These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCAAGGGGTAAAGGGTTTATATGTTTGGAAAAATTATATTATTGGAAATCATTTTGAGGAGCTAAACTAACGGGCCTTTTTAACAAGGGGATTTGTCCCCTTTCCTGATGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGGGTGGGCCCAAGGGGGAAGGGTGATTAAAAACTCCCATTTTCCCTGGGTGGGAATGGGATCAGGGGGCCTTTCAAAAAT] [+] EMBL CF291204 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCAAGGGGTAAAGGGTTTATATGTTTGGAAAAATTATATTATTGGAAATCATTTTGAGGAGCTAAACTAACGGGCCTTTTTAACAAGGGGATTTGTCCCCTTTCCTGATGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGGGTGGGCCCAAGGGGGAAGGGTGATTAAAAACTCCCATTTTCCCTGGGTGGGAATGGGATCAGGGGGCCTTTCAAAAAT] consensusID : consensus_710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGGATGAAAAAATTATTTTATTGGAAATCTTTTTGGGGAGCTAAACTTCCGGGCCTTTTTAACAAGGGAATTTGTCCCCTTCCCTGAGGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGAGGGGGCCCAA] [+] EMBL CF291643 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGGATGAAAAAATTATTTTATTGGAAATCTTTTTGGGGAGCTAAACTTCCGGGCCTTTTTAACAAGGGAATTTGTCCCCTTCCCTGAGGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGAGGGGGCCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_710#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCAAGGGGTAAAGGGTT 60 consensus_710#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------TT 49 **************************************** ** ** consensus_710#0 TATATGTTTGGAAAAATTATATTATTGGAAATCATTTTGAGGAGCTAAACTAACGGGCCT 120 consensus_710#1 TATTTGGATGAAAAAATTATTTTATTGGAAATCTTTTTGGGGAGCTAAACTTCCGGGCCT 109 *** ** ** ********* ************ ***** *********** ******* consensus_710#0 TTTTAACAAGGGGATTTGTCCCCTTTCCTGATGATTAACATTTAAATTTGTACCTCCCTG 180 consensus_710#1 TTTTAACAAGGGAATTTGTCCCCTTCCCTGAGGATTAACATTTAAATTTGTACCTCCCTG 169 ************ ************ ***** **************************** consensus_710#0 GAATTAAGGGGGTGGGCCCAAGGGGGAAGGGTGATTAAAAACTCCCATTTTCCCTGGGTG 240 consensus_710#1 GAATTAAGGGAGGGGGCCCAA--------------------------------------- 190 ********** * ******** consensus_710#0 GGAATGGGATCAGGGGGCCTTTCAAAAAT 269 consensus_710#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||