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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7179 cluster # 7179       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7179#0 length = 683 sequences # 3  
consensus_7179#1 length = 245 sequences # 1  

consensusID : consensus_7179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 683
fasta sequence
                              [TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGTGAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTATCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATTANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTGTTTCAT-CATCAT-CCTGA-CTG-CATTCT-GGCA-TGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT-TTT-TGTGACA-TCAGAGCCCAACCAGAAACGGCTCC-AACGCATGCGCTACAATGTAA-CA-AGTTATTAGTCT-GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAAAATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATGCTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTCATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCCCCAAATTTGTTCTAAAAAAAAAA]

[+] EMBL BM418927             [TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGTGAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTATCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATTANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTGTTGCATGCATCATCCCTGATCTG CATTCTCGGCACTGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT TTT TGTGACACTCAGAGCCCAACCAGAAACGGCTCC AACGCATGCGCTAC ATGTAACCACAGTTATTAGTCT GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAAAA                                                                                                                                                                                                         ]
[+] EMBL AU070685             [                                                                                                                                                                                                                                       tccaTGTTGTTTCAT CATCAT CCT A CTG CATTCT GGCA TGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT TTT TGTGACA TCAGAGCCCAACCAGAAACGGCTCCAAACGCATGCGCTACAATGTAA CA AGTTATTAGTCT GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCAaaaa                                                                                                                                                                                                                  ]
[+] EMBL BM420718             [                                                                                                                                                                                                                                                  TCAT CATCAT CCTGA CTGCCATTCT GGCA TGCTT CTGGGACCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTGTTTGTGTGACA TCAGAGCCCAACCAG AACGGCTCC AACGCATGCGCTACAATGTAA CA AGTTATTAGTCTGGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCACTTCATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATGCTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTCATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCCCCAAATTTGTTCTAAAAAAAAAA]


>consensus_7179#0 TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGT GAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTA TCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATT ANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTG TTTCATCATCATCCTGACTGCATTCTGGCATGCTTGCTGGGAGCCTTTGTAAATCGAAGA GGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATG CGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCACGATTAGCTAATGTGTAT TGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAA AATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATG CTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTC ATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCC CCAAATTTGTTCTAAAAAAAAAA



consensusID : consensus_7179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence
                              [AGAGGACGAGACAAGGGGGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATGCGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC]

[-] EMBL CA761495             [AGAGGACGAGACAAGGGGGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATGCGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC]


>consensus_7179#1 AGAGGACGAGACAAGGGGGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGA AACGGCTCCAACGCATGCGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCC GATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAA TATGCATGTTCCCAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA GCGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7179#0      TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGT 60
consensus_7179#1      ------------------------------------------------------------
                                                                                  

consensus_7179#0      GAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTA 120
consensus_7179#1      ------------------------------------------------------------
                                                                                  

consensus_7179#0      TCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATT 180
consensus_7179#1      ------------------------------------------------------------
                                                                                  

consensus_7179#0      ANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTG 240
consensus_7179#1      ------------------------------------------------------------
                                                                                  

consensus_7179#0      TTTCATCATCATCCTGACTGCATTCTGGCATGCTTGCTGGGAGCCTTTGTAAATCGAAGA 300
consensus_7179#1      ---------------------------------------AGAG----GACGAGACAAGGG 17
                                                              ***        *  * * * 

consensus_7179#0      GGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATG 360
consensus_7179#1      GGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATG 77
                      ************************************************************

consensus_7179#0      CGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCACGATTAGCTAATGTGTAT 420
consensus_7179#1      CGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTAT 137
                      ***************************************** ******************

consensus_7179#0      TGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAA 480
consensus_7179#1      TGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAA 197
                      ***************************************************** ******

consensus_7179#0      AATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATG 540
consensus_7179#1      AAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC------------ 245
                      ** **       *   **  *      * ***       *      **            

consensus_7179#0      CTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTC 600
consensus_7179#1      ------------------------------------------------------------
                                                                                  

consensus_7179#0      ATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCC 660
consensus_7179#1      ------------------------------------------------------------
                                                                                  

consensus_7179#0      CCAAATTTGTTCTAAAAAAAAAA 683
consensus_7179#1      -----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)