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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1177 fasta sequence
[TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTGGGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGG-AACATGTGGTTA-CCCTGAAA-TACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAAAAAAAAAAAAA]
[+] EMBL AK106167 [TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTGGGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGG AACATGTGGTTA CCCTGAAA TACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTT ]
[+] EMBL AU092918 [ cnGAAACCCATGGNACCATGTGGTTACCCCTGAAATTACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCNGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAA ]
[-] EMBL CA763095 [ GTTA CCCTGAAA TACAGGATGAATACGACTACTTCTTTACAGCACTATACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTTTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACATGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTTTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCCCCAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTCTCTGTAAATCTGTAATTTTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAAAAAAAAAAAAA]
consensusID : consensus_7096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1028 fasta sequence
[CGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATGTGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT]
[+] EMBL AK061032 [CGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATGTGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7096#0 TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGA 60
consensus_7096#1 -------------------------------CGGCCGCGCGGGAGGAGGAGGATGGAGGA 29
*****************************
consensus_7096#0 GAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTC 120
consensus_7096#1 GAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTC 89
************************************************************
consensus_7096#0 CGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTG 180
consensus_7096#1 CGG--------------------------------------------------------- 92
***
consensus_7096#0 GGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGAC 240
consensus_7096#1 ------GTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGAC 146
******************************************************
consensus_7096#0 CAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGAT 300
consensus_7096#1 CAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGAT 206
****** *****************************************************
consensus_7096#0 CCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCAC 360
consensus_7096#1 CCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCAC 266
************************************************************
consensus_7096#0 ATTCGACGGCAACAAG------------------------------------------AT 378
consensus_7096#1 ATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGAT 326
**************** **
consensus_7096#0 CTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTC 438
consensus_7096#1 CTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTC 386
************************************************************
consensus_7096#0 AACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATG 498
consensus_7096#1 AACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATG 446
************************************************************
consensus_7096#0 TGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAG 558
consensus_7096#1 TGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAG 506
************************************************************
consensus_7096#0 CAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAA 618
consensus_7096#1 CAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAA 566
************************************************************
consensus_7096#0 ATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTAT 678
consensus_7096#1 ATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTAT 626
************************************************************
consensus_7096#0 TGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCC 738
consensus_7096#1 TGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCC 686
************************************************************
consensus_7096#0 TCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGT 798
consensus_7096#1 TCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGT 746
************************************************************
consensus_7096#0 CACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCA 858
consensus_7096#1 CACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCA 806
************************************************************
consensus_7096#0 AGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACA 918
consensus_7096#1 AGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACA 866
************************************************************
consensus_7096#0 ATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCAC 978
consensus_7096#1 ATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCAC 926
************************************************************
consensus_7096#0 ACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAAC 1038
consensus_7096#1 ACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAAC 986
************************************************************
consensus_7096#0 TGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGT 1098
consensus_7096#1 TGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT------------------ 1028
******************************************
consensus_7096#0 AATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTT 1158
consensus_7096#1 ------------------------------------------------------------
consensus_7096#0 AACAAAAAAAAAAAAAAAA 1177
consensus_7096#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||