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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[TTTTTTTTTTTTTGGAAGATGATGTCTATTGGCGTGAGGGGTTACTCAAAGCCATAATGGCACACCACTATATCTGCATCGTGATATCGTCGCTTTCCATGCGTATGAAAGTGCAGAAGAGAGAATAATCGAGAAGTCCGAGAAACCACGCCGTTGACCATCCGTATCCCATGTTGCCAGCCCACAAATCCGAACCACCTCTGCAACGTTTAGATGTAGGTCTCGTAAGGTACGGGTGTGATGTTCTCTGGCTTGTTGTCCTTGAGGCTGACGACACGGTCGCCACGGGGCATGGCAGGCTGGCGCTTCATCTGCTGGGGCTCGCCAGTCTCCTTGGCCTTTTGTTGCTTGGCGAAGTTGAGCTTGACGCGCTTGAGGAAGTCCTCTCGTGAGCGCGAGTGGCGGACGTGCTCGATGCGGACGTTGATGCGCTTCTCGAGGTATCGGTTGCCGACCTGCTTCTGGAGGATGACACCAACAGCGGACTTGGTGACGTTGTAGACGATACCGGTCTTGCCGTGGTAGACCTTGTAGGGCATACCCTTCTGGACCGCACCGTTGGCAACGACATCGACGATATCGCCGACCTTGTACTGCTTGAGGTAGGTCGAGAGAGGGATCATACCCTTCTTCTTGAAGTCCCTCGAGAATGCATAGCGCGTACCCGCGCGA]
[+] EMBL CA761969 [TTTTTTTTTTTTTGGAAGATGATGTCTATTGGCGTGAGGGGTTACTCAAAGCCATAATGGCACACCACTATATCTGCATCGTGATATCGTCGCTTTCCATGCGTATGAAAGTGCAGAAGAGAGAATAATCGAGAAGTCCGAGAAACCACGCCGTTGACCATCCGTATCCCATGTTGCCAGCCCACAAATCCGAACCACCTCTGCAACGTTTAGATGTAGGTCTCGTAAGGTACGGGTGTGATGTTCTCTGGCTTGTTGTCCTTGAGGCTGACGACACGGTCGCCACGGGGCATGGCAGGCTGGCGCTTCATCTGCTGGGGCTCGCCAGTCTCCTTGGCCTTTTGTTGCTTGGCGAAGTTGAGCTTGACGCGCTTGAGGAAGTCCTCTCGTGAGCGCGAGTGGCGGACGTGCTCGATGCGGACGTTGATGCGCTTCTCGAGGTATCGGTTGCCGACCTGCTTCTGGAGGATGACACCAACAGCGGACTTGGTGACGTTGTAGACGATACCGGTCTTGCCGTGGTAGACCTTGTAGGGCATACCCTTCTGGACCGCACCGTTGGCAACGACATCGACGATATCGCCGACCTTGTACTGCTTGAGGTAGGTCGAGAGAGGGATCATACCCTTCTTCTTGAAGTCCCTCGAGAATGCATAGCGCGTACCCGCGCGA]
consensusID : consensus_7168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[TTTTTTTTTTTTTGAAAATGGAGGATGATTTTTCATTGGCGTGAGGGGTTTTGCTCAAAGCCATATTTGGCACACCACTGCTATATCTGCCGTATCATATCGCCGCTTTCCATGCAGGTGAACGTGCAGAAAAGAGAATAATCGAGATCCGAGAAACCACGCCGTGAACCATCCGTAACCCAATTTGCCATTCGCGCGCAAAGTCCTTTCTCCCCGCTCAAATCGTTGTCTCGTAGGCAACAGGTACAATGTTCTCTGGCTTGACCTCCTTCAGGCTGACGACCGCTGAGCCCCTGGGCTGTGCGGGGATGCGCTTCAACTGCTGAGGCTCACCAGTCTCCTTAGCCTTCTGCTGCTTGGCGAAGTTGGCCTTGACGCGCTTGAGGAAGTCCCCACGGGAACGGGAGTGGCGGACGTGCTCGATGCGGACGTTGATACGCTTCTCGAGGTAGCGGTTGCCGACCTGCTTCTGGAGGATGACACCGACGGAGGACTTGGTGACGTTGTAGACAATACCGGTCTTACCGTGGTAGACCTTGTAGGGCATACCCTTCTGGACGGCACCGTTTGCTACGACATCGACGATATCACCGACCTTGTACTGCTTGAGGTAGGTCGAGAGAGGGATCATACCCTTCTTCTTGAAGTCGCGGAGAAGGCATA]
