATGTTTAAAATAGAAGAGATGGATCATTCAATCGGCTGAAACTGTTCGTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGATCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATTTTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG]


>consensus_7086#0 GTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACA CGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCG GAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTG CGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCG CCGGCGCCGCCTCTTCCACCGGGTACGTCCCGTTGGGCTTTTGCCTACCTCGTCCCTCCT CTCATGGGCTCATGGCAAATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTTCATCA ACAATTCACTATGTTCATCAGGGTCAGTAATTGATATCAACTGAAAACTTTTAGTGGTAA ACTTACACTAGTTTGTGCGTGCAAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAA TCTAATGAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTAC ATATACTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATA TTTGGAGATGGAATATATGTTTAAAATAGAAGAGATGGATCATTCAATCGGCTGAAACTG TTCGTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAA TGATCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAAT ATTTTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG



consensusID : consensus_7086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence
                              [CCTACTATTATTGAATTCCCAGAGCCAACAAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGAAGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTTGCTATAACAAATTTATATGCCTAGTCTAGAAGCTACTTGAATTGCTGGTCTGCTGGATTAACCATAGGCACCCTCTCAATTCTTACAGGCTGATCGACGCCGTCCACGGAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCAAGTGTTGAGAATGTTACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCCCGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGATCGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATCAATAAACCATGATGCTGATGCAACGTGGTAGCTCTCCTAAAGACAACTGGATGGGTTTTCAGAGCAATAGAGACTCAAGATGCAAACATTATTACTGTGTTTCAAAGCTCTGTCTGCCACTTTTGGATGGCTTCATCCCCACTGAACTGTTGCTGTTGTCCTTAGGTTCTTCATAAATGACAATATGGCATGTTGTGCTACTGCATACAGAAGCAATGAAGCATTTGTCCAAGTCATGGGTGAGGCCCCTATAAACGTTGCATACTTGCATAATGTCAGAGGTTTCATTAATTGAGTAGTTTCAGTACAGAAGAC]

[+] EMBL CB644282             [CCTACTATTATTGAATTCCCAGAGCCAACAAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGAAGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTTGCTATAACAAATTTATATGCCTAGTCTAGAAGCTACTTGAATTGCTGGTCTGCTGGATTAACCATAGGCACCCTCTCAATTCTTACAGGCTGATCGACGCCGTCCACGGAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCAAGTGTTGAGAATGTTACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCCCGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGATCGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATCAATAAACCATGATGCTGATGCAACGTGGTAGCTCTCCTAAAGACAACTGGATGGGTTTTCAGAGCAATAGAGACTCAAGATGCAAACATTATTACTGTGTTTCAAAGCTCTGTCTGCCACTTTTGGATGGCTTCATCCCCACTGAACTGTTGCTGTTGTCCTTAGGTTCTTCATAAATGACAATATGGCATGTTGTGCTACTGCATACAGAAGCAATGAAGCATTTGTCCAAGTCATGGGTGAGGCCCCTATAAACGTTGCATACTTGCATAATGTCAGAGGTTTCATTAATTGAGTAGTTTCAGTACAGAAGAC]


>consensus_7086#1 CCTACTATTATTGAATTCCCAGAGCCAACAAAATGATTCATTTAGAACGTATGGGTGCTA AATACAAAAAGAAGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATC ATATCACTTCTTGCTATAACAAATTTATATGCCTAGTCTAGAAGCTACTTGAATTGCTGG TCTGCTGGATTAACCATAGGCACCCTCTCAATTCTTACAGGCTGATCGACGCCGTCCACG GAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCA AGTGTTGAGAATGTTACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCCCGC CCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGATCGG AGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATCAATAAACCATGATGCT GATGCAACGTGGTAGCTCTCCTAAAGACAACTGGATGGGTTTTCAGAGCAATAGAGACTC AAGATGCAAACATTATTACTGTGTTTCAAAGCTCTGTCTGCCACTTTTGGATGGCTTCAT CCCCACTGAACTGTTGCTGTTGTCCTTAGGTTCTTCATAAATGACAATATGGCATGTTGT GCTACTGCATACAGAAGCAATGAAGCATTTGTCCAAGTCATGGGTGAGGCCCCTATAAAC GTTGCATACTTGCATAATGTCAGAGGTTTCATTAATTGAGTAGTTTCAGTACAGAAGAC



consensusID : consensus_7086#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 691
fasta sequence
                              [GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATGATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAGCACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATAGTAGGA]

[+] EMBL AK062660             [GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATGATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAGCACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATAGTAGGA]
[+] EMBL CF196453             [                                                                                                                                                                                                                                                                           GGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGACAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATAATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAACACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATtn     ]


