cluster # 7092

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Oryza sativa
cluster # 7092 cluster # 7092 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7092#0 length = 659 sequences # 2

consensus_7092#1 length = 209 sequences # 1
consensus_7092#2 length = 70 sequences # 1

consensusID : consensus_7092#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 659
fasta sequence

                              [TTTCCCGGGTCTGACCCACGCGTCCCGACGCGTGGGTTGCAAGTCCAAATCTGAGCAAGCCATGGATCAGTGGTCCGAAATACCTTCGGATGTGGAATC-TTCTAGAGATGGTAGAAG-ATACACTTAGCGGTGAGGAGCTTAGCGACGCTGACAGTGCCCATATTGTT-GTCATGGACAAATACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGCGGGATTCAGTAAGAAGAAAACCTGCATCGTTCGTACTGACTATAGCCACCGGCCGTCCACAACCAACTCCACCGTGCGTTCACTATCCAAGAAGGAATCATGGGATGTCATTTGAGGATTCAGAGTTTGAGATACGTTGACAGTTAATAACAGAGATCTCTGGGATCTCTCTGGGCTATTT-ATCCNTGNTT--ATT-ATGTTTGTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGACGACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTGTGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAAACTGTGATGGATCAAAAAAAAAAGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA]

[+] EMBL BQ908543             [TTTCCCGGGTCTGACCCACGCGTCCCGACGCGTGGGTTGCAAGTCCAAATCTGAGCAAGCCATGGATCAGTGGTCCGAAATACCTTCGGATGTGGAATC TTCTAGAGATGGTAGAAG ATACACTTAGCGGTGAGGAGCTTAGCGACGCTGACAGTGCCCATATTGTT GTCATGGACAAATACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGCGGGATTCAGTAAGAAGAAAACCTGCATCGTTCGTACTGACTATAGCCACCGGCCGTCCACAACCAACTCCACCGTGCGTTCACTATCCAAGAAGGAATCATGGGATGTCATTTGAGGATTCAGAGTTTGAGATACGTTGACAGTTAATAACAGAGATCTCTGGGATCTCTCTGGGCTATTT ATCCNTGNTT  ATT ATGTTTGTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGACGACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTGTGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAAACTGTGATGGATCAAAAAAAAAA                                    ]
[+] EMBL BI802718             [                                                                                      ggaATGGGGAATCTTTCTAGAGATGGTAGAAGAATACATTGACCGGTGAGGAACTTAGCGACGCTGACAGTGCCCATATTGTTGGTCATGGACAAATACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGCGGGATTCAGTAAGAAGAAAACCTGCATC TTC TACTGACTATAGCCACCGGCC TCCACAACCAACTCCACC TGC TTCACTATCCAAGAAGGAATCATGGGATGTCA TTGAGGATTCAGAGTTTGAGATAC TTGACAGTTAATAACAGAGATCTCTGGGATCTCTCT GGCTATTTGATCC TGTTTTGATTGAT TGTTTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGACGACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTGTGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAAACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA]




>consensus_7092#0
TTTCCCGGGTCTGACCCACGCGTCCCGACGCGTGGGTTGCAAGTCCAAATCTGAGCAAGC
CATGGATCAGTGGTCCGAAATACCTTCGGATGTGGAATCTTCTAGAGATGGTAGAAGATA
CACTTAGCGGTGAGGAGCTTAGCGACGCTGACAGTGCCCATATTGTTGTCATGGACAAAT
ACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGC
GGGATTCAGTAAGAAGAAAACCTGCATCGTTCGTACTGACTATAGCCACCGGCCGTCCAC
AACCAACTCCACCGTGCGTTCACTATCCAAGAAGGAATCATGGGATGTCATTTGAGGATT
CAGAGTTTGAGATACGTTGACAGTTAATAACAGAGATCTCTGGGATCTCTCTGGGCTATT
TATCCNTGNTTATTATGTTTGTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGAC
GACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTG
TGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAA
ACTGTGATGGATCAAAAAAAAAAGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA

consensusID : consensus_7092#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [GGGGACTGTACCCTGCAGGTCGTGCCGGGATTTCCGGGTCGACCCACGCGTCCGCCCAAGCGGCCGCTTTCTGACTATACCACCGCCTCCACAACCAACTCCACCTGCGTCACTATCCCAGAAGGAATCATGGGATGTCATTGAGGATTCAGAGTTTGAGATACTTGACCGGTGATACACGAGATCTCTGGGATCTCTCTGGCTATTTA]

