These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1177 fasta sequence [TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTGGGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGG-AACATGTGGTTA-CCCTGAAA-TACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAAAAAAAAAAAAA] [+] EMBL AK106167 [TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTGGGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGG AACATGTGGTTA CCCTGAAA TACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTT ] [+] EMBL AU092918 [ cnGAAACCCATGGNACCATGTGGTTACCCCTGAAATTACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCNGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAA ] [-] EMBL CA763095 [ GTTA CCCTGAAA TACAGGATGAATACGACTACTTCTTTACAGCACTATACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTTTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACATGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTTTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCCCCAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTCTCTGTAAATCTGTAATTTTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAAAAAAAAAAAAA] consensusID : consensus_7096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1028 fasta sequence [CGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATGTGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT] [+] EMBL AK061032 [CGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATGTGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7096#0 TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGA 60 consensus_7096#1 -------------------------------CGGCCGCGCGGGAGGAGGAGGATGGAGGA 29 ***************************** consensus_7096#0 GAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTC 120 consensus_7096#1 GAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTC 89 ************************************************************ consensus_7096#0 CGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTG 180 consensus_7096#1 CGG--------------------------------------------------------- 92 *** consensus_7096#0 GGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGAC 240 consensus_7096#1 ------GTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGAC 146 ****************************************************** consensus_7096#0 CAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGAT 300 consensus_7096#1 CAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGAT 206 ****** ***************************************************** consensus_7096#0 CCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCAC 360 consensus_7096#1 CCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCAC 266 ************************************************************ consensus_7096#0 ATTCGACGGCAACAAG------------------------------------------AT 378 consensus_7096#1 ATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGAT 326 **************** ** consensus_7096#0 CTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTC 438 consensus_7096#1 CTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTC 386 ************************************************************ consensus_7096#0 AACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATG 498 consensus_7096#1 AACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATG 446 ************************************************************ consensus_7096#0 TGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAG 558 consensus_7096#1 TGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAG 506 ************************************************************ consensus_7096#0 CAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAA 618 consensus_7096#1 CAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAA 566 ************************************************************ consensus_7096#0 ATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTAT 678 consensus_7096#1 ATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTAT 626 ************************************************************ consensus_7096#0 TGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCC 738 consensus_7096#1 TGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCC 686 ************************************************************ consensus_7096#0 TCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGT 798 consensus_7096#1 TCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGT 746 ************************************************************ consensus_7096#0 CACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCA 858 consensus_7096#1 CACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCA 806 ************************************************************ consensus_7096#0 AGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACA 918 consensus_7096#1 AGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACA 866 ************************************************************ consensus_7096#0 ATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCAC 978 consensus_7096#1 ATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCAC 926 ************************************************************ consensus_7096#0 ACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAAC 1038 consensus_7096#1 ACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAAC 986 ************************************************************ consensus_7096#0 TGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGT 1098 consensus_7096#1 TGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT------------------ 1028 ****************************************** consensus_7096#0 AATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTT 1158 consensus_7096#1 ------------------------------------------------------------ consensus_7096#0 AACAAAAAAAAAAAAAAAA 1177 consensus_7096#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||