cluster # 7087

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Oryza sativa
cluster # 7087 cluster # 7087 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7087#0 length = 618 sequences # 1

consensus_7087#1 length = 612 sequences # 2
consensus_7087#2 length = 355 sequences # 1

consensusID : consensus_7087#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGATATTTCCTGTGCCCGCATATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTAGCCACAAACATACATAATCGTCCATGGACATGTCCTATGCCAGTTATTATGCCAGTACATCGTTTTGGAGCCCCAGCGATGACGATGGTTGCCTTGGCAATGACGATGACAAAGCTAGTGCAGCAGCATCCTCTCATCTAACAGGTTGCATATCTTGGAAGGATGTTGGTGCGATAGCATTTTTCGGTGGTAAGTGAAAGAACATCATACATCTGACTAACTCATCCTCGATTAGATAAAGTACAGAGCAATAAGCAAAGCACTAATTAATCTGGGAGTTTCCACGCCTTTTGTTTCAAGTCACTATCTCTTTGAGTTAAAGGTAATTAAGTATATGCAGATTTGGACCAAATCAATTCTATTTATTGCTCACATCTAGTTTTAGGCTTTTAGCAAGGACCACAAGAACTCCTGTAATAGCTGATTACAACTAATGATCAATGCANCNNTNNTCACCTACTCACCTATAATGTAGNTGTNGNAAATGNNNNNTCANCTATGNNNNNG]

[+] EMBL CF196863             [CTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGATATTTCCTGTGCCCGCATATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTAGCCACAAACATACATAATCGTCCATGGACATGTCCTATGCCAGTTATTATGCCAGTACATCGTTTTGGAGCCCCAGCGATGACGATGGTTGCCTTGGCAATGACGATGACAAAGCTAGTGCAGCAGCATCCTCTCATCTAACAGGTTGCATATCTTGGAAGGATGTTGGTGCGATAGCATTTTTCGGTGGTAAGTGAAAGAACATCATACATCTGACTAACTCATCCTCGATTAGATAAAGTACAGAGCAATAAGCAAAGCACTAATTAATCTGGGAGTTTCCACGCCTTTTGTTTCAAGTCACTATCTCTTTGAGTTAAAGGTAATTAAGTATATGCAGATTTGGACCAAATCAATTCTATTTATTGCTCACATCTAGTTTTAGGCTTTTAGCAAGGACCACAAGAACTCCTGTAATAGCTGATTACAACTAATGATCAATGCANCNNTNNTCACCTACTCACCTATAATGTAGNTGTNGNAAATGNNNNNTCANCTATGNNNNNG]




>consensus_7087#0
CTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGATATTTCCTGTGCCCGCATATGC
TTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTAGCCACAAAC
ATACATAATCGTCCATGGACATGTCCTATGCCAGTTATTATGCCAGTACATCGTTTTGGA
GCCCCAGCGATGACGATGGTTGCCTTGGCAATGACGATGACAAAGCTAGTGCAGCAGCAT
CCTCTCATCTAACAGGTTGCATATCTTGGAAGGATGTTGGTGCGATAGCATTTTTCGGTG
GTAAGTGAAAGAACATCATACATCTGACTAACTCATCCTCGATTAGATAAAGTACAGAGC
AATAAGCAAAGCACTAATTAATCTGGGAGTTTCCACGCCTTTTGTTTCAAGTCACTATCT
CTTTGAGTTAAAGGTAATTAAGTATATGCAGATTTGGACCAAATCAATTCTATTTATTGC
TCACATCTAGTTTTAGGCTTTTAGCAAGGACCACAAGAACTCCTGTAATAGCTGATTACA
ACTAATGATCAATGCANCNNTNNTCACCTACTCACCTATAATGTAGNTGTNGNAAATGNN
NNNTCANCTATGNNNNNG

consensusID : consensus_7087#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 612
fasta sequence

                              [TCCACTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGAAGCTATTTCCTGTGCCCGCAGATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTGGCCACAAACATACATAATCGTCCATGGACAGGTCCTATGCCAGTTATTATGCCCCCTGATGGTAATGCTTCCTCATAAACACCAGATCCTGCAAGCTGGGAGAGCTCGAGGAAGGAGGCGCCGGGGTCGAGCAGGCGGTCGATGCGCTCCCGCGGGAGCAGCTTCCCCCGCGCCTTGTTCCGCCTCACCGCCTCCGCGCCTCCCCCGGCCAGCACCTGGGAGACGCGGGCGCGGAGGTCGGAGAGGAGGCCGCCCACCGCGGCGGCGTTGCGGGCGTGCGCGTCGGAGGCCCGGTCGAGGCCGTCGGGGAGCACCGAGGCGCCGCCCCCGTGGGCGTACGCCGCGGCCGCCGCAGCGGCCGACGAGGGGTACCCCGCGGTCGCCGGCGGCCGGAGACGCCGCGCGGCGAACCGGCGGAGCATGTCGGAGTCACTCCTCCTACGGCGGCGGGGGCGGGGCTCGTCGGAGTAGAGGAGTGTACGGAGGGACTTGCT]

