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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7138 cluster # 7138       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7138#0 length = 428 sequences # 1  
consensus_7138#1 length = 381 sequences # 3  

consensusID : consensus_7138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence
                              [NNNNTNNNNNNNTTGTGCTTGTNNNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATGCCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNNNNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTTTTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT]

[+] EMBL CF195844             [NNNNTNNNNNNNTTGTGCTTGTNNNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATGCCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNNNNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTTTTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT]


>consensus_7138#0 NNNNTNNNNNNNTTGTGCTTGTNNNTACCTCTAACCATATCATGTTATTTAATTTATATC ACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTT ACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTAC TTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGT GGGAATNNNNNAAATATAAAATGCCATATATAATATCCTCTATATTTTNNTTCATAGAGA NNNTAGTTTCCATTNANTCCNNNNNNAAATATGGGTATNATCNNNNGNANTAATCTGGAA GCNNNNNTGAATATGGATATTTTTTGCTGGATANNNNTACAAATACTATGACGTTGGNNN NNNNGCTT



consensusID : consensus_7138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 381
fasta sequence
                              [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNANNNAATANNGNTATAATNNNN]

[+] EMBL CF195708             [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNANNNAATANNGNTATAATNNNN]
[+] EMBL CF195670             [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCAGGAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNGTATAGNNNNCATTCACTCCCAANNAAAat              ]
[+] EMBL CF195684             [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGNNNNTNGNNNNNATAGTTTC                                  ]


>consensus_7138#1 GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTC ATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAG CATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCA CAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTG GTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATG CCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNA NNNAATANNGNTATAATNNNN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7138#0      -------------------------------------NNNNTNNNNNNNTTGTGCTTGTN 23
consensus_7138#1      GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTC 60
                                                               *       ********** 

consensus_7138#0      NNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAG 83
consensus_7138#1      ATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAG 120
                        **********************************************************

consensus_7138#0      CATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCA 143
consensus_7138#1      CATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCA 180
                      ************************************************************

consensus_7138#0      CAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTG 203
consensus_7138#1      CAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTG 240
                      ************************************************************

consensus_7138#0      GTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATG 263
consensus_7138#1      GTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATG 300
                      ************  ***  ************************ *** ************

consensus_7138#0      CCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNN 323
consensus_7138#1      CCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNA 360
                      *************************  *****     ** *********** * *   * 

consensus_7138#0      NNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTT 383
consensus_7138#1      NNNAA-TANNGNTATAATNNNN-------------------------------------- 381
                      ***** **  * *** ** ***                                      

consensus_7138#0      TTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT 428
consensus_7138#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)