These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1116 fasta sequence [AATACGCCCACTGACGTGTGGGCCATACCCTCCTCCCCCTGTTCAAAACTTCAAATCGTCGCGTTTTTTCTTCAAACCGTGGCTCTCTCTCTCTCTGCAATAAGAAGTCGTCTTCCACCTCGAGCTCCTACTCTCCCCGGTGATCTCTCGCTTCGATTCGATTCTCTCGTGCAACTGCAAGACACAAGGCCAACTTGATTAGGAGGAGGAGGAAGAAGAAGAAGCGGTGATTGCTAGCTAGCTAGCGAGCTCCGTCGACTCTTGCCTGCAGCCATGATTACGGCGGCGGTGGCAGCCGTGGTGGAGTCCGCGTCGCCATCGCCATCGCCGGCGAGGAAGCGGTGCCGGCTGGGCGGGCCGGTCGTCGCGAACGGCGAGGGTGGTGCTGCTAGTAATACTACCGCCAGTAGCGAGTTCCAGCTGCGGCACTGGCGCCCGGCGGCCGCAGGCAAGCGGGCGGGGCTGGGGATGCGGAGGCGGTGGGCGCCGCCGGAGATAGAGATCCCCGGCGGCGGGAGCGGAGTCGGAGTCGGAGCGCGAGGGTACACCAGCCTCCGGGACATCCTCTCGTCGCCGAAGTACGCCGCGTCGAGCAAGTCCAGCTCCCCCGCCGACGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGACGTGCACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTCCAGCTGACGCCGTCGGCGAGGGACGCCGCCGACGCCGCCGGCAGGAGGCGGCGGCGCAGCCGCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCGGCTTCGTCGGCGCGCTCTTCGGACGGTGACTGACCTCGCCGTCTCCGGCGAGACACGCCCGCACGTCTCTTGACCTTTTGACCGATTTTTCTTGCC-TTTTTTTTAATTTCTGTTTTTTTACAGTGTATTATTTAGAGCAGAAATTGGATTTTTCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAATAGTTTTGTAGGATTTTAGGTGTGAGACAGAGAGATGATGGCAACAATTCAAAAAAAGAAATGATTTGCTTGCTAACACCTGATCGGTTAGCTTGAGGGCAATGCATTTGTGATAC] [+] EMBL AK108381 [AATACGCCCACTGACGTGTGGGCCATACCCTCCTCCCCCTGTTCAAAACTTCAAATCGTCGCGTTTTTTCTTCAAACCGTGGCTCTCTCTCTCTCTGCAATAAGAAGTCGTCTTCCACCTCGAGCTCCTACTCTCCCCGGTGATCTCTCGCTTCGATTCGATTCTCTCGTGCAACTGCAAGACACAAGGCCAACTTGATTAGGAGGAGGAGGAAGAAGAAGAAGCGGTGATTGCTAGCTAGCTAGCGAGCTCCGTCGACTCTTGCCTGCAGCCATGATTACGGCGGCGGTGGCAGCCGTGGTGGAGTCCGCGTCGCCATCGCCATCGCCGGCGAGGAAGCGGTGCCGGCTGGGCGGGCCGGTCGTCGCGAACGGCGAGGGTGGTGCTGCTAGTAATACTACCGCCAGTAGCGAGTTCCAGCTGCGGCACTGGCGCCCGGCGGCCGCAGGCAAGCGGGCGGGGCTGGGGATGCGGAGGCGGTGGGCGCCGCCGGAGATAGAGATCCCCGGCGGCGGGAGCGGAGTCGGAGTCGGAGCGCGAGGGTACACCAGCCTCCGGGACATCCTCTCGTCGCCGAAGTACGCCGCGTCGAGCAAGTCCAGCTCCCCCGCCGACGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGACGTGCACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTCCAGCTGACGCCGTCGGCGAGGGACGCCGCCGACGCCGCCGGCAGGAGGCGGCGGCGCAGCCGCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCGGCTTCGTCGGCGCGCTCTTCGGACGGTGACTGACCTCGCCGTCTCCGGCGAGACACGCCCGCACGTCTCTTGACCTTTTGACCGATTTTTCTTGCC