[-] EMBL CB644370             [TCCACTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGAAGCTATTTCCTGTGCCCGCAGATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTGGCCACAAACATACATAATCGTCCATGGACAGGTCCTATGCCAGTTATTATGCCCCCTGATGGTAATGCTTCCTCATAAACACCAGATCCTGCAAGCTGGGAGAGCTCGAGGAAGGAGGCGCCGGGGTCGAGCAGGCGGTCGATGCGCTCCCGCGGGAGCAGCTTCCCCCGCGCCTTGTTCCGCCTCACCGCCTCCGCGCCTCCCCCGGCCAGCACCTGGGAGACGCGGGCGCGGAGGTCGGAGAGGAGGCCGCCCACCGCGGCGGCGTTGCGGGCGTGCGCGTCGGAGGCCCGGTCGAGGCCGTCGGGGAGCACCGAGGCGCCGCCCCCGTGGGCGTACGCCGCGGCCGCCGCAGCGGCCGACGAGGGGTACCCCGCGGTCGCCGGCGGCCGGAGACGCCGCGCGGCGAACCGGCGGAGCATGTCGGAGTCACTCCTCCTACGGCGGCGGGGGCGGGGCTCGTCGGAGTAGAGGAGTGTACGGAGGGACTT   ]
[-] EMBL CB666358             [                                                                                                                                                                                                                                  tGGAAGAAAGGACCAGGGTCGATCAGCCGGTCGATGCGCTCCCGCGGGAGCAGATTACCCCGCGCCGCGTCCCGCGTCACCGCAAACGCGCCTCCCCCGGCCAGCACCTGGGAGACGCGGGCGCGGAGGTAGGAGAGGAGGCCGCCCACCGCGGCGGCGTTGCGGGCGTGCGCGTCGGAGGCCCGGTCGAGGCCGTAGGGGAGCACCGAGGCGCCGCCCCCGTGGGCGTACGCCGCGGCCGCCGCAGCGGCCGACGAGGGGTACCCCGCGGTCGCCGGCGGCCGGAGACGCCGCGCGGCGAACCGGCGGAGCATGTCGGAGTCACTCCTCCTACGGCGGCGGGGGCGGGGCTCGTCGGAGTAGAGGAGTGTACGGAAGGACTTGCT]




>consensus_7087#1
TCCACTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGAAGCTATTTCCTGTGCCCG
CAGATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTGGC
CACAAACATACATAATCGTCCATGGACAGGTCCTATGCCAGTTATTATGCCCCCTGATGG
TAATGCTTCCTCATAAACACCAGATCCTGCAAGCTGGGAGAGCTCGAGGAAGGAGGCGCC
GGGGTCGAGCAGGCGGTCGATGCGCTCCCGCGGGAGCAGCTTCCCCCGCGCCTTGTTCCG
CCTCACCGCCTCCGCGCCTCCCCCGGCCAGCACCTGGGAGACGCGGGCGCGGAGGTCGGA
GAGGAGGCCGCCCACCGCGGCGGCGTTGCGGGCGTGCGCGTCGGAGGCCCGGTCGAGGCC
GTCGGGGAGCACCGAGGCGCCGCCCCCGTGGGCGTACGCCGCGGCCGCCGCAGCGGCCGA
CGAGGGGTACCCCGCGGTCGCCGGCGGCCGGAGACGCCGCGCGGCGAACCGGCGGAGCAT
GTCGGAGTCACTCCTCCTACGGCGGCGGGGGCGGGGCTCGTCGGAGTAGAGGAGTGTACG
GAGGGACTTGCT

consensusID : consensus_7087#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [TCCACTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGAAGCTATTTCCTGTGCCCGCAGATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTGGCCACAAACATACATAATCGTCCATGGACAGGTCCTATGCCAGTTAGTATGCCCCCTGATGGTAATGCTTCCTCATAAACACCAGATCCTGCAAGCTGGGAGAGCTCGAGGAAGGAGGCGCCGGGGTCGAGCAGGCGGTCGATGCGCTCCCGCGGGAGCAGCTTCCCCCGCGCCTTGTTCCGCCTCGCCGCCTCCGCGCCTCCCCCGGCCAGCACCTACATATGTAAAAAGGAGTGC]

[-] EMBL CB645045             [TCCACTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGAAGCTATTTCCTGTGCCCGCAGATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTGGCCACAAACATACATAATCGTCCATGGACAGGTCCTATGCCAGTTAGTATGCCCCCTGATGGTAATGCTTCCTCATAAACACCAGATCCTGCAAGCTGGGAGAGCTCGAGGAAGGAGGCGCCGGGGTCGAGCAGGCGGTCGATGCGCTCCCGCGGGAGCAGCTTCCCCCGCGCCTTGTTCCGCCTCGCCGCCTCCGCGCCTCCCCCGGCCAGCACCTACATATGTAAAAAGGAGTGC]




