|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1172 fasta sequence
[ACTAATCGATCACCGCACTATACACAATACGACCATTAGCTATTACTAGCTAGCTATATATCCCTCCCTTGTTTCTTTCGAGCAAGAGCGATGGAAACGGCGCCGGCCGCGAACGGTTGTAGTGGCGGCCGCCGGCTGCAGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGTGGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGCGTGCGGGTCACCGACCTCGCGCCGGCGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTCCTCGGCGAGGCCCTCCGCGACGGCCGCGCCGTCTATGACTCCGTCAATGTTTGCGACATAACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTTTTTCAC-ACAGCTGCTGCAGACCCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGACACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATGAATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAAACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGAATGTGTGAATTCATTTTGCTTCGACCATATCTAAGACCTCATACATGGAGCAAGTTCTATTGCTATTGAAGATGTAAAATTTATTTGACATGGATGATAACCAATGGTCGATGGCAATGATGTCTACACATATAAGTTTGATGTATTTTTTTTACAAATGGCTAAGTATTGTAATCTTGTTGGGAACAATATTGATTCTTATTGGAGAATGGGCTTCCACTTGTTGCAGTCAACATAATTGTAATATATATCTGTGAGATTTTTATTGCTATATCTCTTTATGCAAAAA]
[+] EMBL AK099537 [ACTAATCGATCACCGCACTATACACAATACGACCATTAGCTATTACTAGCTAGCTATATATCCCTCCCTTGTTTCTTTCGAGCAAGAGCGATGGAAACGGCGCCGGCCGCGAACGGTTGTAGTGGCGGCCGCCGGCTGCAGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGTGGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGCGTGCGGATCACCGACCTCGCGCCGGCGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTCCTCGGCGAGGCCCTCCGCGACGGCCACGCCGTCTATGACTCCGTCAATGTTTGCGACATAACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTTTTTCAC ACAGCTGCTGCAGACCCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGACACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATGAATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAAACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGAATGTGTGAATTCATTTTGCTTCGACCATATCTAAGACCTCATACATGGAGCAAGTTCTATTGCTATTGAAGATGTAAAATTTATTTGACATGGATGATAACCAATGGTCGATGGCAATGATGTCTACACATATAAGTTTGATGTATTTTTTTTACAAATGGCTAAGTATTGTAATCTTGTTGGGAACAATATTGATTCTTATTGGAGAATGGGCTTCCACTTGTTGCAGTCAACATAATTGTAATATATATCTGTGAGATTTTTATTGCTATATCTCTTTATGCAAAAA]
[+] EMBL BF430534 [ TAGCTAGCTATATATCCCTCCCTTGTTTCTTTCGAGCAAGAGCGATGGAAACGGCGCCGGCCGCGAACGGTTGTAGTGGCGGCCGCCGGCTGCAGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGTGGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGCGTGCGGGTCACCGACCTCGCGCCGAAGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTCCTCGGCGAGGCCCTCCGCGACGGCCGCGCCGTCTATGACTCCGGCAATGTTTGCGACATAACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTTTTTCAC ACAGCTGCTGCAGACCCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCACGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGG ]
[+] EMBL CB965557 [ AGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGTGGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGCGTGCGGGTCACCGACCTCGCGCCGGCGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTCCTCGGCGAGGCCCTCCGCGACGGCCGCGCCGTCTATGACTCCGTCAATGTTTGCGACATAACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTATTTCACGACAGCTGCTGCAGACCCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTATTGATGTAGATGAATCAATGACATAGCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATT CAACGGg ]
consensusID : consensus_7174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[ACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGACACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATGAATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAAACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGGTATATCACTATTATTGAATTGCACTAGTTTCACTGCTGATAAATTTTCATGGTGCATTTAACTTTCTCTAGGCTTACTTCATAACTAATATGGAGCCTATGAACTTGTGGGACTTTCTTTATATGCTTTTAGAAGAACTTGGATATAAAAGGTGATGCTTCTTCCTAGATATCATACATATAACCTAAAGTATATTCTTAGCTTCTAAAATATGCAGTCTCCATACACTCTAATTGATGTAATATTGAAGTTGGCAATATAAATTAGAAGGATAGTTGTCTATGGATGTATTGATCATGCAAATTGTTTGATTCCTTATGTTTTATAAAAGTTGGCCACT]
[-] EMBL CB656847 [ACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGACACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATGAATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAAACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGGTATATCACTATTATTGAATTGCACTAGTTTCACTGCTGATAAATTTTCATGGTGCATTTAACTTTCTCTAGGCTTACTTCATAACTAATATGGAGCCTATGAACTTGTGGGACTTTCTTTATATGCTTTTAGAAGAACTTGGATATAAAAGGTGATGCTTCTTCCTAGATATCATACATATAACCTAAAGTATATTCTTAGCTTCTAAAATATGCAGTCTCCATACACTCTAATTGATGTAATATTGAAGTTGGCAATATAAATTAGAAGGATAGTTGTCTATGGATGTATTGATCATGCAAATTGTTTGATTCCTTATGTTTTATAAAAGTTGGCCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7174#0 ACTAATCGATCACCGCACTATACACAATACGACCATTAGCTATTACTAGCTAGCTATATA 60