[+] EMBL CA763490 [TTTTTTTTTTTTTGAAAATGGAGGATGATTTTTCATTGGCGTGAGGGGTTTTGCTCAAAGCCATATTTGGCACACCACTGCTATATCTGCCGTATCATATCGCCGCTTTCCATGCAGGTGAACGTGCAGAAAAGAGAATAATCGAGATCCGAGAAACCACGCCGTGAACCATCCGTAACCCAATTTGCCATTCGCGCGCAAAGTCCTTTCTCCCCGCTCAAATCGTTGTCTCGTAGGCAACAGGTACAATGTTCTCTGGCTTGACCTCCTTCAGGCTGACGACCGCTGAGCCCCTGGGCTGTGCGGGGATGCGCTTCAACTGCTGAGGCTCACCAGTCTCCTTAGCCTTCTGCTGCTTGGCGAAGTTGGCCTTGACGCGCTTGAGGAAGTCCCCACGGGAACGGGAGTGGCGGACGTGCTCGATGCGGACGTTGATACGCTTCTCGAGGTAGCGGTTGCCGACCTGCTTCTGGAGGATGACACCGACGGAGGACTTGGTGACGTTGTAGACAATACCGGTCTTACCGTGGTAGACCTTGTAGGGCATACCCTTCTGGACGGCACCGTTTGCTACGACATCGACGATATCACCGACCTTGTACTGCTTGAGGTAGGTCGAGAGAGGGATCATACCCTTCTTCTTGAAGTCGCGGAGAAGGCATA]
consensusID : consensus_7168#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 661 fasta sequence
[ACGATGTCTTTTTTCTGGTCCTATGCCGTACAGACATCAAAAGGCAAGCCCTTGCCATGCAGAATTCTTTCCCATCCGGACGCAATACCCCAAATAAATAGAAGCAAGCACCACCAACCCCCGCAATATCTTTTCTTTTAGATCGTGGTCTCGTAGGCAAGAGGGGTAACGGTCATGGGGGGGTTCTCGGAGAGCGACAGTGTGTGGGCGCCACGAGGTCCAAGGGGCTGACGCTTGACCTGGACAACGGTTCCGGTGGCCTTGGCCTCACGCTTGGCCTCGGCGTTAGCCTTGACTCGCTTGAGGAAGTCCTCACGAGATCGGGACTGCGAGATGTGCTCGATTCGGACGTTGATTCGCTTCTCGATGTATCGGTGCTTGACCTGCTTGTAGATGATGACACCGACAGCGGACTTGGTGACGTTGTAGATGACACCAGTCTTTCCGTGGTAGACCTTGAAGGGCATACCCTTCTGGACGGCACCGTTCGCCTTAATGTCGACGATATCTCCAACGCGGTACTGTCGGAGGTAGGTGTTCAGGGCAATCATACCCTTCTTGCGGAAGTCCCGGCTGAAGGCATAGCGGGTGCCCGCTCTCTTTCCGTATGAGTGACCCATCTCGAATCGTGTGATCTGCCGGTCGCGGGAGGGTTGGGGTT]
[-] EMBL AK059120 [ACGATGTCTTTTTTCTGGTCCTATGCCGTACAGACATCAAAAGGCAAGCCCTTGCCATGCAGAATTCTTTCCCATCCGGACGCAATACCCCAAATAAATAGAAGCAAGCACCACCAACCCCCGCAATATCTTTTCTTTTAGATCGTGGTCTCGTAGGCAAGAGGGGTAACGGTCATGGGGGGGTTCTCGGAGAGCGACAGTGTGTGGGCGCCACGAGGTCCAAGGGGCTGACGCTTGACCTGGACAACGGTTCCGGTGGCCTTGGCCTCACGCTTGGCCTCGGCGTTAGCCTTGACTCGCTTGAGGAAGTCCTCACGAGATCGGGACTGCGAGATGTGCTCGATTCGGACGTTGATTCGCTTCTCGATGTATCGGTGCTTGACCTGCTTGTAGATGATGACACCGACAGCGGACTTGGTGACGTTGTAGATGACACCAGTCTTTCCGTGGTAGACCTTGAAGGGCATACCCTTCTGGACGGCACCGTTCGCCTTAATGTCGACGATATCTCCAACGCGGTACTGTCGGAGGTAGGTGTTCAGGGCAATCATACCCTTCTTGCGGAAGTCCCGGCTGAAGGCATAGCGGGTGCCCGCTCTCTTTCCGTATGAGTGACCCATCTCGAATCGTGTGATCTGCCGGTCGCGGGAGGGTTGGGGTT]
