These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [CCGGGAGCTTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCGGCGGGCGGCGTAGGAGGAACACGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGGGAGGAGGAGGACCCGCACATGTTTCACTACCTATTTACTGGGCTTTTCCTTTCTACTCCATAATGGATCCTTTTCTGGCTGCTTTATTGAGACACGAGTTTGTACATGAACATGATTGCCCTCGCCTTCTGTTCACCTCCCC] [+] EMBL CB634703 [CCGGGAGCTTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCGGCGGGCGGCGTAGGAGGAACACGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGGGAGGAGGAGGACCCGCACATGTTTCACTACCTATTTACTGGGCTTTTCCTTTCTACTCCATAATGGATCCTTTTCTGGCTGCTTTATTGAGACACGAGTTTGTACATGAACATGATTGCCCTCGCCTTCTGTTCACCTCCCC] consensusID : consensus_712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [CCGGGCACATTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCGGCGGGCGGCGTAGGAGGAAGAGGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGGGAGGAGGAGGAGGGGCGATGGATGCGAGCGCCGGTCTGGTCGCCTGCTCCCTCTACCGCAACGAGCTCCTCTTCCTCCGCCGCTACTGCGATCCCGGGCCGAAG] [+] EMBL CB635018 [CCGGGCACATTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTCGGCGGGCGGCGTAGGAGGAAGAGGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGGGGAGGAGGAGGAGGGGCGATGGATGCGAGCGCCGGTCTGGTCGCCTGCTCCCTCTACCGCAACGAGCTCCTCTTCCTCCGCCGCTACTGCGATCCCGGGCCGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_712#0 CCGGGAGC-TTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTC 59 consensus_712#1 CCGGGCACATTCGGAGGGAGAGAGAGAGATGGAGATCTGGTTGTAGGGCGAGGAGCGGTC 60 ***** * *************************************************** consensus_712#0 GGCGGGCGGCGTAGGAGGAACACGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGG 119 consensus_712#1 GGCGGGCGGCGTAGGAGGAAGAGGGCGAGGGTGAGGGTGTGCGTGGTTGATTAGCGGGGG 120 ******************** * ************************************* consensus_712#0 GGAGGAGGAGGACCCGC-ACATGTTTCACTACCTATTTACTGGGCTTTTCCTTTCTACTC 178 consensus_712#1 GGAGGAGGAGGAGGGGCGATGGATGCGAGCGCCGGTCTGGTCGCCTGCTCCCT-CTACCG 179 ************ ** * * * ** * * * * ** *** * **** consensus_712#0 CATAATGGATCCTTTTCTGGCTGCTTTATTGAGACACGAGTTTGTACATGAACATGATTG 238 consensus_712#1 CA-ACGAGCTCCTCTTCCTCCGCCGCTACTGCGATCCCGGGCCGAAG------------- 225 ** * * **** *** * * ** ** ** * * * * consensus_712#0 CCCTCGCCTTCTGTTCACCTCCCC 262 consensus_712#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||