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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2308 fasta sequence
[ATCGATGCGATTTCAGCAGCCGTCGTCGTTGATTCGGATTCGGGGAGTAACCGCGCAAGAGCAGCGACGATGAGGTTCGGTTTCCGTCTCCGATTTCCCTTGGGGTTCCATCCCCTTCAAATTTAACGCGACCCTTCACTCCCCGTCGCATCGCATCTTGGCTGACTCGTCCCGAAAATCTTGAGCGACCGAGTTACCGGCGGCGGAGATGGTGGTGGCTGACAATGGCAAGTGGGCGCTGGAGAAGGCTCGGGCGCTGCAAGATTTGGAGGAGGAATTCAACCAACAGATTGCAAGGATTCTCAGCTGCTACCAGCTACCTGACCACATCAGGCTGGATCTCCATGAGCAGCACCGCAATGACTACAAGGTGCCTGACGATCTCCGGCTCAAGTTCGTGAATGCCGTTTTCGAGGGGAAATCCGGGATGCTTGATCAAGACGAGGAACTCAGGGTTCAGGCTCGGAAGGAATCCGAGAAGTTTTGGGTGGAGGCGGCGGGGGCGGCGAAGAAGGCGCAAGCACTACAAGACATGGAAGAGAGAAACAGGCAATTGTTCTTTAAGCATTATCCTGGCGTGCAAGACATGCCTGACCACATTAGGGAGTACTGCTTCAGGAAATTCATGGAAGATGCCAGGGATGAGGTAGAGGTCAGATTCGGGATACGTAATCACGAAATGCGACTCAGGATCCGAGCTTGGGAGGAATCGCAGCAGTTTCTGATCAAGACAATGGCCGATGGGCGGGCAGCCAAGAAAGTGCAGACCTTGCAAGATGAGGAGAAGAGATATGTTCAGGGTGTTAAGAAAACTTTTGACAGCGAAAACATATCTGAGTACTTCCAACAGGCCTTCCTCCAGCAAGGCCTACTTGATAATATCCGGCTGCTTTTCATAGATGATATAGAGGAGAAATTCAATATGCCTGATGACGAAGAGGAACCTAAGGGTTACATTTCGGAGGATTACAACAGGTTGAAGGCGCAGGCCTTACAAGATTTGGAGTACAAATTCAACCAACAGACTGCAAGGATTCTCAAGCGTTATGACCTACCCGAGCACATCAGGCTGGATCTCCAGGAGCAACACTACAACAACTACAAGGTGCCTGACAATCTCCGGATCAAGTTCATAAATGCTGTTTTCAATGGAAATCCCCGGATACTTGATCACAAGAGGGAGCTCAAGGTCCAGGCTCGCAAAGAAGCAGAAAAGTTTTGGATCGAGGCGGCGGCGACAGCGAAGAA-GGCACAAGCACTACAAGATTTGGAAGAGAGATACAAGCAACAATTTATTAAGCCTAGTTATGACAGGGAAGACATATCTGAGCACATGCAGGAGTATTTCCTCAGGGAAAGAAAGATAACTGACAAGGCCTATCTCGAGTACAAGAATAATGTAGAGGATAAATTCGCGATACGTAACCACGAAATGCAATTGAAGTTTCTAGCCTGGGAGAAAACACAGCAGTTTCGGATTAAGATGATGGCTGATGAGCGGGCGGCGAAGAAGGTGAAGGCCCTGCAAGATATGGAGGAGAGATATGTTCAAGATTATATCAACAAGGTTGAAAGACTAGATGTACCTGACTACATCAAGCAGGGCGTTATCCAGGAATACAAGGTACCTGACGGTACCCGACTACGTTACATAAATTATATCGAGGAGAAATTCAGGATGCTTGATGACCAAGAGGAACGTAAGGTTCACATTTGGGAGAATTTCAAAAAGTTGAAGATCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGATCTTGTTCTCCGGCTTCCTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGGCGACTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAGCTACGATAATGAAAGCTCGAAGACCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAATAATGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGTGCTATTTAACAGATCGGTTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAACTCGTTCCATCCCTATGTGGAAAAACAAGTTCTTTTTTATTTGGAAGGTAAACAAGTTCTTTGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAATTTTAGACTTCAGTGTATTTCTATATGCTATGAGCCTGTTAATGACATACTATCAGACTGATGAAAGATGTTTTGATAGAGCAGAAAATTTAAAAAAAAAAAA]
