These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1592 fasta sequence [TGCCCCCGCGTCGTTGCGTTGCGTGCGGCCGTCGGGGATGGCGACGAGCGGCGCGGCGGCACGTCCTCCAGTGGCCACCACCCTCTCCGCGCGCCGTGGCACGGCTCCCTCCGCCACCGCCGCCGCCGCCTCCTGCCCCGCGTCGTCGGCGCGGCGCACTACCTGGAGGCCGCGGGCGAGGCTCTCCTCGGGGAACGCGGCGCGGGCGCGGGCGCGGCTGCTGCGTGTCGAGGCCTCCTCCATGGCCGACCCGGTCGAGGAGAGCCTCCCCGCGGCGCCGCACACGGCCACGGATGCTCCGTTGGAGACTCAGCCCCAGGTGCGCACCAGCATGTGGAATTGGAAGGGCTACAACATTCGGTACCAGTACGCGGGAACTTCTGGCCCTGCATTGGTTCTAATTCATGGTTTCGGAGCAAACAGTGACCATTGGCGGAAAAATATTCCTGTTCTTGCTCTGAAAAACAGAGTATATGCAATTGATCTTATTGGTTATGGCTATTCTGATAAGCCTAATCCACGTGAGCTTGGTGAGAGCTTTTATACTTTTGAGACATGGGGAGAACAGCTGAATACGTTTTGTGCTGAAGTTATTAAGAGCGAAGCTTTCTTCATATGCAATTCAATTGGAGGGCTTGTTGGTCTACAGGCAGCTGCTATGGAACCACAGAAGTGCAAGGGTATCTTTTTATTGAATATTTCATTGAGGATGCTTCATATCAGTAAGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCCTCTTTGTAGGCCATGTACTTGCATTTGAGTATTGGTGATAACACACCTGACTGATTGAATTTCAAGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCTCAGTAAATTAATTC] [+] EMBL CB644514 [TGCCCCCGCGTCGTTGCGTTGCGTGCGGCCGTCGGGGATGGCGACGAGCGGCGCGGCGGCACGTCCTCCAGTGGCCACCACCCTCTCCGCGCGCCGTGGCACGGCTCCCTCCGCCACCGCCGCCGCCGCCTCCTGCCCCGCGTCGTCGGCGCGGCGCACTACCTGGAGGCCGCGGGCGAGGCTCTCCTCGGGGAACGCGGCGCGGGCGCGGGCGCGGCTGCTGCGTGTCGAGGCCTCCTCCATGGCCGACCCGGTCGAGGAGAGCCTCCCCGCGGCGCCGCACACGGCCACGGATGCTCCGTTGGAGACTCAGCCCCAGGTGCGCACCAGCATGTGGAATTGGAAGGGCTACAACATTCGGTACCAGTACGCGGGAACTTCTGGCCCTGCATTGGTTCTAATTCATGGTTTCGGAGCAAACAGTGACCATTGGCGGAAAAATATTCCTGTTCTTGCTCTGAAAAACAGAGTATATGCAATTGATCTTATTGGTTATGGCTATTCTGATAAGCCTAATCCACGTGAGCTTGGTGAGAGCTTTTATACTTTTGAGACATGGGGAGAACAGCTGAATACGTTTTGTGCTGAAGTTATTAAGAGCGAAGCTTTCTTCATATGCAATTCAATTGGAGGGCTTGTTGGTCTACAGGCAGCTGCTATGGAACCACAGAAGTGCAAGGGTATCTTTTTATTGAATATTTCATTGAGGATGCTTCATATCAGTAAGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAAT ] [+] EMBL AK060302 [ AGCGAAGCTTTCTTCATATGCAATTCAATTGGAGGGCTTGTTGGTCTACAGGCAGCTGCTATGGAACCACAGAAGTGCAAGGGTATCTTTTTATTGAATATTTCATTGAGGATGCTTCATATCAGTAAGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCCTCTTTGTAGGCCATGTACTTGCATTTGAGTATTGGTGATAACACACCTGACTGATTGAATTTCAAGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCTCAGTAAATTAATTC] [-] EMBL CB674020 [ CAGCCAT GTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCTTCTTTGTAGGCCATGTACTTGCATTTGAGTATTGGTGATAACACACCTGACTGATTGAATTTCAAGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCTCAGT ] consensusID : consensus_7089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence [AGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCTTCTTTGTAGGCCATGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCT] [-] EMBL CB644515 [AGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCTTCTTTGTAGGCCATGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7089#0 TGCCCCCGCGTCGTTGCGTTGCGTGCGGCCGTCGGGGATGGCGACGAGCGGCGCGGCGGC 60 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 ACGTCCTCCAGTGGCCACCACCCTCTCCGCGCGCCGTGGCACGGCTCCCTCCGCCACCGC 120 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 CGCCGCCGCCTCCTGCCCCGCGTCGTCGGCGCGGCGCACTACCTGGAGGCCGCGGGCGAG 180 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 GCTCTCCTCGGGGAACGCGGCGCGGGCGCGGGCGCGGCTGCTGCGTGTCGAGGCCTCCTC 240 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 CATGGCCGACCCGGTCGAGGAGAGCCTCCCCGCGGCGCCGCACACGGCCACGGATGCTCC 300 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 GTTGGAGACTCAGCCCCAGGTGCGCACCAGCATGTGGAATTGGAAGGGCTACAACATTCG 360 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 GTACCAGTACGCGGGAACTTCTGGCCCTGCATTGGTTCTAATTCATGGTTTCGGAGCAAA 420 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 CAGTGACCATTGGCGGAAAAATATTCCTGTTCTTGCTCTGAAAAACAGAGTATATGCAAT 480 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 