These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2012 fasta sequence [CTTCTACATGCTCTTCAACCTCGGCCTCACCGCCTACCTCATCGGCAACATGACCAACCTCGTCGTTGAGGGCACCCGCCGTACCATGGAATTCAGGAACAGCATTCGTGCTGCCTCCAATTTCGTGGGCCGGAACCACCTGCCGCCTAGGCTGAAGCAGCAGATACTGGCCTACATGTGCCTCAAGTTCAGGGCAGAGAGCCTGAACCAGCAGCAGCTGATGGATCAGCTCCCCAAATCCATCTGCAAGGGCATCTGCGAGTACCTCTTCCTCCCCGTCGTCAAGGACGTCTACCTCTTCAAGGGTGTCTCAAGAGAAGTGCTCCTTCTCATGGTTACGAAGATGAAGCCGGAGTACATACCGCCGAAGGAGGACGTGATCGTGCAGAACGAGGCGCCGGACGACGTCTACATCGTGGTGTCCGGCGAGGTGGAGGTGATCTACTCCGACGGCGAAGCCGAGGAGCGGGTGGTGGCGACGCTGGGGACGAGGGGCGTGTTCGGCGAGGTGAGCGCGCTCAGCGACCGCCCGCAGAGCTTCACGCTGCGGACGCGGACGCTGTGCCAGCTGCTGCGCCTGCGCCAGGCCGCGCTCAAGGAGGCCATGCAGAGCAAGCCCGAGGACAGCGTCGTCATCATCAAGAACTTCCTCAAGCATCAGATCGAGATGCACGACATGAAGGTGGAGGACTTGCTCGGGGAGGACGCCGCCGGCGAGTACGACCACGGCAACATACCGTGCAATCTGCTGACGGTGGCAGCCACCGGGAACAGCAGCTTCCTTGAGGATCTCCTGAAAGTTGGAATGGATCCTGACGTCGGTGACTCCAAGGGAAGAACTGCACTGCATATAGCGGCATCGAAGGGGTACGAGGACTGCGTGCTGGTTCTCCTCAAGCAAGCGTGCAACGTAAACATCAAAGACGCGCAGGGCAACACGGCGCTGTGGAACGCCATCGCCGCGAGGCACCACAAGATCTTCAACATCCTGTACCACTTCGCGCGCGTCTCGAGCCCGCACCACGCCGCCGGCGACCTCCTCTGCCTCGCCGCGCGCCGGGGCGACCTCGACACGCTCCGGGAGCTCCTCAAGCACGGCCTCGCCGTCGACTCGGAGGACCGGGACGGCGCCACGGCGCTCCGCGTCGCGCTCGCCGAGGGCCACGCCGACGTCGCCAGGCTCCTCGTCCTCAACGGCGCCAGCGTCGACAGGGCGGCCAGCCACAACGAGCAGCAGGCGGCGGCGGCGGTGTCGGTCGACGAGCTGCGGGAGCTCATGAAGACGCGCGAGCTCGCGCACCCGGTCACCATCGTCGTCGACTCGCCGTCGCCGGCCGCCGCAGCCGTCATCCGGGAGGTCGGCTCGTCGGGGGACAGCCGGA-ATGGGCGGCGCCAGAGCGCGAGATCAGA-CGGCGCGCACTGGCCACGGGTGAGCATATACAGGGGCCATCCATT-CGTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCCCGGCA-CCAT-GGAAGAATTCAGAATCATCATAGAGGAGAAACTGAAAGTCGACGCGAGGAAGACGCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCGGGACAACGATAAGCTGTTCATAGTGACCGAGGAGCATATGACAGCAGTAGCATCGATGGACTCGGTGTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTAAAACTAGTCTCCCCAATCTGTTCCTTTTA-GGATTAACCGAAC-AAGCCTAATCAAGTTTTCTATTGGCGAC-ATCCCACAATGTGAGAAGTGCC-ATATAATTGAAGTGATTAATGGTTTTGTAGTGTATTGGATTAGGAGATAGATATGCCATAAACAGATTCACAATTGCTACTACCTCCGTTTCAAAATTGTACTCCATCTATTTTATATTATAAAACGTTTTGATTTTTTTTAAAAAA] [+] EMBL AK061594 [CTTCTACATGCTCTTCAACCTCGGCCTCACCGCCTACCTCATCGGCAACATGACCAACCTCGTCGTTGAGGGCACCCGCCGTACCATGGAATTCAGGAACAGCATTCGTGCTGCCTCCAATTTCGTGGGCCGGAACCACCTGCCGCCTAGGCTGAAGCAGCAGATACTGGCCTACATGTGCCTCAAGTTCAGGGCAGAGAGCCTGAACCAGCAGCAGCTGATGGATCAGCTCCCCAAATCCATCTGCAAGGGCATCTGCGAGTACCTCTTCCTCCCCGTCGTCAAGGACGTCTACCTCTTCAAGGGTGTCTCAAGAGAAGTGCTCCTTCTCATGGTTACGAAGATGAAGCCGGAGTACATACCGCCGAAGGAGGACGTGATCGTGCAGAACGAGGCGCCGGACGACGTCTACATCGTGGTGTCCGGCGAGGTGGAGGTGATCTACTCCGACGGCGAAGCCGAGGAGCGGGTGGTGGCGACGCTGGGGACGAGGGGCGTGTTCGGCGAGGTGAGCGCGCTCAGCGACCGCCCGCAGAGCTTCACGCTGCGGACGCGGACGCTGTGCCAGCTGCTGCGCCTGCGCCAGGCCGCGCTCAAGGAGGCCATGCAGAGCAAGCCCGAGGACAGCGTCGTCATCATCAAGAACTTCCTCAAGCATCAGATCGAGATGCACGACATGAAGGTGGAGGACTTGCTCGGGGAGGACGCCGCCGGCGAGTACGACCACGGCAACATACCGTGCAATCTGCTGACGGTGGCAGCCACCGGGAACAGCAGCTTCCTTGAGGATCTCCTGAAAGTTGGAATGGATCCTGACGTCGGTGACTCCAAGGGAAGAACTGCACTGCATATAGCGGCATCGAAGGGGTACGAGGACTGCGTGCTGGTTCTCCTCAAGCAAGCGTGCAACGTAAACATCAAAGACGCGCAGGGCAACACGGCGCTGTGGAACGCCATCGCCGCGAGGCACCACAAGATCTTCAACATCCTGTACCACTTCGCGCGCGTCTCGAGCCCGCACCACGCCGCCGGCGACCTCCTCTGCCTCGCCGCGCGCCGGGGCGACCTCGACACGCTCCGGGAGCTCCTCAAGCACGGCCTCGCCGTCGACTCGGAGGACCGGGACGGCGCCACGGCGCTCCGCGTCGCGCTCGCCGAGGGCCACGCCGACGTCGCCAGGCTCCTCGTCCTCAACGGCGCCAGCGTCGACAGGGCGGCCAGCCACAACGAGCAGCAGGCGGCGGCGGCGGTGTCGGTCGACGAGCTGCGGGAGCTCATGAAGACGCGCGAGCTCGCGCACCCGGTCACCATCGTCGTCGACTCGCCGTCGCCGGCCGCCGCAGCCGTCATCCGGGAGGTCGGCTCGTCGGGGGACAGCCGGA