[-] EMBL AK104044 [ACGATGTCTTTTTTCTGGTCCTATGCCGTACAGACATCAAAAGGCAAGCCCTTGCCATGCAGAATTCTTTCCCATCCGGACGCAATACCCCAAATAAATAGAAGCAAGCACCACCAACCCCCGCAATATCTTTTCTTTTAGATCGTGGTCTCGTAGGCAAGAGGGGTAACGGTCATGGGGGGGTTCTCGGAGAGCGACAGTGTGTGGGCGCCACGAGGTCCAAGGGGCTGACGCTTGACCTGGACAACGGTTCCGGTGGCCTTGGCCTCACGCTTGGCCTCGGCGTTAGCCTTGACTCGCTTGAGGAAGTCCTCACGAGATCGGGACTGCGAGATGTGCTCGATTCGGACGTTGATTCGCTTCTCGATGTATCGGTGCTTGACCTGCTTGTAGATGATGACACCGACAGCGGACTTGGTGACGTTGTAGATGACACCAGTCTTTCCGTGGTAGACCTTGAAGGGCATACCCTTCTGGACGGCACCGTTCGCCTTAATGTCGACGATATCTCCAACGCGGTACTGTCGGAGGTAGGTGTTCAGGGCAATCATACCCTTCTTGCGGAAGTCCCGGCTGAAGGCATAGCGGGTGCCCGCTCTCTTTCCGTATGAGTGACCCATCTCGAATCGTGTGATCTGCCGGTCGCGGGAGGGTTGGGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7168#0 -TTTTTTTTTTTT-----TGGAAGATGATGTCT-ATTGGCGTGAGGGGTT--ACTCAAAG 51
consensus_7168#1 TTTTTTTTTTTTTGAAAATGGAGGATGATTTTTCATTGGCGTGAGGGGTTTTGCTCAAAG 60
consensus_7168#2 ------------------------------------------------------------
consensus_7168#0 CCATAAT-GGCACACCACT---ATATCTGCATCGTGATATCGTCGCTTTCCATGCGTATG 107
consensus_7168#1 CCATATTTGGCACACCACTGCTATATCTGCCGTATCATATCGCCGCTTTCCATGCAGGTG 120
consensus_7168#2 --------------ACGATGTCTTTTTTCTGGTCCTATGCCGTACAGACATCAAAAGGCA 46
* * * * * ** **
consensus_7168#0 AAAGTGCAGAAGAGAGAATAATCGAGAAGTCCGAGAAACCACGCCGTTGACCATCCGTAT 167
consensus_7168#1 AACGTGCAGAAAAGAGAATAATCGAGA--TCCGAGAAACCACGCCGTGAACCATCCGTAA 178
consensus_7168#2 AGCCCTTGCCATGCAGAATTCTTTCCCA-TCCG-GACGCAATACCCCAAATAAATAGAAG 104
* * ***** * **** ** * * ** * * * *
consensus_7168#0 CCCATGTTGCCAGCCCACAAATCCGAACCACCTCTGCAACGTTTAGATGTAGGTCTCGTA 227
consensus_7168#1 CCCAATTTGCCA---TTCGCGCGCAAAGTCCTTTCTCCCCGCTCAAATCGTTGTCTCGTA 235
consensus_7168#2 CAAGCACCACCA------ACCCCCGCAATATCTTTTCT---TTTAGATCGTGGTCTCGTA 155
* *** * * * * * * ** ********
consensus_7168#0 AGGTACGGGTGTGATGTTCTCTGGCTTGTTGTCCTTGAGGCTGACGACACGGTCGCCACG 287
consensus_7168#1 GGCAACAGGTACAATGTTCTCTGGCTTGACCTCCTTCAGGCTGACGACCGCTGAGCCCCT 295
consensus_7168#2 GGCAAGAGGGGTAACGGTCATGGGGGGGTTCTCGGAGAGCGACAGTGTGTGGGCGCCACG 215
* * ** * * ** ** * ** ** * *** *
consensus_7168#0 GGGCATGGCAGGCTGGCGCTTCATCTGCTGGGGCTCGCCAGTCTCCTTGGCCTTTTGTTG 347
