cluster # 712

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 712 cluster # 712 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_712#0 length = 262 sequences # 1

consensus_712#1 length = 225 sequences # 1

consensusID : consensus_712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [CCGGGAGCTTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCGGCGGGCGGCGTAGGAGGAACACGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGGGAGGAGGAGGACCCGCACATGTTTCACTACCTATTTACTGGGCTTTTCCTTTCTACTCCATAATGGATCCTTTTCTGGCTGCTTTATTGAGACACGAGTTTGTACATGAACATGATTGCCCTCGCCTTCTGTTCACCTCCCC]

[+] EMBL CB634703             [CCGGGAGCTTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCGGCGGGCGGCGTAGGAGGAACACGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGGGAGGAGGAGGACCCGCACATGTTTCACTACCTATTTACTGGGCTTTTCCTTTCTACTCCATAATGGATCCTTTTCTGGCTGCTTTATTGAGACACGAGTTTGTACATGAACATGATTGCCCTCGCCTTCTGTTCACCTCCCC]




>consensus_712#0
CCGGGAGCTTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCG
GCGGGCGGCGTAGGAGGAACACGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGG
GAGGAGGAGGACCCGCACATGTTTCACTACCTATTTACTGGGCTTTTCCTTTCTACTCCA
TAATGGATCCTTTTCTGGCTGCTTTATTGAGACACGAGTTTGTACATGAACATGATTGCC
CTCGCCTTCTGTTCACCTCCCC

consensusID : consensus_712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [CCGGGCACATTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCGGCGGGCGGCGTAGGAGGAAGAGGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGGGAGGAGGAGGAGGGGCGATGGATGCGAGCGCCGGTCTGGTCGCCTGCTCCCTCTACCGCAACGAGCTCCTCTTCCTCCGCCGCTACTGCGATCCCGGGCCGAAG]

[+] EMBL CB635018             [CCGGGCACATTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCGGCGGGCGGCGTAGGAGGAAGAGGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGGGAGGAGGAGGAGGGGCGATGGATGCGAGCGCCGGTCTGGTCGCCTGCTCCCTCTACCGCAACGAGCTCCTCTTCCTCCGCCGCTACTGCGATCCCGGGCCGAAG]




>consensus_712#1
CCGGGCACATTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTC
GGCGGGCGGCGTAGGAGGAAGAGGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGG
GGAGGAGGAGGAGGGGCGATGGATGCGAGCGCCGGTCTGGTCGCCTGCTCCCTCTACCGC
AACGAGCTCCTCTTCCTCCGCCGCTACTGCGATCCCGGGCCGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_712#0      CCGGGAGC-TTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTC 59
consensus_712#1      CCGGGCACATTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTC 60
                     *****  * ***************************************************

consensus_712#0      GGCGGGCGGCGTAGGAGGAACACGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGG 119
consensus_712#1      GGCGGGCGGCGTAGGAGGAAGAGGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGG 120
                     ******************** * *************************************

consensus_712#0      GGAGGAGGAGGACCCGC-ACATGTTTCACTACCTATTTACTGGGCTTTTCCTTTCTACTC 178
consensus_712#1      GGAGGAGGAGGAGGGGCGATGGATGCGAGCGCCGGTCTGGTCGCCTGCTCCCT-CTACCG 179
                     ************   ** *    *   *   **  * *  * * **  *** * ****  

consensus_712#0      CATAATGGATCCTTTTCTGGCTGCTTTATTGAGACACGAGTTTGTACATGAACATGATTG 238
consensus_712#1      CA-ACGAGCTCCTCTTCCTCCGCCGCTACTGCGATCCCGGGCCGAAG------------- 225
                     ** *   * **** ***   *  *  ** ** **  *  *   * *              

consensus_712#0      CCCTCGCCTTCTGTTCACCTCCCC 262
consensus_712#1      ------------------------