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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1946 fasta sequence
[GAGGTGACGAGGTGTAATTAAGATGAAGATTACAAGCACGGCGATGCTGGCGCCGGTGTACGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGCGTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGCGATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGCCGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGAGGCCACCGTCGACGGCGCCGACCTAGACGACGTGCTCGCCAACAGCGGCCGCGCCATGGCCACCGACGTCGCCGACCTCTACCCCGCGTTGCCGGAGGACAACGTCGGCGCCGCGCTGCTGCAGGTGAAGCTCGTCCGGTACAGGTGCGGCGGCCTCGTCGTCGGCAGCATCTGCCACCACCACACCGCCGACGGCCACTCCATGAGCGCCTTCTTCACCGCGTGGGCGACCGCGGTGCGCGAGGGGGAGGGCTTCACCGCGCCGACGCCTTTCCTCGACCGCGCCGCCACGGCCGTGCCCCGCACCCCGCCGGTGCCGGCGTTCGACCACCGTTCCATCGAGTTCGACGGAGGAGAAGCCGCCGCCGCCGGTGGCGGCAGGTCGTCCTACGCCGCCGTGTCCCTGGACAAGATCAAGGACCTGACCGTGCACTTCACGGCGGAGTTCGTCGGCGAGCTCAAGGCCCGCGCCGGCGGCCGGTGCAGCACGTTCCAGTGCCTGCTCGCGCACGTGTGGAAGAAGATCACGGCGGCGAGGGACCTGAGCCCGGAGGAGTTCACGCAGGTGAGGGTGGCGGTGAACTGCCGGGGCAGAGCCAACCCGCCCGTGCCCATGGACTTCTTCGGCAACATGGTGCTCTGGGCGTTCCCGAGGATGCGGGCGCGCGAGCTCCTCCGCGCCACCTACGGCGCCGTCGTGGGCGCCATCCGCGACGCCGTGGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGCGGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTGCCCAGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCACCGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGTCCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGTCGAGGCGTTCGAGCGCATCATCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCCGTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTGCCCCAATTTAAGTGTAGTCGTGGTTTTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAAAAAATAGTTTCACATAAAGTAATATTCATGTTTTATCATATAATAACAATAAAAATACTAATCATAAAAGTTTTTACAAATAAGACAGATGGTAAATGTTGAACACAACCAATGCAAAACTGCAGTCTTCTGGGATGGAAGTAGTATAAAACTATGGCGTGCGGGTGGCAAACTGATGTGATTAGCCACTTGTCTTTCCACGATGCTGTTTTCTCGAGCTTGTGTTGATGTTAAGCGTGATTAGCCACAGTCTAATGTGCAAATTTGTTCTGTAAATATATATAAGATTGATGGCTTGATGGGGAGAACAGCAAGTTTATGTACAGTGGAGTATGTAAGAGATATAAAACGAATATCTTGTATTTTGTGCTGGATGATTATGACTGTTCAGCATTGCTTATGACAAACGCATTACCCAAAGAATTAAAGTATAGAGGCGTTTTGAA]
[+] EMBL AK108939 [GAGGTGACGAGGTGTAATTAAGATGAAGATTACAAGCACGGCGATGCTGGCGCCGGTGTACGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGCGTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGCGATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGCCGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGAGGCCACCGTCGACGGCGCCGACCTAGACGACGTGCTCGCCAACAGCGGCCGCGCCATGGCCACCGACGTCGCCGACCTCTACCCCGCGTTGCCGGAGGACAACGTCGGCGCCGCGCTGCTGCAGGTGAAGCTCGTCCGGTACAGGTGCGGCGGCCTCGTCGTCGGCAGCATCTGCCACCACCACACCGCCGACGGCCACTCCATGAGCGCCTTCTTCACCGCGTGGGCGACCGCGGTGCGCGAGGGGGAGGGCTTCACCGCGCCGACGCCTTTCCTCGACCGCGCCGCCACGGCCGTGCCCCGCACCCCGCCGGTGCCGGCGTTCGACCACCGTTCCATCGAGTTCGACGGAGGAGAAGCCGCCGCCGCCGGTGGCGGCAGGTCGTCCTACGCCGCCGTGTCCCTGGACAAGATCAAGGACCTGACCGTGCACTTCACGGCGGAGTTCGTCGGCGAGCTCAAGGCCCGCGCCGGCGGCCGGTGCAGCACGTTCCAGTGCCTGCTCGCGCACGTGTGGAAGAAGATCACGGCGGCGAGGGACCTGAGCCCGGAGGAGTTCACGCAGGTGAGGGTGGCGGTGAACTGCCGGGGCAGAGCCAACCCGCCCGTGCCCATGGACTTCTTCGGCAACATGGTGCTCTGGGCGTTCCCGAGGATGCGGGCGCGCGAGCTCCTCCGCGCCACCTACGGCGCCGTCGTGGGCGCCATCCGCGACGCCGTGGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGCGGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTGCCCAGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCACCGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGTCCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGTCGAGGCGTTCGAGCGCATCATCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCCGTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTGCCCCAATTTAAGTGTAGTCGTGGTTTTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAAAAAATAGTTTCACATAAAGTAATATTCATGTTTTATCATATAATAACAATAAAAATACTAATCATAAAAGTTTTTACAAATAAGACAGATGGTAAATGTTGAACACAACCAATGCAAAACTGCAGTCTTCTGGGATGGAAGTAGTATAAAACTATGGCGTGCGGGTGGCAAACTGATGTGATTAGCCACTTGTCTTTCCACGATGCTGTTTTCTCGAGCTTGTGTTGATGTTAAGCGTGATTAGCCACAGTCTAATGTGCAAATTTGTTCTGTAAATATATATAAGATTGATGGCTTGATGGGGAGAACAGCAAGTTTATGTACAGTGGAGTATGTAAGAGATATAAAACGAATATCTTGTATTTTGTGCTGGATGATTATGACTGTTCAGCATTGCTTATGACAAACGCATTACCCAAAGAATTAAAGTATAGAGGCGTTTTGAA]