ATGGGCGGCGCCAGAGCGCGAGATCAGA CGGCGCGCACTGGCCACGGGTGAGCATATACAGGGGCCATCCATT CGTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCCCGGCA CCAT GGAAGAATTCAGAATCATCATAGAGGAGAAACTGAAAGTCGACGCGAGGAAGACGCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCGGGACAACGATAAGCTGTTCATAGTGACCGAGGAGCATATGACAGCAGTAGCATCGATGGACTCGGTGTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTAAAACTAGTCTCCCCAATCTGTTCCTTTTA GGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTG ] [+] EMBL BM037853 [ CGTC GGGGNCACCCGGAGAT GGCCGCCCCAGAGC CGAGATCAGAGCNGCGCGCACT GCCACGGGTGAGCATATACCGGGCCCATCCATTCCGTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCCCGGCACCCATGGGAAGAATTCAGAATCATCATAGAGGAGAAACTGAAAGTCGACGCGAGGAAGACCCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCGGGAC ACGATAAGCTGTTCATAGTGACCGAGGAGCATATGACA CAGTAGCATCGATGGACTCGGTGTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCAC ATAGGTGTAAAACTAGTCTCCCCAATCTGTTCCTTTTA GGATTAACCGAAC AAGCCTAATCAAGTTTTCTATTGGCGACAATCCCACAATGTGAGAAGTGCCAATATAATTGAAGTGATTAATGGTTTTGTAGTGTATTGGATTAGGAGATAGATATGCCATAAACAGATTCACAATTGCTACTACCTCCGTTTCAAAATTGTACTCCATCTATTTTATATTATAAAACGTTTTGATTTTTTTTAAAAAA] [+] EMBL BI795831 [ GAGCATATGACAGCAGTAGCATCGATGGACTCGGTGTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTAAAACTAGTCTCCCC ATCTGTTCCTTTTAGGGATTAACCGAAC AAGCCTAATCAAGTTTTCTATTGGCGAC ATCCAACAATGTGAGAAGTGCC ATATAATTGAAGTGATTAATGGTTTTGTAGAGTAaaaa ] consensusID : consensus_7196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [ATTCGGCACGAGTAGCACGATGGACCGGTGTTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTNAAACTAGTCTCCCCAATCTGTTCCTTTTAGGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTGGCGACAATCCAACAAATGTGAGAAGTGCC] [+] EMBL BE228338 [ATTCGGCACGAGTAGCACGATGGACCGGTGTTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTNAAACTAGTCTCCCCAATCTGTTCCTTTTAGGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTGGCGACAATCCAACAAATGTGAGAAGTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7196#0 CTTCTACATGCTCTTCAACCTCGGCCTCACCGCCTACCTCATCGGCAACATGACCAACCT 60 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CGTCGTTGAGGGCACCCGCCGTACCATGGAATTCAGGAACAGCATTCGTGCTGCCTCCAA 120 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 TTTCGTGGGCCGGAACCACCTGCCGCCTAGGCTGAAGCAGCAGATACTGGCCTACATGTG 180 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CCTCAAGTTCAGGGCAGAGAGCCTGAACCAGCAGCAGCTGATGGATCAGCTCCCCAAATC 240 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CATCTGCAAGGGCATCTGCGAGTACCTCTTCCTCCCCGTCGTCAAGGACGTCTACCTCTT 300 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CAAGGGTGTCTCAAGAGAAGTGCTCCTTCTCATGGTTACGAAGATGAAGCCGGAGTACAT 360 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 ACCGCCGAAGGAGGACGTGATCGTGCAGAACGAGGCGCCGGACGACGTCTACATCGTGGT 420 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 GTCCGGCGAGGTGGAGGTGATCTACTCCGACGGCGAAGCCGAGGAGCGGGTGGTGGCGAC 480 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 GCTGGGGACGAGGGGCGTGTTCGGCGAGGTGAGCGCGCTCAGCGACCGCCCGCAGAGCTT 540 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CACGCTGCGGACGCGGACGCTGTGCCAGCTGCTGCGCCTGCGCCAGGCCGCGCTCAAGGA 600 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 