>consensus_7086#2 GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCGT CGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAG GAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTC GGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTC GCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGA CCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATT TTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAA CGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAAT TGAGAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGC ATATAAATTTGTTATAGCAAGAAGTGATATGATATGCTAGTAAAATAGATCATGATTCAT GTGTATTCAACCATATCTTCTTTTTGTATTTAGCACCCATACGTTCTAAATGAATCATTT TGTTGGCTCTGGGAATTCAATAATAGTAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7086#0      -------------------------------------GTCCCGTTCCCGGCGATCGCCG- 22
consensus_7086#2      GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCG- 59
consensus_7086#1      ----------------------------------------------CCTACTATTATTGA 14
                                                                    **  * **    * 

consensus_7086#0      -TCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGG 81
consensus_7086#2      -TCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGG 118
consensus_7086#1      ATTCCCAGAGCCAAC--AAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGA 72
                       *   * **** * *   * **   **    * ***  * * *   *      **   * 

consensus_7086#0      AGGAGGCGGTGCTCCGACGTGG-TCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGG 140
consensus_7086#2      AGGAGGCGGTGCTCCGACGTGG-TCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGG 177
consensus_7086#1      AGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTT 132
                      **     * **     ** **  **    ***  *   *    *                

consensus_7086#0      GTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGA 200
consensus_7086#2      GTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGA 237
consensus_7086#1      GCTATAACAAATTTATATGCC--TAGTCTAGAAGCTACTTGAATTGCTGGTCT-GCTGGA 189
                      *       *         ***    *   ** **   **      *****    *** **

consensus_7086#0      CTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACC 260
consensus_7086#2      CTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACC 297
consensus_7086#1      TT---AACCATAGGCACCCTCTCAATTCTTACAG-GCTGATCGACGCCG-----TCCACG 240
                       *   * *   ***  *  **  *   *    *  *     ** *****     ***** 

consensus_7086#0      GGGTACGTCCC--GTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAA 318
consensus_7086#2      GGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGA 357
consensus_7086#1      GAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCA 300
                      *      *                         *           *      *      *

consensus_7086#0      ATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTT-CATCAACAAT--TCACTATGTT 375
consensus_7086#2      ATT--TTCTCCAACGTATGTA-ACATTCTCAACACTTGCACTTGTTATCCTCACGATATT 414
consensus_7086#1      AGTG--TTGAGAATGT-TACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCC 357
                      * *   *    *   *       *  *      * **             *    **   

consensus_7086#0      CATCAGGGT-CAGTAA-TTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTT 433
consensus_7086#2      CACCAACGT-T-GTGT-TCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCC 471
consensus_7086#1      CGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGAT 417
                      *  *    *    *   *   *            *  *     *            **  

consensus_7086#0      TGTG------CGTGC-AAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAAT 486
consensus_7086#2      TGTA------AGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACC--AGCAATTCAAG 523
consensus_7086#1      CGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATC--AATAAACCATG 475
                       *                *    *     *  * *         * *  *  **   *  

consensus_7086#0      GAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATA-TA 545
consensus_7086#2      TAGCTTCTA---GACTAGGCATATAAATTTGT---TATAGCAAGAAGTGATATGATA-TG 576
consensus_7086#1      ATGCTGATG--CAACGTGGTAGCT---CTCCTAAAGACAACTGGATGGGTTTTCAGAGCA 530
                        * *  *     *    * *       *  *    * *           *   * *   

consensus_7086#0      CTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGG 605
consensus_7086#2      CTAGTAAAATAGATCATGA-------TTCATGTGTATTCAACCATATCTTCTTTTTGTAT 629
consensus_7086#1      ATAGAGACTCAAGATGCAAAC-----ATTATTACTGTGTTTCAAAGCTCTGTCTGCCACT 585
                       **   *   *       *          **   * *    * *     * * *      

consensus_7086#0      AGATGGAATATATGTTTAAAATAGAAGAGATGGATCATT-CAATCGGC-TGAAACTGTTC 663
consensus_7086#2      TTAGCACCCATACGTTCTAAAT---------GAATCATT-TTGTTGGC-TCTGGGAATTC 678
consensus_7086#1      TTTGGATGGCTTCATCCCCACT---------GAACTGTTGCTGTTGTCCTTAGGTTCTTC 636
                                *   *    * *         * *   **    * * * *       ***

consensus_7086#0      GTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGA 723
consensus_7086#2      AATAATAGTAGGA----------------------------------------------- 691
consensus_7086#1      ATAAATGACAATATG---------GCATGTTGTGCTACTGCATACAGAAGCAATGAAGCA 687
                          *       *                                               

consensus_7086#0      TCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATT 783
consensus_7086#2      ------------------------------------------------------------
consensus_7086#1      TTTGTCCAAGTCATGGGTGAGGCCCCTATAA-ACGTTGCATACTTGCATAATGTCAGAGG 746
                                                                                  

consensus_7086#0      TTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG 821
consensus_7086#2      --------------------------------------
consensus_7086#1      TTTCATTAATTGAGTAGTTTCAGTACAGAAGAC----- 779
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)