[+] EMBL AU070667 [ AATTAAGATGAAGATTACAAGCACGGCGATGCTGGCGCCGGTGTACGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGCGTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGCGATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGCCGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGAGGCCACCGTCGACGGCGCCGACCTAGACGACGTG ]
[+] EMBL AU163456 [ AGATGAAGATTACAAGCACGGCGATGNTGGCGCCGGTGTACGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGCGTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGCGATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGCCGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGAGGCCACCGTCGACGGCGCCGACCTAGACGACGTGC ]
consensusID : consensus_7192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[GCCGTCGTGGGCGCCATCCGCGACGCCGTGGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGCGGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTGCCCGGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCACCGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGTCCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGTCGAGGCGTTCGAGCGCATCGTCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCCGTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTGTCCCAATTTAAGTGTAGTCGGGTATTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAAAAAATAGTTTCACATTNAAAANANNNNNNNNNNNNNNNANNNNNNATATANNTAATATNNAAAN]
[+] EMBL BE041116 [GCCGTCGTGGGCGCCATCCGCGACGCCGTGGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGCGGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTGCCCGGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCACCGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGTCCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGTCGAGGCGTTCGAGCGCATCGTCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCCGTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTGTCCCAATTTAAGTGTAGTCGGGTATTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAAAAAATAGTTTCACATTNAAAANANNNNNNNNNNNNNNNANNNNNNATATANNTAATATNNAAAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7192#0 GAGGTGACGAGGTGTAATTAAGATGAAGATTACAAGCACGGCGATGCTGGCGCCGGTGTA 60
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGC 120
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 GTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGC 180
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 GATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGC 240
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGA 300
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 GGCCACCGTCGACGGCGCCGACCTAGACGACGTGCTCGCCAACAGCGGCCGCGCCATGGC 360
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CACCGACGTCGCCGACCTCTACCCCGCGTTGCCGGAGGACAACGTCGGCGCCGCGCTGCT 420
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 GCAGGTGAAGCTCGTCCGGTACAGGTGCGGCGGCCTCGTCGTCGGCAGCATCTGCCACCA 480
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CCACACCGCCGACGGCCACTCCATGAGCGCCTTCTTCACCGCGTGGGCGACCGCGGTGCG 540
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CGAGGGGGAGGGCTTCACCGCGCCGACGCCTTTCCTCGACCGCGCCGCCACGGCCGTGCC 600
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CCGCACCCCGCCGGTGCCGGCGTTCGACCACCGTTCCATCGAGTTCGACGGAGGAGAAGC 660
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CGCCGCCGCCGGTGGCGGCAGGTCGTCCTACGCCGCCGTGTCCCTGGACAAGATCAAGGA 720