[+] EMBL AK100556 [ATCGATGCGATTTCAGCAGCCGTCGTCGTTGATTCGGATTCGGGGAGTAACCGCGCAAGAGCAGCGACGATGAGGTTCGGTTTCCGTCTCCGATTTCCCTTGGGGTTCCATCCCCTTCAAATTTAACGCGACCCTTCACTCCCCGTCGCATCGCATCTTGGCTGACTCGTCCCGAAAATCTTGAGCGACCGAGTTACCGGCGGCGGAGATGGTGGTGGCTGACAATGGCAAGTGGGCGCTGGAGAAGGCTCGGGCGCTGCAAGATTTGGAGGAGGAATTCAACCAACAGATTGCAAGGATTCTCAGCTGCTACCAGCTACCTGACCACATCAGGCTGGATCTCCATGAGCAGCACCGCAATGACTACAAGGTGCCTGACGATCTCCGGCTCAAGTTCGTGAATGCCGTTTTCGAGGGGAAATCCGGGATGCTTGATCAAGACGAGGAACTCAGGGTTCAGGCTCGGAAGGAATCCGAGAAGTTTTGGGTGGAGGCGGCGGGGGCGGCGAAGAAGGCGCAAGCACTACAAGACATGGAAGAGAGAAACAGGCAATTGTTCTTTAAGCATTATCCTGGCGTGCAAGACATGCCTGACCACATTAGGGAGTACTGCTTCAGGAAATTCATGGAAGATGCCAGGGATGAGGTAGAGGTCAGATTCGGGATACGTAATCACGAAATGCGACTCAGGATCCGAGCTTGGGAGGAATCGCAGCAGTTTCTGATCAAGACAATGGCCGATGGGCGGGCAGCCAAGAAAGTGCAGACCTTGCAAGATGAGGAGAAGAGATATGTTCAGGGTGTTAAGAAAACTTTTGACAGCGAAAACATATCTGAGTACTTCCAACAGGCCTTCCTCCAGCAAGGCCTACTTGATAATATCCGGCTGCTTTTCATAGATGATATAGAGGAGAAATTCAATATGCCTGATGACGAAGAGGAACCTAAGGGTTACATTTCGGAGGATTACAACAGGTTGAAGGCGCAGGCCTTACAAGATTTGGAGTACAAATTCAACCAACAGACTGCAAGGATTCTCAAGCGTTATGACCTACCCGAGCACATCAGGCTGGATCTCCAGGAGCAACACTACAACAACTACAAGGTGCCTGACAATCTCCGGATCAAGTTCATAAATGCTGTTTTCAATGGAAATCCCCGGATACTTGATCACAAGAGGGAGCTCAAGGTCCAGGCTCGCAAAGAAGCAGAAAAGTTTTGGATCGAGGCGGCGGCGACAGCGAAGAA GGCACAAGCACTACAAGATTTGGAAGAGAGATACAAGCAACAATTTATTAAGCCTAGTTATGACAGGGAAGACATATCTGAGCACATGCAGGAGTATTTCCTCAGGGAAAGAAAGATAACTGACAAGGCCTATCTCGAGTACAAGAATAATGTAGAGGATAAATTCGCGATACGTAACCACGAAATGCAATTGAAGTTTCTAGCCTGGGAGAAAACACAGCAGTTTCGGATTAAGATGATGGCTGATGAGCGGGCGGCGAAGAAGGTGAAGGCCCTGCAAGATATGGAGGAGAGATATGTTCAAGATTATATCAACAAGGTTGAAAGACTAGATGTACCTGACTACATCAAGCAGGGCGTTATCCAGGAATACAAGGTACCTGACGGTACCCGACTACGTTACATAAATTATATCGAGGAGAAATTCAGGATGCTTGATGACCAAGAGGAACGTAAGGTTCACATTTGGGAGAATTTCAAAAAGTTGAAGATCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGATCTTGTTCTCCGGCTTCCTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGGCGACTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAGCTACGATAATGAAAGCTCGAAGACCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAATAATGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGTGCTATTTAACAGATCGGTTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAACTCGTTCCATCCCTATGTGGAAAAACAAGTTCTTTTTTATTTGGAAGGTAAACAAGTTCTTTGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAATTTTAGACTTCAGTGTATTTCTATATGCTATGAGCCTGTTAATGACATACTATCAGACTGATGAAAGATGTT ]
[+] EMBL OSC18391 [ AATATGCCTGATGACGAAGAGGAACCTAAGGGTTACATTTCGGAGGATTACAACAGGTTGAAGGCGCAGGCCTTACAAGATTTGGAGTACAAATTCAACCAACAGACTGCAAGGATTCTCAAGCGTTATGACCTACCCGAGCACATCAGGCTGGATCTCCAGGAGCAACACTACAACAACTACAAGGTGCCTGACAATCTCCGGATCAAGTTCATAAATGCTGTTTTCAATGGAAATCCCCGGATACTTGATCACAAGAGGGAGCTCAAGGTCCAGGCTCGCAAAGAAGCAGAAAAGTTTTGGATCGAGGCGGCGGCGACAGC AAGAAGGGCACAAGCACTACAAGATTTGGAAGAGAG ]
[-] EMBL CA761099 [ AATACAAGGTACCTGACGGTACCCGACTACGTTACATAAATTATATCGAGGAGAAATTCAGGATGCTTGATGACCAAGAGGAACGTAAGGTTCACATTTGGGAGAATTTCAAAAAGTTGAAGATCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGATCTTGTTCTCCGGCTTCCTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGGCGGCTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAGCTACGATAATGAAAGCTCGAAGACCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAATAATGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGTGCTATTTAACGGATCGGTTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAACTCGTTCCATCCCTATGTGGAAACACAAGTTCTTTTTTATTTGGAAGGTAAACAAGTTCTTTGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAATTTTAGACTTCAGTGTATTTCTATATGCTATGAGCCTGTTAATGACATACTATCAGACTGATGAAAGATGTTTTGATAGAGCAGAAAATTTAAAAAAAAAAAA]