TTTTTTTTAATTTCTGTTTTTTTACAGTGTATTATTTAGAGCAGAAATTGGATTTTTCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAATAGTTTTGTAGGATTTTAGGTGTGAGACAGAGAGATGATGGCAACAATTCAAAAAAAGAAATGATTTGCTTGCTAACACCTGATCGGTTAGCTTGAGGGCAATGCATTTGTGATAC] [+] EMBL AU161978 [ CACGCCCGCACGTCTCTTGACCTTTTGACCGATTTTNCTTGCCTTTTTTTTTAATTTCTGTTTTTTTACAGTGTATTATTTAGAGCAGAAATTGGATTTTNCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAATAGTTTTGTAGGATTTTAGGTGTGAGACAGAGAGATGATGGCAACAATTCAAAAAAAGAAATGATTTGCTTGCTAACACCTGATTGGTTAGCTTGAGGGCAAaaa ] consensusID : consensus_7124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1014 fasta sequence [TCGTGGTTTCTCTCTCCTCGCGATGCCAGCTGCCGCCGCCGCCGCCGCCACCGGGATGACGGAGTCGTCGTCGCCGTCGTCGTCTCCCTCCCCGCCGAGGAAGTTCCGGCGTGTGCGGTCGCCGCTGGCGAACGGCGGCGCGGCGGGTGACTTCGAGCTGCGGCACTGGCGCACGCCGCCGAAGCGGGCGCGTTCATCGGCGGCGCCGCCGTGGGCGCCGCCGGAGATCGAGATCCCCTGCGGCGGAGGAGAGGCGGCGGGGAGGGGAGGAGGGTACACGAGCCTCCGGGACATCCTGATGTCGCCGGGGTACGCGGCGTCGTGCTCGCCCGCGGCGTGCGGCGGCGGCGGAGGCGGCGGCAGCTGCGGCGACATACACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTGCAGATGACGCCGTCGGCGAGGGACGACCCCGGGCGCCGCCACCGCCGGCGCTGGCGCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCAGCTTCATCGGCGC-GCTCTTCCGGCCATGATCGACGACGACTTCTCCCCCTCCGCCTCGGGNGACATGCATGATCGATCGACGGCGACCGTCGGTTACTTGCTAATCNCACACTTGATTATTCCTCTCCCATTCTTCTCTCATTTTCTAGTCTATGTGTGATTAGACTATTTTTCTTTCTTAATTACCAACTTTAGAGGATTTGCTTGCGTTGGAATTTTTGTAAATAACTTGCTAGGATTAGTCTCAAAGAGGAGGAGATGATACGCAACACAAGAGAGATGTTTGATTGCACTGGTAACAAGAACCAGATTAGTTCAGCCTGAGCTCAACTTAATATTTCTTGATTTTTTTTCTCTCTCTGTTTTTTTTGAGTGATGAGCTCATGATTGATCCAATAATGTCCAAGGATATGAGAACANCCAACCATGTGAAGAAGTAGGAGAAGAAAAGGTTAAAATGATTGGGGANAAATAAAGAGAAACGATTTAATTTCTAAAA] [+] EMBL CA756346 [TCGTGGTTTCTCTCTCCTCGCGATGCCAGCTGCCGCCGCCGCCGCCGCCACCGGGATGACGGAGTCGTCGTCGCCGTCGTCGTCTCCCTCCCCGCCGAGGAAGTTCCGGCGTGTGCGGTCGCCGCTGGCGAACGGCGGCGCGGCGGGTGACTTCGAGCTGCGGCACTGGCGCACGCCGCCGAAGCGGGCGCGTTCATCGGCGGCGCCGCCGTGGGCGCCGCCGGAGATCGAGATCCCCTGCGGCGGAGGAGAGGCGGCGGGGAGGGGAGGAGGGTACACGAGCCTCCGGGACATCCTGATGTCGCCGGGGTACGCGGCGTCGTGCTCGCCCGCGGCGTGCGGCGGCGGCGGAGGCGGCGGCAGCTGCGGCGACATACACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTGCAGATGACGCCGTCGGCGAGGGACGACCCCGGGCGCCGCCACCGCCGGCGCTGGCGCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCAGCTTCATCGGCGC GCTCTTCCGGCCATGATCGACGACGACTTCTCCCCCTCCGCCTCGGGNGACATGCATGATCGATCGA ] [+] EMBL BM420264 [ CATCGGCGCGGCTCTTCCGGCCATGATCGACGACGACTTCTCCCCCTCCGCCTCCGGCGACATGCATGATCGATCGACGGCGACCGTCGGTTACTTGCTAATCNCACACTTGATTATTCCTCTCCCATTCTTCTCTCATTTTCTAGTCTATGTGTGATTAGACTATTTTTCTTTCTTAATTACCAACTTTAGAGGATTTGCTTGCGTTGGAATTTTTGTAAATAACTTGCTAGGATTAGTCTCAAAGAGGAGGAGATGATACGCAACACAAGAGAGATGTTTGATTGCACTGGTAACAAGAACCAGATTAGTTCAGCCTGAGCTCAACTTAATATTTCTTGATTTTTTTTCTCTCTCTGTTTTTTTTGAGTGATGAGCTCATGATTGATCCAATAATGTCCAAGGATATGAGAACANCCAACCATGTGAAGAAGTAGGAGAAGAAAAGGTTAAAATGATTGGGGANAAATAAAGAGAAACGATTTAATTTCTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7124#0 AATACGCCCACTGACGTGTGGGCCATACCCTCCTCCCCCTGTTCAAAACTTCAAATCGTC 60 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 GCGTTTTTTCTTCAAACCGTGGCTCTCTCTCTCTCTGCAATAAGAAGTCGTCTTCCACCT 120 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 CGAGCTCCTACTCTCCCCGGTGATCTCTCGCTTCGATTCGATTCTCTCGTGCAACTGCAA 180 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 GACACAAGGCCAACTTGATTAGGAGGAGGAGGAAGAAGAAGAAGCGGTGATTGCTAGCTA 240 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 GCTAGCGAGCTCCGTCGACTCTTGCCTGCAGCCATGATTACGGCGGCGGTGGCAGCCGTG 300 consensus_7124#1 --TCGTGGTTTCTCTCTCCTCGCGATGCCAGCTGCCGCCGCCGCCGCCGCCACCGGGATG 58 * * * ** ** *** * **** * ** ** * * * ** consensus_7124#0 GTGGAGTCCGCGTCGCCATCGCCATCGCCGGCGAGGAAGCGGTGCCGGCTGGGCGGGCCG 360 consensus_7124#1 ACGGAGTCGTCGTCGCCGTCGTCGTCTCCCTCCCCGCCGAGGAAGTTCCGGCGTGTGC-G 117 ****** ******* *** * ** ** * * * ** * * * * ** * consensus_7124#0 GTCGTCGCGAACGGCGAGGGTGGTGCTGCTAGTAATACTACCGCCAGTAGCGAGTTCCAG 420 consensus_7124#1 GTCGCCGCTGGCGA--ACGGCGGCGCGGCGGGTGAC------------------TTCGAG 157 **** *** ** * ** ** ** ** ** * *** ** consensus_7124#0 CTGCGGCACTGGCGCCCGGCGGCCGCAGGCAAGCGGGCGGGGCTGGGGATGCGGAGGCGG 480 consensus_7124#1 CTGCGGCACTGGCGCACG----CCGCCG--AAGCGGGCGCGTTCATCGGCGGCGCCGCCG 211 *************** ** **** * ********* * * * * ** * consensus_7124#0 TGGGCGCCGCCGGAGATAGAGATCCCCGGCGGCGGGAGCGGAGTCGGAGTCGGAGCGCGA 540 consensus_7124#1 TGGGCGCCGCCGGAGATCGAGATCCCCTGCGGCGGAGGAGAGGCGGCGGGGAGGGGAGGA 271 ***************** ********* ******* * * * * * * * ** consensus_7124#0 GGGTACACCAGCCTCCGGGACATCCTCTCGTCGCCGAAGTACGCCGCGTCGAGCAAGTCC 600 consensus_7124#1 GGGTACACGAGCCTCCGGGACATCCTGATGTCGCCGGGGTACGCGGCGTCGTGC------ 325 ******** ***************** ******* ****** ****** ** consensus_7124#0 AGCTCCCCCGCCGACGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGAC 660 consensus_7124#1 -------TCGCCCGCGGCGT-----GCGGCGGCGGCGGAGGCGGCGGCAGCTGCGGCGAC 