consensus_7174#1 ------------------------------------------------------------
consensus_7174#0 TCCCTCCCTTGTTTCTTTCGAGCAAGAGCGATGGAAACGGCGCCGGCCGCGAACGGTTGT 120
consensus_7174#1 ------------------------------------------------------------
consensus_7174#0 AGTGGCGGCCGCCGGCTGCAGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGT 180
consensus_7174#1 ------------------------------------------------------------
consensus_7174#0 GGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGC 240
consensus_7174#1 ------------------------------------------------------------
consensus_7174#0 GTGCGGGTCACCGACCTCGCGCCGGCGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTC 300
consensus_7174#1 ------------------------------------------------------------
consensus_7174#0 CTCGGCGAGGCCCTCCGCGACGGCCGCGCCGTCTATGACTCCGTCAATGTTTGCGACATA 360
consensus_7174#1 ------------------------------------------------------------
consensus_7174#0 ACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTTTTTCACACAGCTGCTGCAGAC 420
consensus_7174#1 ------------------------------------------------------------
consensus_7174#0 CCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTT 480
consensus_7174#1 ----------ACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTT 50
**************************************************
consensus_7174#0 ATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTT 540
consensus_7174#1 ATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTT 110
************************************************************
consensus_7174#0 GTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAG 600
consensus_7174#1 GTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAG 170
************************************************************
consensus_7174#0 TTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAAC 660
consensus_7174#1 TTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAAC 230
************************************************************
consensus_7174#0 GGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGAC 720
consensus_7174#1 GGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGAC 290
************************************************************
consensus_7174#0 ACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATG 780
consensus_7174#1 ACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATG 350
************************************************************
consensus_7174#0 AATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAA 840
consensus_7174#1 AATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAA 410
************************************************************
consensus_7174#0 ACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGAATGTGTGAATTCATTTT 900
consensus_7174#1 ACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGG-TATATCACTATTATTG 469
****************************************** * * * * * **
consensus_7174#0 GCTTCGACCATATCTAAGACCTCATACATGGAGCAAGTTCTATTGCTATTGAAGATGTAA 960
consensus_7174#1 AATTGCACTA-GTTTCACTGCTGATAAATTTTCATGGTGCATTTAACTTTCTCTAGGCTT 528
** ** * * * * ** *** ** ** * ** ** * *
consensus_7174#0 AATTTAT--TTGACATGGA---TGATAACCAATGGTCGATGGCAATGATGTCTACACATA 1015
consensus_7174#1 ACTTCATAACTAATATGGAGCCTATGAACTTGTGGGACTTTCTTTATATGCTTTTAGA-A 587
* ** ** * * ***** * *** *** * *** * * * *
consensus_7174#0 TAAGTTTGATGTATTTTTTT-TACAAATGGCTAAGTATTGTAATCTTGTTGGGAACAATA 1074
consensus_7174#1 GAACTTGGATATAAAAGGTGATGCTTCTTCCTAGATATCATACATATAACCTAAAGTATA 647
** ** *** ** * * * * *** *** ** * ** ***
consensus_7174#0 TTGATTCTTATTGGAGAATG-GGCTTCCACTTGTTGCAGTCAACATAATT---------G 1124
consensus_7174#1 TTCTTAGCTTCTAAAATATGCAGTCTCCATACACTCTAATTGATGTAATATTGAAGTTGG 707
** * * * * *** * **** * * * * **** *
consensus_7174#0 TAATATATATCTGTGAGATTTTTATTGCTATATCTCTT---TATGCAAAAA--------- 1172
consensus_7174#1 CAATATAAATTAGAAGGATAGTTGTCTATGGATGTATTGATCATGCAAATTGTTTGATTC 767
****** ** * *** ** * * ** * ** *******
consensus_7174#0 --------------------------
consensus_7174#1 CTTATGTTTTATAAAAGTTGGCCACT 793
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||