consensusID : consensus_7146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[CGTTACTCGTAAAGCNCCCTTTCTCCCCCTCCCCCTTTNNAAGATGAGGAACCTCCACAACCTCACAAAAACTTTTGTTCCCGAACCCCCCTTTGGGTCGCGGTATCGATAATCTTGCATAGTAGGAGAGCACACGGGGCATACGGCGGAGCAGAATGCTCAAGATTATATCAACAAGGTTGAAAGACTAGATGCCCCTGACTACATCAAGCACGGCCGTTATCCCAGGATTCCAG]
[+] EMBL CA765824 [CGTTACTCGTAAAGCNCCCTTTCTCCCCCTCCCCCTTTNNAAGATGAGGAACCTCCACAACCTCACAAAAACTTTTGTTCCCGAACCCCCCTTTGGGTCGCGGTATCGATAATCTTGCATAGTAGGAGAGCACACGGGGCATACGGCGGAGCAGAATGCTCAAGATTATATCAACAAGGTTGAAAGACTAGATGCCCCTGACTACATCAAGCACGGCCGTTATCCCAGGATTCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7146#0 ATCGATGCGATTTCAGCAGCCGTCGTCGTTGATTCGGATTCGGGGAGTAACCGCGCAAGA 60
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GCAGCGACGATGAGGTTCGGTTTCCGTCTCCGATTTCCCTTGGGGTTCCATCCCCTTCAA 120
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 ATTTAACGCGACCCTTCACTCCCCGTCGCATCGCATCTTGGCTGACTCGTCCCGAAAATC 180
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TTGAGCGACCGAGTTACCGGCGGCGGAGATGGTGGTGGCTGACAATGGCAAGTGGGCGCT 240
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GGAGAAGGCTCGGGCGCTGCAAGATTTGGAGGAGGAATTCAACCAACAGATTGCAAGGAT 300
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TCTCAGCTGCTACCAGCTACCTGACCACATCAGGCTGGATCTCCATGAGCAGCACCGCAA 360
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TGACTACAAGGTGCCTGACGATCTCCGGCTCAAGTTCGTGAATGCCGTTTTCGAGGGGAA 420
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 ATCCGGGATGCTTGATCAAGACGAGGAACTCAGGGTTCAGGCTCGGAAGGAATCCGAGAA 480
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GTTTTGGGTGGAGGCGGCGGGGGCGGCGAAGAAGGCGCAAGCACTACAAGACATGGAAGA 540
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GAGAAACAGGCAATTGTTCTTTAAGCATTATCCTGGCGTGCAAGACATGCCTGACCACAT 600
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TAGGGAGTACTGCTTCAGGAAATTCATGGAAGATGCCAGGGATGAGGTAGAGGTCAGATT 660
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 CGGGATACGTAATCACGAAATGCGACTCAGGATCCGAGCTTGGGAGGAATCGCAGCAGTT 720
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TCTGATCAAGACAATGGCCGATGGGCGGGCAGCCAAGAAAGTGCAGACCTTGCAAGATGA 780
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GGAGAAGAGATATGTTCAGGGTGTTAAGAAAACTTTTGACAGCGAAAACATATCTGAGTA 840
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 CTTCCAACAGGCCTTCCTCCAGCAAGGCCTACTTGATAATATCCGGCTGCTTTTCATAGA 900
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TGATATAGAGGAGAAATTCAATATGCCTGATGACGAAGAGGAACCTAAGGGTTACATTTC 960
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GGAGGATTACAACAGGTTGAAGGCGCAGGCCTTACAAGATTTGGAGTACAAATTCAACCA 1020
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 ACAGACTGCAAGGATTCTCAAGCGTTATGACCTACCCGAGCACATCAGGCTGGATCTCCA 1080
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GGAGCAACACTACAACAACTACAAGGTGCCTGACAATCTCCGGATCAAGTTCATAAATGC 1140
