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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence
[TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGTGAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTATCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATTANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTGTTTCAT-CATCAT-CCTGA-CTG-CATTCT-GGCA-TGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT-TTT-TGTGACA-TCAGAGCCCAACCAGAAACGGCTCC-AACGCATGCGCTACAATGTAA-CA-AGTTATTAGTCT-GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAAAATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATGCTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTCATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCCCCAAATTTGTTCTAAAAAAAAAA]
[+] EMBL BM418927 [TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGTGAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTATCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATTANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTGTTGCATGCATCATCCCTGATCTG CATTCTCGGCACTGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT TTT TGTGACACTCAGAGCCCAACCAGAAACGGCTCC AACGCATGCGCTAC ATGTAACCACAGTTATTAGTCT GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAAAA ]
[+] EMBL AU070685 [ tccaTGTTGTTTCAT CATCAT CCT A CTG CATTCT GGCA TGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCT TTT TGTGACA TCAGAGCCCAACCAGAAACGGCTCCAAACGCATGCGCTACAATGTAA CA AGTTATTAGTCT GTAGCATAGAGATCACGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCAaaaa ]
[+] EMBL BM420718 [ TCAT CATCAT CCTGA CTGCCATTCT GGCA TGCTT CTGGGACCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTGTTTGTGTGACA TCAGAGCCCAACCAG AACGGCTCC AACGCATGCGCTACAATGTAA CA AGTTATTAGTCTGGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCACTTCATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATGCTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTCATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCCCCAAATTTGTTCTAAAAAAAAAA]
consensusID : consensus_7179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence
[AGAGGACGAGACAAGGGGGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATGCGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC]
[-] EMBL CA761495 [AGAGGACGAGACAAGGGGGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATGCGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTATTGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7179#0 TTCCCAGGGCCAGGTGTGGCTCCATAAATTGTCACTCCTAGGGGGAAGTATGTTTCCTGT 60
consensus_7179#1 ------------------------------------------------------------
consensus_7179#0 GAAAGATTGGACCCAATTCGTGTAGGTTTCCACGCGAGCCACGGTCCACAGCCCGCTGTA 120
consensus_7179#1 ------------------------------------------------------------
consensus_7179#0 TCGTGCCACTGAGAAGTGATAACTACGGATTGAAGTATGGTTCTTATGGAACCTGAAATT 180
consensus_7179#1 ------------------------------------------------------------
consensus_7179#0 ANATTANCCGCCCCACTGTAATTGATTTTCCCCACTATTTNCCGTGCCACTGTGTTGGTG 240
consensus_7179#1 ------------------------------------------------------------
consensus_7179#0 TTTCATCATCATCCTGACTGCATTCTGGCATGCTTGCTGGGAGCCTTTGTAAATCGAAGA 300
consensus_7179#1 ---------------------------------------AGAG----GACGAGACAAGGG 17
*** * * * *
consensus_7179#0 GGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATG 360
consensus_7179#1 GGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAACGGCTCCAACGCATG 77
************************************************************
consensus_7179#0 CGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCACGATTAGCTAATGTGTAT 420
consensus_7179#1 CGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCCCGATTAGCTAATGTGTAT 137
***************************************** ******************
consensus_7179#0 TGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCAAAA 480
consensus_7179#1 TGTTTTATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTCCCAAAA 197
***************************************************** ******
consensus_7179#0 AATAGCTTTTTTATGGAAGCATGTGTGAGAAATCTCTGTATGTTTAGCCACGGCGAGATG 540
consensus_7179#1 AAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC------------ 245
** ** * ** * * *** * **
consensus_7179#0 CTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACAACTTGGCAGAGCGTC 600
consensus_7179#1 ------------------------------------------------------------
consensus_7179#0 ATACTGGTATTCTGTACATTCTTCGATACNGTGATGTGTATACAGAATGGCACACATGCC 660
consensus_7179#1 ------------------------------------------------------------
consensus_7179#0 CCAAATTTGTTCTAAAAAAAAAA 683
consensus_7179#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||