TGATCTTATTGGTTATGGCTATTCTGATAAGCCTAATCCACGTGAGCTTGGTGAGAGCTT 540 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 TTATACTTTTGAGACATGGGGAGAACAGCTGAATACGTTTTGTGCTGAAGTTATTAAGAG 600 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 CGAAGCTTTCTTCATATGCAATTCAATTGGAGGGCTTGTTGGTCTACAGGCAGCTGCTAT 660 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 GGAACCACAGAAGTGCAAGGGTATCTTTTTATTGAATATTTCATTGAGGATGCTTCATAT 720 consensus_7089#1 ------------------------------------------------------------ consensus_7089#0 CAGTAAGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAA 780 consensus_7089#1 -----AGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAA 55 ******************************************************* consensus_7089#0 TACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATAT 840 consensus_7089#1 TACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATAT 115 ************************************************************ consensus_7089#0 TCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCT 900 consensus_7089#1 TCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCT 175 ************************************************************ consensus_7089#0 GCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGG 960 consensus_7089#1 GCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGG 235 ************************************************************ consensus_7089#0 AGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGG 1020 consensus_7089#1 AGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGG 295 ************************************************************ consensus_7089#0 TGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGT 1080 consensus_7089#1 TGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGT 355 ************************************************************ consensus_7089#0 TGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCT 1140 consensus_7089#1 TGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCT 415 ************************************************************ consensus_7089#0 TGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGC 1200 consensus_7089#1 TGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGC 475 ************************************************************ consensus_7089#0 TTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACA 1260 consensus_7089#1 TTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACA 535 ************************************************************ consensus_7089#0 ACTATTTTATCTCAGGATACCAGATGGTCCCCTCTTTGTAGGCCATGTACTTGCATTTGA 1320 consensus_7089#1 ACTATTTTATCTCAGGATACCAGATGGTCCCTTCTTTGTAGGCCATG------------- 582 ******************************* *************** consensus_7089#0 GTATTGGTGATAACACACCTGACTGATTGAATTTCAAGGGATGACGAAGGAATCTGACTT 1380 consensus_7089#1 --------------------------------------GGATGACGAAGGAATCTGACTT 604 ********************** consensus_7089#0 ATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGA 1440 consensus_7089#1 ATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGA 664 ************************************************************ consensus_7089#0 GGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTT 1500 consensus_7089#1 GGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTT 724 ************************************************************ consensus_7089#0 CCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCAC 1560 consensus_7089#1 CCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCAC 784 ************************************************************ consensus_7089#0 TAGTATTAGCAGTCCCCTCAGTAAATTAATTC 1592 consensus_7089#1 TAGTATTAGCAGTCCCCT-------------- 802 ****************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||