These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [NNNNTNNNNNNNTTGTGCTTGTNNNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATGCCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNNNNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTTTTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT] [+] EMBL CF195844 [NNNNTNNNNNNNTTGTGCTTGTNNNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATGCCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNNNNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTTTTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT] consensusID : consensus_7138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 381 fasta sequence [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNANNNAATANNGNTATAATNNNN] [+] EMBL CF195708 [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNANNNAATANNGNTATAATNNNN] [+] EMBL CF195670 [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCAGGAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNGTATAGNNNNCATTCACTCCCAANNAAAat ] [+] EMBL CF195684 [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGNNNNTNGNNNNNATAGTTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7138#0 -------------------------------------NNNNTNNNNNNNTTGTGCTTGTN 23 consensus_7138#1 GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTC 60 * ********** consensus_7138#0 NNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAG 83 consensus_7138#1 ATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAG 120 ********************************************************** consensus_7138#0 CATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCA 143 consensus_7138#1 CATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCA 180 ************************************************************ consensus_7138#0 CAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTG 203 consensus_7138#1 CAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTG 240 ************************************************************ consensus_7138#0 GTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATG 263 consensus_7138#1 GTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATG 300 ************ *** ************************ *** ************ consensus_7138#0 CCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNN 323 consensus_7138#1 CCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNA 360 ************************* ***** ** *********** * * * consensus_7138#0 NNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTT 383 consensus_7138#1 NNNAA-TANNGNTATAATNNNN-------------------------------------- 381 ***** ** * *** ** *** consensus_7138#0 TTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT 428 consensus_7138#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||