These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGTGAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTATCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATTANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTGTTTCAT-CATCAT-CCTGA-CTG-CATTCT-GGCA-TGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT-TTT-TGTGACA-TCAGAGCCCAACCAGAAACGGCTCC-AACGCATGCGCTACAATGTAA-CA-AGTTATTAGTCT-GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAAAATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATGCTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTCATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCCCCAAATTTGTTCTAAAAAAAAAA] [+] EMBL BM418927 [TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGTGAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTATCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATTANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTGTTGCATGCATCATCCCTGATCTG CATTCTCGGCACTGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT TTT TGTGACACTCAGAGCCCAACCAGAAACGGCTCC AACGCATGCGCTAC ATGTAACCACAGTTATTAGTCT GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAAAA ] [+] EMBL AU070685 [ tccaTGTTGTTTCAT CATCAT CCT A CTG CATTCT GGCA TGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT TTT TGTGACA TCAGAGCCCAACCAGAAACGGCTCCAAACGCATGCGCTACAATGTAA CA AGTTATTAGTCT GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCAaaaa ] [+] EMBL BM420718 [ TCAT CATCAT CCTGA CTGCCATTCT GGCA TGCTT CTGGGACCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTGTTTGTGTGACA TCAGAGCCCAACCAG AACGGCTCC AACGCATGCGCTACAATGTAA CA AGTTATTAGTCTGGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCACTTCATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATGCTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTCATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCCCCAAATTTGTTCTAAAAAAAAAA] consensusID : consensus_7179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [AGAGGACGAGACAAGGGGGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATGCGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC] [-] EMBL CA761495 [AGAGGACGAGACAAGGGGGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATGCGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7179#0 TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGT 60 consensus_7179#1 ------------------------------------------------------------ consensus_7179#0 GAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTA 120 consensus_7179#1 ------------------------------------------------------------ consensus_7179#0 TCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATT 180 consensus_7179#1 ------------------------------------------------------------ consensus_7179#0 ANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTG 240 consensus_7179#1 ------------------------------------------------------------ consensus_7179#0 TTTCATCATCATCCTGACTGCATTCTGGCATGCTTGCTGGGAGCCTTTGTAAATCGAAGA 300 consensus_7179#1 ---------------------------------------AGAG----GACGAGACAAGGG 17 *** * * * * consensus_7179#0 GGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATG 360 consensus_7179#1 GGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATG 77 ************************************************************ consensus_7179#0 CGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCACGATTAGCTAATGTGTAT 420 consensus_7179#1 CGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTAT 137 ***************************************** ****************** consensus_7179#0 TGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAA 480 consensus_7179#1 TGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAA 197 ***************************************************** ****** consensus_7179#0 AATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATG 540 consensus_7179#1 AAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC------------ 245 ** ** * ** * * *** * ** consensus_7179#0 CTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTC 600 consensus_7179#1 ------------------------------------------------------------ consensus_7179#0 ATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCC 660 consensus_7179#1 ------------------------------------------------------------ consensus_7179#0 CCAAATTTGTTCTAAAAAAAAAA 683 consensus_7179#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||