GGCCATGCAGAGCAAGCCCGAGGACAGCGTCGTCATCATCAAGAACTTCCTCAAGCATCA 660 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 GATCGAGATGCACGACATGAAGGTGGAGGACTTGCTCGGGGAGGACGCCGCCGGCGAGTA 720 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CGACCACGGCAACATACCGTGCAATCTGCTGACGGTGGCAGCCACCGGGAACAGCAGCTT 780 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CCTTGAGGATCTCCTGAAAGTTGGAATGGATCCTGACGTCGGTGACTCCAAGGGAAGAAC 840 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 TGCACTGCATATAGCGGCATCGAAGGGGTACGAGGACTGCGTGCTGGTTCTCCTCAAGCA 900 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 AGCGTGCAACGTAAACATCAAAGACGCGCAGGGCAACACGGCGCTGTGGAACGCCATCGC 960 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CGCGAGGCACCACAAGATCTTCAACATCCTGTACCACTTCGCGCGCGTCTCGAGCCCGCA 1020 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CCACGCCGCCGGCGACCTCCTCTGCCTCGCCGCGCGCCGGGGCGACCTCGACACGCTCCG 1080 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 GGAGCTCCTCAAGCACGGCCTCGCCGTCGACTCGGAGGACCGGGACGGCGCCACGGCGCT 1140 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CCGCGTCGCGCTCGCCGAGGGCCACGCCGACGTCGCCAGGCTCCTCGTCCTCAACGGCGC 1200 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CAGCGTCGACAGGGCGGCCAGCCACAACGAGCAGCAGGCGGCGGCGGCGGTGTCGGTCGA 1260 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CGAGCTGCGGGAGCTCATGAAGACGCGCGAGCTCGCGCACCCGGTCACCATCGTCGTCGA 1320 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CTCGCCGTCGCCGGCCGCCGCAGCCGTCATCCGGGAGGTCGGCTCGTCGGGGGACAGCCG 1380 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 GAATGGGCGGCGCCAGAGCGCGAGATCAGACGGCGCGCACTGGCCACGGGTGAGCATATA 1440 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CAGGGGCCATCCATTCGTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCC 1500 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CGGCACCATGGAAGAATTCAGAATCATCATAGAGGAGAAACTGAAAGTCGACGCGAGGAA 1560 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 GACGCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCGGGACAA 1620 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 CGATAAGCTGTTCATAGTGACCGAGGAGCATATGACAGCAGTAGCATCGATGGACTCGGT 1680 consensus_7196#1 -----------------------------ATTCGGCACGAGTAGCA-CGATGGAC-CGGT 29 ** * ** ******* ******** **** consensus_7196#0 GTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTT 1740 consensus_7196#1 GT-TGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTT 88 ** ********************************************************* consensus_7196#0 GAGTGGGAATGTTTTTGCATCACAATAGGTGTAAAACTAGTCTCCCCAATCTGTTCCTTT 1800 consensus_7196#1 GAGTGGGAATGTTTTTGCATCACAATAGGTGTNAAACTAGTCTCCCCAATCTGTTCCTTT 148 ******************************** *************************** consensus_7196#0 TAGGATTAACCGAACAA-GCCTAATCAAGTTTTCTATTGGCGACATCCCAC--AATGTGA 1857 consensus_7196#1 TAGGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTGGCGACAATCCAACAAATGTGA 208 ***************** *************************** *** ******* consensus_7196#0 GAAGTGCCATATAATTGAAGTGATTAATGGTTTTGTAGTGTATTGGATTAGGAGATAGAT 1917 consensus_7196#1 GAAGTGCC---------------------------------------------------- 216 ******** consensus_7196#0 ATGCCATAAACAGATTCACAATTGCTACTACCTCCGTTTCAAAATTGTACTCCATCTATT 1977 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 TTATATTATAAAACGTTTTGATTTTTTTTAAAAAA 2012 consensus_7196#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||