consensus_7168#1 GGGCTGTGCGGGGATGCGCTTCAACTGCTGAGGCTCACCAGTCTCCTTAGCCTTCTGCTG 355
consensus_7168#2 AGGTCCAAGGGGCTGACGCTTGACCTGGACAACGGTTCCGGTGGCCTTGGCCTCACGCTT 275
** ** ***** * *** ** ** **** **** * *
consensus_7168#0 CTTGGCGAAGTTGAGCTTGACGCGCTTGAGGAAGTCCTCTCGTGAGCGCGAGTGGCGGAC 407
consensus_7168#1 CTTGGCGAAGTTGGCCTTGACGCGCTTGAGGAAGTCCCCACGGGAACGGGAGTGGCGGAC 415
consensus_7168#2 GGCCTCGGCGTTAGCCTTGACTCGCTTGAGGAAGTCCTCACGAGATCGGGACTGCGAGAT 335
** *** ****** *************** * ** ** ** ** ** **
consensus_7168#0 GTGCTCGATGCGGACGTTGATGCGCTTCTCGAGGTATCGGTTGCCGACCTGCTTCTGGAG 467
consensus_7168#1 GTGCTCGATGCGGACGTTGATACGCTTCTCGAGGTAGCGGTTGCCGACCTGCTTCTGGAG 475
consensus_7168#2 GTGCTCGATTCGGACGTTGATTCGCTTCTCGATGTATCGGTGCTTGACCTGCTTGTAGAT 395
********* *********** ********** *** **** ********* * **
consensus_7168#0 GATGACACCAACAGCGGACTTGGTGACGTTGTAGACGATACCGGTCTTGCCGTGGTAGAC 527
consensus_7168#1 GATGACACCGACGGAGGACTTGGTGACGTTGTAGACAATACCGGTCTTACCGTGGTAGAC 535
consensus_7168#2 GATGACACCGACAGCGGACTTGGTGACGTTGTAGATGACACCAGTCTTTCCGTGGTAGAC 455
********* ** * ******************** * *** ***** ***********
consensus_7168#0 CTTGTAGGGCATACCCTTCTGGACCGCACCGTTGGCAACGACATCGACGATATCGCCGAC 587
consensus_7168#1 CTTGTAGGGCATACCCTTCTGGACGGCACCGTTTGCTACGACATCGACGATATCACCGAC 595
consensus_7168#2 CTTGAAGGGCATACCCTTCTGGACGGCACCGTTCGCCTTAATGTCGACGATATCTCCAAC 515
**** ******************* ******** ** * *********** ** **
consensus_7168#0 CTTGTACTGCTTGAGGTAGGTCGAGAGAGGGATCATACCCTTCTTCTTGAAGTCCCTCGA 647
consensus_7168#1 CTTGTACTGCTTGAGGTAGGTCGAGAGAGGGATCATACCCTTCTTCTTGAAGTCGCG-GA 654
consensus_7168#2 GCGGTACTGTCGGAGGTAGGTGTTCAGGGCAATCATACCCTTCTTGCGGAAGTCCCGGCT 575
****** ********* ** * ************** ****** *
consensus_7168#0 GAATGCATAGCGCGTACCCGCGCGA----------------------------------- 672
consensus_7168#1 GAAGGCATA--------------------------------------------------- 663
consensus_7168#2 GAAGGCATAGCGGGTGCCCGCTCTCTTTCCGTATGAGTGACCCATCTCGAATCGTGTGAT 635
*** *****
consensus_7168#0 --------------------------
consensus_7168#1 --------------------------
consensus_7168#2 CTGCCGGTCGCGGGAGGGTTGGGGTT 661
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||