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Oryza sativa
cluster # 7096 cluster # 7096       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7096#0 length = 1177 sequences # 3  
consensus_7096#1 length = 1028 sequences # 1  

consensusID : consensus_7096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1177
fasta sequence
                              [TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTGGGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGG-AACATGTGGTTA-CCCTGAAA-TACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAAAAAAAAAAAAA]

[+] EMBL AK106167             [TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTGGGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGG AACATGTGGTTA CCCTGAAA TACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTT                   ]
[+] EMBL AU092918             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cnGAAACCCATGGNACCATGTGGTTACCCCTGAAATTACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCNGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAA           ]
[-] EMBL CA763095             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTA CCCTGAAA TACAGGATGAATACGACTACTTCTTTACAGCACTATACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTTTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACATGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTTTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCCCCAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTCTCTGTAAATCTGTAATTTTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTTAACAAAAAAAAAAAAAAAA]


>consensus_7096#0 TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGA GAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTC CGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTG GGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGAC CAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGAT CCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCAC ATTCGACGGCAACAAGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTT GTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTG GGAAACTCATGGAACATGTGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTAC AGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTA TCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTT TGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTT CCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAA CCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTAC AGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCT CACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGC AAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTC AATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT CAGTTTCTGTAAATCTGTAATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCC AAATTCAAGCGCGCCGTTAACAAAAAAAAAAAAAAAA



consensusID : consensus_7096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1028
fasta sequence
                              [CGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATGTGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT]

[+] EMBL AK061032             [CGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGACCAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATGTGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT]


>consensus_7096#1 CGGCCGCGCGGGAGGAGGAGGATGGAGGAGAAGAGGCAGCGGCTGGTGATCTCTCTCTCG GCGCTCTGCCTCGCCGTCGCCGTGATGTCCGGGTTCGACTACTACGTGCTGGCGCTGCAG TGGCCGGGCACCGTCTGCCGCCAGACCAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGC TCACATCCGCTCAAATTCTTCACGATCCATGGGCTGTGGCCGCAGTACAGCTATGGGGGA TGGCCATCCTGCTGCAGGCCAACCACATTCGACGGCAACAAGGTGGCTGCCAACCACCCA TCTTATCTTCAGAATGGGATATTGATCTCGAGGTTGAAGACGATACTCGAGGAGTACTGG CCGTCCTTGTACTGCGGCTCTTTCTCAACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTG CATGAGTGGGAAACTCATGGAACATGTGGTTACCCTGAAATACAGGATGAATACGACTAC TTCTCTACAGCACTGTACCTTTACAGCAAATATAATGTGACGAAAGCTCTGAAGAAAGCA CATATTTATCCTAGAGGAGGCAGGAAATACTTAGTTGGTCATATCGTCTCTGCTATTGAA TTTTCCTTTGGGGCAATGCCATCTATTGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGG CTCTGCTTCCACAAGGATTATCAGCCTCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTT AGAAGAAACCATTGCCCTCGATACGTCACTTTACCATCATATAAACCACACGCATTTGGC AATTCTACAGAAGGAATCAGTAACCAAGTCAACGTTGAGCACCAATCATATCAGTAGATC TCACATCTCACTGTGAGTATTCTACAATATAAACACGGCTCTGATGACTCAGGAATGAGA TGTACAGCAAGAAACCCACTAGGCACACATACAGTAACGTCTGCATCTGTAATTCTATAA TGCAATTCAATTGATTATAAAGCAACTGAAAATCCCATGCTGAGTTATGCAGAACTTTTA CTGCATCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7096#0      TACAAGATCCGGGTGACAAGCCAAGAAAACGCGGCCGCGCGGGAGGAGGAGGATGGAGGA 60
consensus_7096#1      -------------------------------CGGCCGCGCGGGAGGAGGAGGATGGAGGA 29
                                                     *****************************

consensus_7096#0      GAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTC 120
consensus_7096#1      GAAGAGGCAGCGGCTGGTGATCTCTCTCTCGGCGCTCTGCCTCGCCGTCGCCGTGATGTC 89
                      ************************************************************