>consensus_7087#2
TCCACTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGAAGCTATTTCCTGTGCCCG
CAGATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTGGC
CACAAACATACATAATCGTCCATGGACAGGTCCTATGCCAGTTAGTATGCCCCCTGATGG
TAATGCTTCCTCATAAACACCAGATCCTGCAAGCTGGGAGAGCTCGAGGAAGGAGGCGCC
GGGGTCGAGCAGGCGGTCGATGCGCTCCCGCGGGAGCAGCTTCCCCCGCGCCTTGTTCCG
CCTCGCCGCCTCCGCGCCTCCCCCGGCCAGCACCTACATATGTAAAAAGGAGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7087#1      TCCACTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGAAGCTATTTCCTGTGCCCG 60
consensus_7087#2      TCCACTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGAAGCTATTTCCTGTGCCCG 60
consensus_7087#0      ----CTGTCAACAAGATATATGCAAGGCAGTTTACATTCAGA---TATTTCCTGTGCCCG 53
                          **************************************   ***************

consensus_7087#1      CAGATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTGGC 120
consensus_7087#2      CAGATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTGGC 120
consensus_7087#0      CATATGCTTTTTGACAGTGATAGGATAGTATGTGCCCCCTTTTGTAGTTGGATCATTAGC 113
                      ** ****************************************************** **

consensus_7087#1      CACAAACATACATAATCGTCCATGGACAGGTCCTATGCCAGTTATTATGCCCCCTGATGG 180
consensus_7087#2      CACAAACATACATAATCGTCCATGGACAGGTCCTATGCCAGTTAGTATGCCCCCTGATGG 180
consensus_7087#0      CACAAACATACATAATCGTCCATGGACATGTCCTATGCCAGTTATTATGCCAGTACATCG 173
                      **************************** *************** ******     ** *

consensus_7087#1      TAATGCTTCCTCATAAACACCAGATCCTGC----------AAGCTGGGAGAGCTCGAGGA 230
consensus_7087#2      TAATGCTTCCTCATAAACACCAGATCCTGC----------AAGCTGGGAGAGCTCGAGGA 230
consensus_7087#0      TTTTGGAGCCCCAGCGATGACGATGGTTGCCTTGGCAATGACGATGACAAAGCTAGTGCA 233
                      *  **   ** **   *   *      ***          * * **  * **** * * *

consensus_7087#1      AGGAGGCGCCGGGGTCGAGCAGGCGGTCGATGCGCTCCCGCGGGAGCAGCTTCCCCCGCG 290
consensus_7087#2      AGGAGGCGCCGGGGTCGAGCAGGCGGTCGATGCGCTCCCGCGGGAGCAGCTTCCCCCGCG 290
consensus_7087#0      GCAGCATCCTCTCATCTAACAGGTTGCATAT---CTTGGAAGGATGTTGGTGCGATAGCA 290
                              *     ** * ****  *   **   **     **  *  * * *    ** 

consensus_7087#1      CCTT-----GTTCCGCCTCACCGCCTC-CGCGCCTCCCCCGGCCAGCACCTGGGAGACGC 344
consensus_7087#2      CCTT-----GTTCCGCCTCGCCGCCTC-CGCGCCTCCCCCGGCCAGCACCTAC-ATATGT 343
consensus_7087#0      TTTTTCGGTGGTAAGTGAAAGAACATCATACATCTGACTAACTCATCCTCGATTAGATAA 350
                        **     * *  *        * **   *  **  *     ** *  *    * *   

consensus_7087#1      GGGCGCGGAGGTCGGAGAGGAGGCCGCCCACCGCGGCGGCGTTGCGGGCGTGCGCGTCGG 404
consensus_7087#2      AAAAAGGAGTGC------------------------------------------------ 355
consensus_7087#0      AGTACAGAGCAATAAGCAAAGCACTAATTAATCTGGGAGTTTCCACGCCTTTTGTTTCAA 410
                            *                                                     

consensus_7087#1      AGGCCCGGTCGAGGCCGTCGGGGAGCACCGAGGCGCCGCCCCCGTGGGCGTACGCCGCGG 464
consensus_7087#2      ------------------------------------------------------------
consensus_7087#0      GTCACTATCTCTTTGAGTTAAAGGTAATTAAGTATATGCAGATTTGGACCAAATCAATTC 470
                                                                                  

consensus_7087#1      CCGCCGCAGCGGCCGACGAGGGGTACCCCGCGGTCGCCGGCGGCCGGAGACGCCGCG-CG 523
consensus_7087#2      ------------------------------------------------------------
consensus_7087#0      TATTTATTGCTCACATCTAGTTTTAGGCTTTTAGCAAGGACCACAAGAACTCCTGTAATA 530
                                                                                  

consensus_7087#1      GCGAAC--CGGCGGAGCATGTCGGAGTCACTCCTCCTACGGCGGCGGGGGCGGGGCTCGT 581
consensus_7087#2      ------------------------------------------------------------
consensus_7087#0      GCTGATTACAACTAATGATCAATGCANCNNTNNTCACCTACTCACCTATAATGTAGNTGT 590
                                                                                  

consensus_7087#1      CGGAGTAGAGGAGTGTACGGAGGGACTTGCT 612
consensus_7087#2      -------------------------------
consensus_7087#0      NGNAAATGNNNNNTCANCTATGNNNNNG--- 618