cluster # 7177

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Oryza sativa
cluster # 7177 cluster # 7177 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7177#0 length = 890 sequences # 3

consensus_7177#1 length = 342 sequences # 1

consensusID : consensus_7177#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 890
fasta sequence

                              [TCCGCCATGTCAAGCGGCGGCAACCAGGAGAGGACCTGCTGCGGCAGCCTGTTCACCTTCATCGTCACCGGCGGCTTCGTGGTGCTCATCTACTGGGCCATCTTCCAGCCCCACCACATCCGCGCCACCGTCGCCTCCGCCGACCTCACCAACCTCACCGTCGCCGGCGCCGCCGTCTCCTACAAGCTCGCCGTCAGGCTCAACCTCTACAACCCCAGCCTCCGCGTCAACATCTACTACGACGAGCTCGACTCCGAGCTCCGCTTCCGCGGCGAGCGCCTCGGCCACGCCACCGGCGCCACCCCGGCCGAGTTCTACCAGCGGCGGAAGAGCTCCGACGACGTGACGTTTGAGTTCGCCGGGACAGGCGTCGCCGTCGCCGGCGACGCCGCCGGCGAGCTGGGGAAGGAGAAGGGGAAGGGCAGCG-TGAGCCTGGAGGTGGCCGTCGACGGCAAGGTGAGGTACAGGTTCGGCAGCATCAAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGCGGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCTAGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACTTGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTATTTTTTTTTGGGTGTAGGGTGTCAGTGATAATCGTTCGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAATCTACAATTTTTTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL AK107952             [TCCGCCATGTCAAGCGGCGGCAACCAGGAGAGGACCTGCTGCGGCAGCCTGTTCACCTTCATCGTCACCGGCGGCTTCGTGGTGCTCATCTACTGGGCCATCTTCCAGCCCCACCACATCCGCGCCACCGTCGCCTCCGCCGACCTCACCAACCTCACCGTCGCCGGCGCCGCCGTCTCCTACAAGCTCGCCGTCAGGCTCAACCTCTACAACCCCAGCCTCCGCGTCAACATCTACTACGACGAGCTCGACTCCGAGCTCCGCTTCCGCGGCGAGCGCCTCGGCCACGCCACCGGCGCCACCCCGGCCGAGTTCTACCAGCGGCGGAAGAGCTCCGACGACGTGACGTTTGAGTTCGCCGGGACAGGCGTCGCCGTCGCCGGCGACGCCGCCGGCGAGCTGGGGAAGGAGAAGGGGAAGGGCAGCG TGAGCCTGGAGGTGGCCGTCGACGGCAAGGTGAGGTACAGGTTCGGCAGCATCAAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGCGGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCTAGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACTTGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTATTTTTTTTTGGGTGTAGGGTGTCAGTGATAATCGTTCGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAATCTACAAT                                                                                                       ]
[+] EMBL AU082129             [TCCGCCATGTCAAGCGGCGGCAACCAGGAGAGGACCTGCTGCGGCAGCCTGTTCACCTTCATCGTCACCGGCGGCTTCGTGGTGCTCATCTACTGGGCCATCTTCCAGCCCCACCACATCCGCGCCACCGTCGNCTCCGCCGACCTCACCAACCTCANCGTCGNCGGAGCCGCgt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA754267             [                                                                                                                                                                                                                                                                                              ACGCCACCGGCGCCACCCCGGCCGAGTTCTACCAGCGGCGGAAGAGCTCCGACGACGTGACGTTTGAGTTCGCCGGGACAGGCGTCGCCGTCGCCGGCGACGCCGCCGGCGAGCTGGGGAAGGAGAAGGGGAAGGGCAGCGTTGAGCCTGGAGGTGGCCGTCGACGGCAAGGTGAGGTACAGGTTCGGCAGCATCAAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGCGGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCTAGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACTTGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTA TTTTTTTTGGGTGTAGGGTGTCAGTGATAATCGTTTGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAATCTACAATTTTTTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_7177#0
TCCGCCATGTCAAGCGGCGGCAACCAGGAGAGGACCTGCTGCGGCAGCCTGTTCACCTTC
ATCGTCACCGGCGGCTTCGTGGTGCTCATCTACTGGGCCATCTTCCAGCCCCACCACATC
CGCGCCACCGTCGCCTCCGCCGACCTCACCAACCTCACCGTCGCCGGCGCCGCCGTCTCC
TACAAGCTCGCCGTCAGGCTCAACCTCTACAACCCCAGCCTCCGCGTCAACATCTACTAC
GACGAGCTCGACTCCGAGCTCCGCTTCCGCGGCGAGCGCCTCGGCCACGCCACCGGCGCC
ACCCCGGCCGAGTTCTACCAGCGGCGGAAGAGCTCCGACGACGTGACGTTTGAGTTCGCC
GGGACAGGCGTCGCCGTCGCCGGCGACGCCGCCGGCGAGCTGGGGAAGGAGAAGGGGAAG
GGCAGCGTGAGCCTGGAGGTGGCCGTCGACGGCAAGGTGAGGTACAGGTTCGGCAGCATC
AAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGC
GGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCT
AGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACT
TGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTATTTTTTTTTGGGTGTAGGGT
GTCAGTGATAATCGTTCGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAAT
CTACAATTTTTTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_7177#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [ATCAAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGCGGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCTAGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACTTGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTATTTTTTTTGGGTGTAGGGTGTCAGTGATAATCGTTTGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAATCTACAATTTTTTGAACGAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU174614             [ATCAAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGCGGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCTAGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACTTGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTATTTTTTTTGGGTGTAGGGTGTCAGTGATAATCGTTTGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAATCTACAATTTTTTGAACGAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7177#1
ATCAAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGAC
GGCGGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTA
GCTAGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCC
ACTTGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTATTTTTTTTGGGTGTAGG
GTGTCAGTGATAATCGTTTGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCA
ATCTACAATTTTTTGAACGAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7177#0      TCCGCCATGTCAAGCGGCGGCAACCAGGAGAGGACCTGCTGCGGCAGCCTGTTCACCTTC 60
consensus_7177#1      ------------------------------------------------------------
                                                                                  