consensus_7096#0      CGGCGCGCTGCTGCCGCCGCGGGCGTCGGCGGCGGGAGGGGTCGGGAGGAAGCGGCGGTG 180
consensus_7096#1      CGG--------------------------------------------------------- 92
                      ***                                                         

consensus_7096#0      GGCCGGGTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGAC 240
consensus_7096#1      ------GTTCGACTACTACGTGCTGGCGCTGCAGTGGCCGGGCACCGTCTGCCGCCAGAC 146
                            ******************************************************

consensus_7096#0      CAGCCACTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGAT 300
consensus_7096#1      CAGCCATTGCTGCAGCTCCAATGGCTGCTGCCGCTCACATCCGCTCAAATTCTTCACGAT 206
                      ****** *****************************************************

consensus_7096#0      CCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCAC 360
consensus_7096#1      CCATGGGCTGTGGCCGCAGTACAGCTATGGGGGATGGCCATCCTGCTGCAGGCCAACCAC 266
                      ************************************************************

consensus_7096#0      ATTCGACGGCAACAAG------------------------------------------AT 378
consensus_7096#1      ATTCGACGGCAACAAGGTGGCTGCCAACCACCCATCTTATCTTCAGAATGGGATATTGAT 326
                      ****************                                          **

consensus_7096#0      CTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTC 438
consensus_7096#1      CTCGAGGTTGAAGACGATACTCGAGGAGTACTGGCCGTCCTTGTACTGCGGCTCTTTCTC 386
                      ************************************************************

consensus_7096#0      AACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATG 498
consensus_7096#1      AACCTGCTTTGGTGGGAAAAGGCCATTTTGGGTGCATGAGTGGGAAACTCATGGAACATG 446
                      ************************************************************

consensus_7096#0      TGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAG 558
consensus_7096#1      TGGTTACCCTGAAATACAGGATGAATACGACTACTTCTCTACAGCACTGTACCTTTACAG 506
                      ************************************************************

consensus_7096#0      CAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAA 618
consensus_7096#1      CAAATATAATGTGACGAAAGCTCTGAAGAAAGCACATATTTATCCTAGAGGAGGCAGGAA 566
                      ************************************************************

consensus_7096#0      ATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTAT 678
consensus_7096#1      ATACTTAGTTGGTCATATCGTCTCTGCTATTGAATTTTCCTTTGGGGCAATGCCATCTAT 626
                      ************************************************************

consensus_7096#0      TGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCC 738
consensus_7096#1      TGTGTGTAAAAACGGCTCAGTTCAAGAACTGAGGCTCTGCTTCCACAAGGATTATCAGCC 686
                      ************************************************************

consensus_7096#0      TCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGT 798
consensus_7096#1      TCGCGATTGCTTAGTTGAGGGTGAGAACTCTGTTAGAAGAAACCATTGCCCTCGATACGT 746
                      ************************************************************

consensus_7096#0      CACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCA 858
consensus_7096#1      CACTTTACCATCATATAAACCACACGCATTTGGCAATTCTACAGAAGGAATCAGTAACCA 806
                      ************************************************************

consensus_7096#0      AGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACA 918
consensus_7096#1      AGTCAACGTTGAGCACCAATCATATCAGTAGATCTCACATCTCACTGTGAGTATTCTACA 866
                      ************************************************************

consensus_7096#0      ATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCAC 978
consensus_7096#1      ATATAAACACGGCTCTGATGACTCAGGAATGAGATGTACAGCAAGAAACCCACTAGGCAC 926
                      ************************************************************

consensus_7096#0      ACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAAC 1038
consensus_7096#1      ACATACAGTAACGTCTGCATCTGTAATTCTATAATGCAATTCAATTGATTATAAAGCAAC 986
                      ************************************************************

consensus_7096#0      TGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCTCAGTTTCTGTAAATCTGT 1098
consensus_7096#1      TGAAAATCCCATGCTGAGTTATGCAGAACTTTTACTGCATCT------------------ 1028
                      ******************************************                  

consensus_7096#0      AATTCTGAATTGTCTGCAAATTTGCAGCATCCCGTCATTTCCAAATTCAAGCGCGCCGTT 1158
consensus_7096#1      ------------------------------------------------------------
                                                                                  

consensus_7096#0      AACAAAAAAAAAAAAAAAA 1177
consensus_7096#1      -------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)