These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 484 fasta sequence [TTTTACAGGCATAAACGGATCATGAGATATTGAATCGGATCAATCTATAGTTATATACTGTATACTTATGCGTCGAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTTTGACAGCTTACACTAAACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTTACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTGTATCGGTCTTGATAACTCTGGTATTATAAGAACCACAGGAGCCGCATTTATGGTACAACCAGTGAAATCGAGACCTCCCTTTTCTTTCACAATCATTACAAAGTATATCCTGACACCGATCACGGTATTCCTCAGGAAGCTCTTCAGCAGCCAGCAAGGCGTCCAACATGCCAAAGTACACCG] [+] EMBL CF316434 [TTTTACAGGCATAAACGGATCATGAGATATTGAATCGGATCAATCTATAGTTATATACTGTATACTTATGCGTCAAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTTTGACAGCTTACACTACACCTATTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTTACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTGTATCGGTCTTGATAACTCTGGTATTATAAGAACCACAGGAGCCGCATTTATGGTACAACCAGTGAAATCGAGACCTCCCTTTTCTTTCACAATCATTACAAAGTATATCCTGACACCGATCACGGTATTCCTCAGGAAGCTCTTCAGCAGCCAGCAAGGCGTCCAACATGCCAAAGTACACCG] [+] EMBL BI305395 [ CTATAGTTATATACTGTATACTTATGCGTCGAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTTTGACAGCTTACACTAAACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTTACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTGTATCGGTCTTGATAACTCT ] [+] EMBL CB965237 [ CTATAGTTATATACTGTATACTTATGCGTCGAAGGGCTTCAGGGGGCAGAAAGGAAGGTGCATGTAGCGTCCATTTTGACAGCTTACACTAGACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTTACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAGAACAATCTGCTGTATCGGTCTT ] consensusID : consensus_7136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTGAACCGGATCAACCTATAGTTATATACTGTATACTTATGCGTCGAGGGGCTTCAGGGGGCAAAAAGGAAGGGGCATGTAGCGCCCATCTTGACGGTTTACTCTAAACCTAGTAAATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATCCCCCCCCCCTACCCGATGTATTGGAAGTCTATATTTACATATGCCAAAAACGAAAAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTTGTCTCGCCCTCT] [+] EMBL CA761292 [TTTTTTTTTTTTTTTTTTTTTTTTTTTGAACCGGATCAACCTATAGTTATATACTGTATACTTATGCGTCGAGGGGCTTCAGGGGGCAAAAAGGAAGGGGCATGTAGCGCCCATCTTGACGGTTTACTCTAAACCTAGTAAATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATCCCCCCCCCCTACCCGATGTATTGGAAGTCTATATTTACATATGCCAAAAACGAAAAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTTGTCTCGCCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7136#0 TTTTACAGGCATAAACGGATCATGAGATATTGAATCGGATCAATCTATAGTTATATACTG 60 consensus_7136#1 TTTTTTTTTTTTTTTTTTTTTTT----TTTTGAACCGGATCAACCTATAGTTATATACTG 56 **** * * * * ***** ******** **************** consensus_7136#0 TATACTTATGCGTCGAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTT 120 consensus_7136#1 TATACTTATGCGTCGAGGGGCTTCAGGGGGCAAAAAGGAAGGGGCATGTAGCGCCCATCT 116 **************** ************************* ********** **** * consensus_7136#0 TGACAGCTTACACTAAACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAA 180 consensus_7136#1 TGACGGTTTACTCTAAACCTAGTAAATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAA 176 **** * **** ************ *********************************** consensus_7136#0 GGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTT 240 consensus_7136#1 GGGATGAAAAATATGGTAGCTATCCCCCCCCCCTACCCGATGTATTGGAAGTCTATATTT 236 *********************** * * * **** ********** ************ consensus_7136#0 ACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCT 300 consensus_7136#1 ACATATGCCAAAAACGAAAAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCT 296 ****************** ***************************************** consensus_7136#0 -GTATCGGTCTTGATAACTCTGGTATTATAAGAACCACAGGAGCCGCATTTATGGTACAA 359 consensus_7136#1 TGTCTCGCCCTCT----------------------------------------------- 309 ** *** ** consensus_7136#0 CCAGTGAAATCGAGACCTCCCTTTTCTTTCACAATCATTACAAAGTATATCCTGACACCG 419 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 ATCACGGTATTCCTCAGGAAGCTCTTCAGCAGCCAGCAAGGCGTCCAACATGCCAAAGTA 479 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 CACCG 484 consensus_7136#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||