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CCTGACCGTGCACTTCACGGCGGAGTTCGTCGGCGAGCTCAAGGCCCGCGCCGGCGGCCG 780
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 GTGCAGCACGTTCCAGTGCCTGCTCGCGCACGTGTGGAAGAAGATCACGGCGGCGAGGGA 840
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CCTGAGCCCGGAGGAGTTCACGCAGGTGAGGGTGGCGGTGAACTGCCGGGGCAGAGCCAA 900
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 CCCGCCCGTGCCCATGGACTTCTTCGGCAACATGGTGCTCTGGGCGTTCCCGAGGATGCG 960
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 GGCGCGCGAGCTCCTCCGCGCCACCTACGGCGCCGTCGTGGGCGCCATCCGCGACGCCGT 1020
consensus_7192#1 -------------------------------GCCGTCGTGGGCGCCATCCGCGACGCCGT 29
*****************************
consensus_7192#0 GGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGC 1080
consensus_7192#1 GGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGC 89
************************************************************
consensus_7192#0 GGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTG 1140
consensus_7192#1 GGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTG 149
************************************************************
consensus_7192#0 CCCAGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCAC 1200
consensus_7192#1 CCCGGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCAC 209
*** ********************************************************
consensus_7192#0 CGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGT 1260
consensus_7192#1 CGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGT 269
************************************************************
consensus_7192#0 CCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGT 1320
consensus_7192#1 CCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGT 329
************************************************************
consensus_7192#0 CGAGGCGTTCGAGCGCATCATCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCC 1380
consensus_7192#1 CGAGGCGTTCGAGCGCATCGTCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCC 389
******************* ****************************************
consensus_7192#0 GTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTG 1440
consensus_7192#1 GTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTG 449
************************************************************
consensus_7192#0 CCCCAATTTAAGTGTAGTCGTGGTTTTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAA 1500
consensus_7192#1 TCCCAATTTAAGTGTAGTCG-GGTATTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAA 508
******************* *** ***********************************
consensus_7192#0 AAAATAGTTTCACATAAAGTAATATTCATGTTTTATCATATAATAACAATAAAAATACTA 1560
consensus_7192#1 AAAATAGTTTCACATT---NAAAANANNNNNNNNNNNNNNNANNNNNNATATANNTAATA 565
*************** ** * * *** * ** **
consensus_7192#0 ATCATAAAAGTTTTTACAAATAAGACAGATGGTAAATGTTGAACACAACCAATGCAAAAC 1620
consensus_7192#1 TNNAAAN----------------------------------------------------- 572
* *
consensus_7192#0 TGCAGTCTTCTGGGATGGAAGTAGTATAAAACTATGGCGTGCGGGTGGCAAACTGATGTG 1680
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 ATTAGCCACTTGTCTTTCCACGATGCTGTTTTCTCGAGCTTGTGTTGATGTTAAGCGTGA 1740
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 TTAGCCACAGTCTAATGTGCAAATTTGTTCTGTAAATATATATAAGATTGATGGCTTGAT 1800
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 GGGGAGAACAGCAAGTTTATGTACAGTGGAGTATGTAAGAGATATAAAACGAATATCTTG 1860
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 TATTTTGTGCTGGATGATTATGACTGTTCAGCATTGCTTATGACAAACGCATTACCCAAA 1920
consensus_7192#1 ------------------------------------------------------------
consensus_7192#0 GAATTAAAGTATAGAGGCGTTTTGAA 1946
consensus_7192#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||