consensus_7177#0      ATCGTCACCGGCGGCTTCGTGGTGCTCATCTACTGGGCCATCTTCCAGCCCCACCACATC 120
consensus_7177#1      ------------------------------------------------------------
                                                                                  

consensus_7177#0      CGCGCCACCGTCGCCTCCGCCGACCTCACCAACCTCACCGTCGCCGGCGCCGCCGTCTCC 180
consensus_7177#1      ------------------------------------------------------------
                                                                                  

consensus_7177#0      TACAAGCTCGCCGTCAGGCTCAACCTCTACAACCCCAGCCTCCGCGTCAACATCTACTAC 240
consensus_7177#1      ------------------------------------------------------------
                                                                                  

consensus_7177#0      GACGAGCTCGACTCCGAGCTCCGCTTCCGCGGCGAGCGCCTCGGCCACGCCACCGGCGCC 300
consensus_7177#1      ------------------------------------------------------------
                                                                                  

consensus_7177#0      ACCCCGGCCGAGTTCTACCAGCGGCGGAAGAGCTCCGACGACGTGACGTTTGAGTTCGCC 360
consensus_7177#1      ------------------------------------------------------------
                                                                                  

consensus_7177#0      GGGACAGGCGTCGCCGTCGCCGGCGACGCCGCCGGCGAGCTGGGGAAGGAGAAGGGGAAG 420
consensus_7177#1      ------------------------------------------------------------
                                                                                  

consensus_7177#0      GGCAGCGTGAGCCTGGAGGTGGCCGTCGACGGCAAGGTGAGGTACAGGTTCGGCAGCATC 480
consensus_7177#1      ---------------------------------------------------------ATC 3
                                                                               ***

consensus_7177#0      AAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGC 540
consensus_7177#1      AAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGGC 63
                      ************************************************************

consensus_7177#0      GGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCT 600
consensus_7177#1      GGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCT 123
                      ************************************************************

consensus_7177#0      AGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACT 660
consensus_7177#1      AGTGGGCAATGATTTGAGTGTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACT 183
                      ************************************************************

consensus_7177#0      TGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTATTTTTTTTTGGGTGTAGGGT 720
consensus_7177#1      TGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGTATTTTTTTT-GGGTGTAGGGT 242
                      ************************************************ ***********

consensus_7177#0      GTCAGTGATAATCGTTCGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAAT 780
consensus_7177#1      GTCAGTGATAATCGTTTGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAAT 302
                      **************** *******************************************

consensus_7177#0      CTACAATTTTTTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 840
consensus_7177#1      CTACAATTTTTTGAACGAAAAAAAAAAAAAAAAAAAAAAA-------------------- 342
                      ************* ***                                           

consensus_7177#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 890
consensus_7177#1      --------------------------------------------------