373 **** *** * ************* ********* ** * ** *** consensus_7124#0 GTGCACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTCCAGCTGACG 720 consensus_7124#1 ATACACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTGCAGATGACG 433 * *********************************************** *** ***** consensus_7124#0 CCGTCGGCGAGGGACGCCGCCGACGCCGCCGGCAGGAGGCGGCGGCGCAGCCGCGGCCCG 780 consensus_7124#1 CCGTCGGCGAGGGACGACCCCG--GGCGCCGCCA----CCGCCGGCGCTGGCGCGGCCCG 487 **************** * *** * ***** ** ** ****** * ********* consensus_7124#0 CTCTGCCGCCTCCTCCTCGGCTGCCTCGGCTTCGTCGGCGCGCTCTTCGGACGGTGACTG 840 consensus_7124#1 CTCTGCCGCCTCCTCCTCGGCTGCCTCAGCTTCATCGGCGCGCTCTTCCGGCCATGATCG 547 *************************** ***** ************** * * *** * consensus_7124#0 AC------CTCGCCGTCTCCGGC----GAGACACGCCCGCACGTCTCTTGAC--CTTTTG 888 consensus_7124#1 ACGACGACTTCTCCCCCTCCGCCTCGGGNGACATGCATGATCGATCGACGGCGACCGTCG 607 ** ** ** ***** * * **** ** * ** * * * * * consensus_7124#0 ACCGATTTTT---CTTGCCTTT---TTTTTAATTTCTGTTTTTTTACAGTGTATTATTTA 942 consensus_7124#1 GTTACTTGCTAATCNCACACTTGATTATTCCTCTCCCATTCTTCTCTCATTTTCTAGTCT 667 ** * * * ** * ** * * ** ** * * * ** * consensus_7124#0 GAGCAGAAATTGG--ATTTTTCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAA 1000 consensus_7124#1 ATGTGTGATTAGACTATTTTTCTTTCTTAATTACCAACTTTAGAGGATTTGCTTGCGTTG 727 * * * * ******* * * * ** * ** *** * * consensus_7124#0 TAGTTTT-----GTAGGATTTTAGGTGTGA----GACAGAGAGATGATGGCA-ACAATTC 1050 consensus_7124#1 GAATTTTTGTAAATAACTTGCTAGGATTAGTCTCAAAGAGGAGGAGATGATACGCAACAC 787 * **** ** * **** * * *** **** * *** * consensus_7124#0 AAAAAAAGAAATGATTTGC-TTGCTAACA----CCTGATCGGTT-AGCTTGAGGGCAATG 1104 consensus_7124#1 AAGAGAGATGTTTGATTGCACTGGTAACAAGAACCAGATTAGTTCAGCCTGAGCTCAACT 847 ** * * * **** ** ***** ** *** *** *** **** *** consensus_7124#0 CA----TTTGTGATAC-------------------------------------------- 1116 consensus_7124#1 TAATATTTCTTGATTTTTTTTCTCTCTCTGTTTTTTTTGAGTGATGAGCTCATGATTGAT 907 * ** **** consensus_7124#0 ------------------------------------------------------------ consensus_7124#1 CCAATAATGTCCAAGGATATGAGAACANCCAACCATGTGAAGAAGTAGGAGAAGAAAAGG 967 consensus_7124#0 ----------------------------------------------- consensus_7124#1 TTAAAATGATTGGGGANAAATAAAGAGAAACGATTTAATTTCTAAAA 1014 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||