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Oryza sativa
cluster # 7155 cluster # 7155       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7155#0 length = 1459 sequences # 4  

consensusID : consensus_7155#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1459
fasta sequence
                              [GCGGACGCGTGGGCGGACGCGTGGCGGACGCGTGGGCGGACGCGTGGGCCAGAAGTTGTCATCGCTATCGCTGTTCCGGATGGGTTCTTTTCCGCCTGGTGGAGGTTCCGCTAGAATAAAGACCCTCTAAATGCCCTGGGCGAGTGCCGCTTCGCTCGTCTTATCAACTAATAGCGGTAGGTTAACTATTTAATATCT-CTAGCGTATTC-GCTCGTACCCTTGATGGTCTGGATTCATCATTTCTT-TTGATC-AATAGTTAGTAAAAANAAAGGAAAAGGGTAAATTAAGTAGGGCGGTCCACAACAAGGCTACTGCTACAGTAGGGCCACAACAAGACTACTGCTACAGTACGAAACGAAAGAAATGAAAAGCGGAGAGCAGAGTATAGCTAGGATCAATCCCCTCCCTGTTCTAGAAAGAAAGGCCGAACAAGCGTTGGAATGGTCAAAGGGACTGCTTCGGTACATACATTAGGAAGGAGGCT-AATACAAAACAAGAGTCTACGCTCGC-TTTGTTCTGCTGCCAATGGACTAAAGACTTTCCCAACCCATATAACACTGTCTTTGACCGACTGGCCTAGTAGGTAAAAGAGGAGTAAGAATAGCAATGCCTCCACTCCAAATAATGTGAGTTCGGTTTGGCCTGGCAGGAGCTTTTCTTGGTTGGCCGGGACGAGAGGATCACAGGCCGAAATCCATCAAAGAATCTTCGATCTGATAGAAAAAAGGTATACAGACATACATAAGTAAGTAAGTCCCGCTCAGGTCAAATCAAGGGAAAATGGTATAAAGCCTCTGCATTAACTTGACATGAAAGTGAAAGGGTCCGATCCTGACTCCCCAAAAGCAGTAAGTAACGGTCACTAAGCCAATGATGCAGGAAATGCACGCTAGGAGAAGTTTGGCATGCTTAGTTAGTGGGAGCACTTGAGGAAGACTAAAGCTTGAAAGGGGCTTCACTTCTGGGACTTCTTGGCTAAGAGGATGCTTGCTATAAGAAGTATAAGTAGGCGGGTAACGTTTCATTTCTTCCATAGAATCTCAATATGGCGAGAATGAAGCAGGGCAATTAAAGCTTGAATTCAATTCAATAGTCAAGGTAGAGTAGAAAGGGGGGGCGTGCTACTTAACGCAACTGCACTTGGCTAAGAAAATAGGATAGAGCAGAGAGAGCCTAATCTCCCGCTTGGTCATTGAGCAGTGAGCCGAGGTGCGATGAGCGGTTGAGTCACGCACTACAAGATGGCTGAAGGTATCTGCCTGCCCCTATCTCGTCTGCTTCTACTTTGCGGAGACTTGCTTTGACGAGTAAACATGTACCAGTGGTATCGCTTTCCGTTTTGAGTTATTCCCGGTAATTAAGCACCTTCTATACGCCTTGTTCTTGGAAAGGCAAAACCATCANAGCGTTGATTAAAGAAAAGTAACTCCCATCCTAATAGACCTCGNATCTCCCCTTG]