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TGTTTTCAATGGAAATCCCCGGATACTTGATCACAAGAGGGAGCTCAAGGTCCAGGCTCG 1200
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 CAAAGAAGCAGAAAAGTTTTGGATCGAGGCGGCGGCGACAGCGAAGAAGGCACAAGCACT 1260
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 ACAAGATTTGGAAGAGAGATACAAGCAACAATTTATTAAGCCTAGTTATGACAGGGAAGA 1320
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 CATATCTGAGCACATGCAGGAGTATTTCCTCAGGGAAAGAAAGATAACTGACAAGGCCTA 1380
consensus_7146#1 ------------------------------------------CGTTACTCGTAAAGCNC- 17
* *** ** **
consensus_7146#0 TCTCGAGTACAAGAATAATGTAGAGGATAAATTCGCGATACGTAACCACGAAATGCAATT 1440
consensus_7146#1 CCTTTCTCCCCCTCCCCCTTTNNAAGATGAG----------GAACCTCCACAACCTCACA 67
** * * * * *** * * * * * ** *
consensus_7146#0 GAAGTTTCTAGCCTGGGAGAAAACACAGCAGTTTCGGATTAAGATGATGGCTGATGAGCG 1500
consensus_7146#1 AAAACTTTTGTTCCCG-----AACCCCCC---TTTGGGTCGCGGTA----TCGATAATCT 115
** ** * * * *** * * ** ** * * * *** * *
consensus_7146#0 GGCGGCGAAGAAGGTGAAGGCCCTGCAAGATATGGAGGAGAGATATGTTCAAGATTATAT 1560
consensus_7146#1 TGCATAGTAGGAG----AGCACACGGGGCATACGGCGGAGCAGAATGCTCAAGATTATAT 171
** * ** ** ** * * *** ** **** *** ************
consensus_7146#0 CAACAAGGTTGAAAGACTAGATGTACCTGACTACATCAAGCAGGGC-GTTATCCAGGAAT 1619
consensus_7146#1 CAACAAGGTTGAAAGACTAGATGCCCCTGACTACATCAAGCACGGCCGTTATCCCAGGAT 231
*********************** ***************** *** ******* * **
consensus_7146#0 ACAAGGTACCTGACGGTACCCGACTACGTTACATAAATTATATCGAGGAGAAATTCAGGA 1679
consensus_7146#1 TCCAG------------------------------------------------------- 236
* **
consensus_7146#0 TGCTTGATGACCAAGAGGAACGTAAGGTTCACATTTGGGAGAATTTCAAAAAGTTGAAGA 1739
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGA 1799
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TCTTGTTCTCCGGCTTCCTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGG 1859
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 CGACTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAGCTACGATAATGAAAGCTCGAAGA 1919
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 CCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAATAA 1979
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGT 2039
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GCTATTTAACAGATCGGTTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAAC 2099
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TCGTTCCATCCCTATGTGGAAAAACAAGTTCTTTTTTATTTGGAAGGTAAACAAGTTCTT 2159
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 TGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAATTTTAGACTTCAGT 2219
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GTATTTCTATATGCTATGAGCCTGTTAATGACATACTATCAGACTGATGAAAGATGTTTT 2279
consensus_7146#1 ------------------------------------------------------------
consensus_7146#0 GATAGAGCAGAAAATTTAAAAAAAAAAAA 2308
consensus_7146#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||