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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence
[GTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGGTACGTCCCGTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAAATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTTCATCAACAATTCACTATGTTCATCAGGGTCAGTAATTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTTTGTGCGTGCAAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAATGAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATATACTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGGAGATGGAATATATGTTTAAAATAGAAGAGATGGATCATTCAATCGGCTGAAACTGTTCGTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGATCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATTTTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG]
[+] EMBL CB644281 [GTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGGTACGTCCCGTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAAATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTTCATCAACAATTCACTATGTTCATCAGGGTCAGTAATTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTTTGTGCGTGCAAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAATGAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATATACTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGGAGATGGAATATATGTTTAAAATAGAAGAGATGGATCATTCAATCGGCTGAAACTGTTCGTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGATCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATTTTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG]
consensusID : consensus_7086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence
[CCTACTATTATTGAATTCCCAGAGCCAACAAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGAAGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTTGCTATAACAAATTTATATGCCTAGTCTAGAAGCTACTTGAATTGCTGGTCTGCTGGATTAACCATAGGCACCCTCTCAATTCTTACAGGCTGATCGACGCCGTCCACGGAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCAAGTGTTGAGAATGTTACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCCCGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGATCGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATCAATAAACCATGATGCTGATGCAACGTGGTAGCTCTCCTAAAGACAACTGGATGGGTTTTCAGAGCAATAGAGACTCAAGATGCAAACATTATTACTGTGTTTCAAAGCTCTGTCTGCCACTTTTGGATGGCTTCATCCCCACTGAACTGTTGCTGTTGTCCTTAGGTTCTTCATAAATGACAATATGGCATGTTGTGCTACTGCATACAGAAGCAATGAAGCATTTGTCCAAGTCATGGGTGAGGCCCCTATAAACGTTGCATACTTGCATAATGTCAGAGGTTTCATTAATTGAGTAGTTTCAGTACAGAAGAC]
[+] EMBL CB644282 [CCTACTATTATTGAATTCCCAGAGCCAACAAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGAAGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTTGCTATAACAAATTTATATGCCTAGTCTAGAAGCTACTTGAATTGCTGGTCTGCTGGATTAACCATAGGCACCCTCTCAATTCTTACAGGCTGATCGACGCCGTCCACGGAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCAAGTGTTGAGAATGTTACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCCCGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGATCGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATCAATAAACCATGATGCTGATGCAACGTGGTAGCTCTCCTAAAGACAACTGGATGGGTTTTCAGAGCAATAGAGACTCAAGATGCAAACATTATTACTGTGTTTCAAAGCTCTGTCTGCCACTTTTGGATGGCTTCATCCCCACTGAACTGTTGCTGTTGTCCTTAGGTTCTTCATAAATGACAATATGGCATGTTGTGCTACTGCATACAGAAGCAATGAAGCATTTGTCCAAGTCATGGGTGAGGCCCCTATAAACGTTGCATACTTGCATAATGTCAGAGGTTTCATTAATTGAGTAGTTTCAGTACAGAAGAC]
consensusID : consensus_7086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence
[GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATGATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAGCACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATAGTAGGA]
[+] EMBL AK062660 [GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATGATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAGCACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATAGTAGGA]
[+] EMBL CF196453 [ GGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGACAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATAATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAACACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATtn ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7086#0 -------------------------------------GTCCCGTTCCCGGCGATCGCCG- 22
consensus_7086#2 GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCG- 59
consensus_7086#1 ----------------------------------------------CCTACTATTATTGA 14
** * ** *
consensus_7086#0 -TCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGG 81
consensus_7086#2 -TCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGG 118
consensus_7086#1 ATTCCCAGAGCCAAC--AAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGA 72
* * **** * * * ** ** * *** * * * * ** *
consensus_7086#0 AGGAGGCGGTGCTCCGACGTGG-TCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGG 140
consensus_7086#2 AGGAGGCGGTGCTCCGACGTGG-TCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGG 177
consensus_7086#1 AGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTT 132
** * ** ** ** ** *** * * *
consensus_7086#0 GTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGA 200
consensus_7086#2 GTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGA 237
consensus_7086#1 GCTATAACAAATTTATATGCC--TAGTCTAGAAGCTACTTGAATTGCTGGTCT-GCTGGA 189
* * *** * ** ** ** ***** *** **
consensus_7086#0 CTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACC 260
consensus_7086#2 CTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACC 297
consensus_7086#1 TT---AACCATAGGCACCCTCTCAATTCTTACAG-GCTGATCGACGCCG-----TCCACG 240
* * * *** * ** * * * * ** ***** *****
consensus_7086#0 GGGTACGTCCC--GTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAA 318
consensus_7086#2 GGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGA 357
consensus_7086#1 GAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCA 300
* * * * * *
consensus_7086#0 ATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTT-CATCAACAAT--TCACTATGTT 375
consensus_7086#2 ATT--TTCTCCAACGTATGTA-ACATTCTCAACACTTGCACTTGTTATCCTCACGATATT 414
consensus_7086#1 AGTG--TTGAGAATGT-TACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCC 357
* * * * * * * * ** * **
consensus_7086#0 CATCAGGGT-CAGTAA-TTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTT 433
consensus_7086#2 CACCAACGT-T-GTGT-TCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCC 471
consensus_7086#1 CGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGAT 417
* * * * * * * * * **
consensus_7086#0 TGTG------CGTGC-AAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAAT 486
consensus_7086#2 TGTA------AGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACC--AGCAATTCAAG 523
consensus_7086#1 CGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATC--AATAAACCATG 475
* * * * * * * * * ** *
consensus_7086#0 GAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATA-TA 545
consensus_7086#2 TAGCTTCTA---GACTAGGCATATAAATTTGT---TATAGCAAGAAGTGATATGATA-TG 576
consensus_7086#1 ATGCTGATG--CAACGTGGTAGCT---CTCCTAAAGACAACTGGATGGGTTTTCAGAGCA 530
* * * * * * * * * * * * *
consensus_7086#0 CTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGG 605
consensus_7086#2 CTAGTAAAATAGATCATGA-------TTCATGTGTATTCAACCATATCTTCTTTTTGTAT 629
consensus_7086#1 ATAGAGACTCAAGATGCAAAC-----ATTATTACTGTGTTTCAAAGCTCTGTCTGCCACT 585
** * * * ** * * * * * * *
consensus_7086#0 AGATGGAATATATGTTTAAAATAGAAGAGATGGATCATT-CAATCGGC-TGAAACTGTTC 663
consensus_7086#2 TTAGCACCCATACGTTCTAAAT---------GAATCATT-TTGTTGGC-TCTGGGAATTC 678
consensus_7086#1 TTTGGATGGCTTCATCCCCACT---------GAACTGTTGCTGTTGTCCTTAGGTTCTTC 636
* * * * * * ** * * * * ***
consensus_7086#0 GTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGA 723
consensus_7086#2 AATAATAGTAGGA----------------------------------------------- 691
consensus_7086#1 ATAAATGACAATATG---------GCATGTTGTGCTACTGCATACAGAAGCAATGAAGCA 687
* *
consensus_7086#0 TCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATT 783
consensus_7086#2 ------------------------------------------------------------
consensus_7086#1 TTTGTCCAAGTCATGGGTGAGGCCCCTATAA-ACGTTGCATACTTGCATAATGTCAGAGG 746
consensus_7086#0 TTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG 821
consensus_7086#2 --------------------------------------
consensus_7086#1 TTTCATTAATTGAGTAGTTTCAGTACAGAAGAC----- 779
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||