[+] EMBL BI795145             [GCGGACGCGTGGGCGGACGCGTGGCGGACGCGTGGGCGGACGCGTGGGCCAGAAGTTGTCATCGCTATCGCTGTTCCGGATGGGTTCTTTTCCGCCTGGTGGAGGTTCCGCTAGAATAAAGACCCTCTAAATGCCCTGGGCGAGTGCCGCTTCGCTCGTCTTATCAACTAATAGCGGTAGGTTAACTATTTAATATCTGCTAGCGTATTCGGCTCGTACCCTTGATGGTCTGGATTCATCATTTCTTGTTGATC AATAGTTAGTAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CF306335             [                                                                                                                                                               CTTATCAACTAATAGCGCTAGGTTAACTATTTAATATCT CTAGCGTATTC GCTCGTACCCTTGATGGTCTGGATTCATCATTTCTT TTGATCAAATAGTTAGTAAAGANAAAGGAAAAGGGTAAATTAAGTAGGGCGGTCCACAACAAGGCTACTGCTACAGTAGGGCCACAACAAGACTACTGCTACAGTACGAAACGAAAGAAATGAAAAGCGGAGAGCAGAGTATAGCTAGGATCAATCCCCTCCCTGTTCTAGAAAGAAAGGCCGAACAAGCGTTGGAATGGTCAAAGGGACTGCTTCGGTACATACATTAGGAAGGAGGCTAAATACAAAACAAGAGTCTACGCTCGCTTTTGTTCTGCTGCCAATGGACTAAAGACTTTCCCAACCCATATAACACTGTCTTTGACCGACTGGCCTAGTAGGTAAAAGAGGAGTAAGAATAGCAATGCCTCCACTCCAAATAATGTGAGTTCGGTTTGGCCTGGCAGGAGCTTTTCTTGGTTGGCCGGGACGAGAGGATCACAGGCCGAAATCCATCAAAGAATCTTCGATCTGATAGAAAAAAGGTATACAGACATACATAAGTAAGTAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA766172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cgagacaAGGGGGGAGGCT AATACAAAACAAGAGTCTACGCTCGC TTTGTTCTGCTGCCAATGGACTAAAGACTTTCCCAACCCATATAACACTGTCTTTGACCGACTGGCCTAGTAGGTAAAAGAGGAGTAAGAATAGCAATGCCTCCACTCCAAATAATGTGAGTTCGGTTTGGCCTGGCAGGAGCTTTTCTTGGTTGGCCGGGACGAGAGGATCACAGGCCGAAATCCATCAAAGAATCTTCGATCTGATAGAAAAAAGGTATACAGACATACATAAGTAAGTAAGTCCCGCTCAGGTCAAATCAAGGGAAAATGGTATAAAGCCTCTGCATTAACTTGACATGAAAGTGAAAGGGTCCGATCCTGACTCCCCAAAAGCAGTAAGTAACGGTCACTAAGCCAATGATGCAGGAAATGCACGCTAGGAGAAGTTTGGCATGCTTAGTTAGTGGGAGCACTTGAGGAAGACTAAAGCTTGAAAGGGGCTTCACTTCTGGGACTTCTTGGCTAAGAGGATGCTTGCTATAAGAAGTATAAGTAGGCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA760416             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAAGGGGAAATGGTATAAAGCCTCTGCATTAACTTGACATGAAAGTGAAAGGGTCCGATCCTGACTCCCCAAAAGCAGTAAGTAACGGTCACTAAGCCAATGATGCAGGAAATGCACGCTAGGAGAAGTTTGGCATGCTCAGTTAGTGGGAGCACTTGAGGAAGACTAAAGCTTGAAAGGGGCTTCACTTCTGGGACTTCTTGGCTAAGAGGATGCTTGCTATAAGAAGTATAAGTAGGCGGGTAACGTTTCATTTCTTCCATAGAATCTCAATATGGCGAGAATGAAGCAGGGCAATTAAAGCTTGAATTCAATTCAATAGTCAAGGTAGAGTAGAAAGGGGGGGCGTGCTACTTAACGCAACTGCACTTGGCTAAGAAAATAGGATAGAGCAGAGAGAGCCTAATCTCCCGCTTGGTCATTGAGCAGTGAGCCGAGGTGCGATGAGCGGTTGAGTCACGCACTACAAGATGGCTGAAGGTATCTGCCTGCCCCTATCTCGTCTGCTTCTACTTTGCGGAGACTTGCTTTGACGAGTAAACATGTACCAGTGGTATCGCTTTCCGTTTTGAGTTATTCCCGGTAATTAAGCACCTTCTATACGCCTTGTTCTTGGAAAGGCAAAACCATCANAGCGTTGATTAAAGAAAAGTAACTCCCATCCTAATAGACCTCGNATCTCCCCTTG]


>consensus_7155#0 GCGGACGCGTGGGCGGACGCGTGGCGGACGCGTGGGCGGACGCGTGGGCCAGAAGTTGTC ATCGCTATCGCTGTTCCGGATGGGTTCTTTTCCGCCTGGTGGAGGTTCCGCTAGAATAAA GACCCTCTAAATGCCCTGGGCGAGTGCCGCTTCGCTCGTCTTATCAACTAATAGCGGTAG GTTAACTATTTAATATCTCTAGCGTATTCGCTCGTACCCTTGATGGTCTGGATTCATCAT TTCTTTTGATCAATAGTTAGTAAAAANAAAGGAAAAGGGTAAATTAAGTAGGGCGGTCCA CAACAAGGCTACTGCTACAGTAGGGCCACAACAAGACTACTGCTACAGTACGAAACGAAA GAAATGAAAAGCGGAGAGCAGAGTATAGCTAGGATCAATCCCCTCCCTGTTCTAGAAAGA AAGGCCGAACAAGCGTTGGAATGGTCAAAGGGACTGCTTCGGTACATACATTAGGAAGGA GGCTAATACAAAACAAGAGTCTACGCTCGCTTTGTTCTGCTGCCAATGGACTAAAGACTT TCCCAACCCATATAACACTGTCTTTGACCGACTGGCCTAGTAGGTAAAAGAGGAGTAAGA ATAGCAATGCCTCCACTCCAAATAATGTGAGTTCGGTTTGGCCTGGCAGGAGCTTTTCTT GGTTGGCCGGGACGAGAGGATCACAGGCCGAAATCCATCAAAGAATCTTCGATCTGATAG AAAAAAGGTATACAGACATACATAAGTAAGTAAGTCCCGCTCAGGTCAAATCAAGGGAAA ATGGTATAAAGCCTCTGCATTAACTTGACATGAAAGTGAAAGGGTCCGATCCTGACTCCC CAAAAGCAGTAAGTAACGGTCACTAAGCCAATGATGCAGGAAATGCACGCTAGGAGAAGT TTGGCATGCTTAGTTAGTGGGAGCACTTGAGGAAGACTAAAGCTTGAAAGGGGCTTCACT TCTGGGACTTCTTGGCTAAGAGGATGCTTGCTATAAGAAGTATAAGTAGGCGGGTAACGT TTCATTTCTTCCATAGAATCTCAATATGGCGAGAATGAAGCAGGGCAATTAAAGCTTGAA TTCAATTCAATAGTCAAGGTAGAGTAGAAAGGGGGGGCGTGCTACTTAACGCAACTGCAC TTGGCTAAGAAAATAGGATAGAGCAGAGAGAGCCTAATCTCCCGCTTGGTCATTGAGCAG TGAGCCGAGGTGCGATGAGCGGTTGAGTCACGCACTACAAGATGGCTGAAGGTATCTGCC TGCCCCTATCTCGTCTGCTTCTACTTTGCGGAGACTTGCTTTGACGAGTAAACATGTACC AGTGGTATCGCTTTCCGTTTTGAGTTATTCCCGGTAATTAAGCACCTTCTATACGCCTTG TTCTTGGAAAGGCAAAACCATCANAGCGTTGATTAAAGAAAAGTAACTCCCATCCTAATA GACCTCGNATCTCCCCTTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)