[+] EMBL BI807487             [GGGGACTGTACCCTGCAGGTCGTGCCGGGATTTCCGGGTCGACCCACGCGTCCGCCCAAGCGGCCGCTTTCTGACTATACCACCGCCTCCACAACCAACTCCACCTGCGTCACTATCCCAGAAGGAATCATGGGATGTCATTGAGGATTCAGAGTTTGAGATACTTGACCGGTGATACACGAGATCTCTGGGATCTCTCTGGCTATTTA]




>consensus_7092#1
GGGGACTGTACCCTGCAGGTCGTGCCGGGATTTCCGGGTCGACCCACGCGTCCGCCCAAG
CGGCCGCTTTCTGACTATACCACCGCCTCCACAACCAACTCCACCTGCGTCACTATCCCA
GAAGGAATCATGGGATGTCATTGAGGATTCAGAGTTTGAGATACTTGACCGGTGATACAC
GAGATCTCTGGGATCTCTCTGGCTATTTA

consensusID : consensus_7092#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 70
fasta sequence

                              [CCGTAAAGAAAACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA]

[+] EMBL BM419683             [CCGTAAAGAAAACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA]




>consensus_7092#2
CCGTAAAGAAAACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCAC
TGTACAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7092#0      TTTCCCGGGTCTGACCCACGCGTCCCGACGCGTGGGTTGCAAGTCCAAATCTGAGCAAGC 60
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      ------------------------------------------------------------
                                                                                  

consensus_7092#0      CATGGATCAGTGGTCCGAAATACCTTCGGATGTGGAATCTTCTAGAGATGGTAGAAGATA 120
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      ------------------------------------------------------------
                                                                                  

consensus_7092#0      CACTTAGCGGTGAGGAGCTTAGCGACGCTGACAGTGCCCATATTGTTGTCATGGACAAAT 180
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      ------------------------------------------------------------
                                                                                  

consensus_7092#0      ACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGC 240
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      ------------------------------------------------------------
                                                                                  

consensus_7092#0      GGGATTCAGTAAGAAGAAAACCTGCATCGTTCGTACTGACTATAGCCACCGGCCGTCCAC 300
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      ------------------------------------------------------------
                                                                                  

consensus_7092#0      AACCAACTCCACCGTGCGTTCACTATCCAAGAAGGAATCATGGGATGTCATTTGAGGATT 360
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      ------------------------------------------------------------
                                                                                  

consensus_7092#0      CAGAGTTTGAGATACGTTGACAGTTAATAACAGAGATCTCTGGGATCTCTCTGGGCTATT 420
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      ------------------------------------------------------------
                                                                                  

consensus_7092#0      TATCCNTGNTTATTATGTTTGTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGAC 480
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      ---------------------------------------------------------GGG 3
                                                                                  

consensus_7092#0      GACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTG 540
consensus_7092#2      ------------------------------------------------------------
consensus_7092#1      GACTGTACCCTGCAGGTCGTGCCGGGATTTCCGGGTCGACCCACGCGTCCGCCCAAGCGG 63
                                                                                  

consensus_7092#0      TGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAA 600
consensus_7092#2      -------------------------------------------------CCGTAAAGAAA 11
consensus_7092#1      CCGCTTTCTGACTATACCACCGCCTCCACAACCAACTCCACCTGCGTCACTATCCCAGAA 123
                                                                          *     **

consensus_7092#0      ACTGTGATGGATCAAAAAAAAAAGGTGAGACTATGGGTAAGTCTCCCACTG-TACAAAAA 659
consensus_7092#2      ACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCACTG-TACAAAAA 70
consensus_7092#1      GGAATCATGGGATGTCATTGAGGATTCAGAGTTTGAGATACTTGACCGGTGATACACGAG 183
                          * ****          *    * *** * ** *  * *   **  ** ****  * 

consensus_7092#0      --------------------------
consensus_7092#2      --------------------------
consensus_7092#1      ATCTCTGGGATCTCTCTGGCTATTTA 209