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Oryza sativa
cluster # 7202 cluster # 7202       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7202#0 length = 1301 sequences # 1  
consensus_7202#1 length = 673 sequences # 3  

consensusID : consensus_7202#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1301
fasta sequence
                              [GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGCAGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGGTCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGCTCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAATGTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGATGAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCAGAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGAGATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAGAGTTTGCCCCCTCGTCTGGAAGAGGGTATGATGAGCTTCTGTTATTTTTGCGGTGAGAAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT]

[+] EMBL AK103711             [GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGCAGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGGTCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGCTCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAATGTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGATGAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCAGAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGAGATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAGAGTTTGCCCCCTCGTCTGGAAGAGGGTATGATGAGCTTCTGTTATTTTTGCGGTGAGAAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT]


>consensus_7202#0 GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGT GAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAA TCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGG GTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGC AGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGG TCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGC TCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAAT GTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGAT GAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCA GAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGA GATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAG AGTTTGCCCCCTCGTCTGGAAGAGGGTATGATGAGCTTCTGTTATTTTTGCGGTGAGAAA CTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATGGAG TGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCACCT CCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATC AGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCA TGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACTGAT GAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCC TGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGA GTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCATTGA TCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAA TCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT



consensusID : consensus_7202#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 673
fasta sequence
                              [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA]

[-] EMBL CA760614             [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA]
[-] EMBL CA760638             [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA]
[-] EMBL CA760613             [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA]


>consensus_7202#1 GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGG CCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTT GTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCC GATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATC CAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTT AATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTC TGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGA ATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAA AGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCA TGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCA GAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAA AAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7202#0      GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGT 60
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      GAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAA 120
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      TCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGG 180
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      GTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGC 240
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      AGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGG 300
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      TCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGC 360
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      TCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAAT 420
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      GTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGAT 480
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      GAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCA 540
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      GAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGA 600
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      GATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAG 660
consensus_7202#1      --------------------------------------------GAG-ACAAGGGGGCTC 15
                                                                  *** *  ** * *   

consensus_7202#0      AGTTTGCCCCCTCGTCTGGAAGAG-GGTATGATGAGCTTCTGTTATTTTTGCGG--TGAG 717
consensus_7202#1      TTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTT 75
                            *******  ***   * * ***     * **    *          **  *   

consensus_7202#0      AAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATG 777
consensus_7202#1      GGACTTGTTGATGAGGGAGCTGCTGA---TTGTGAGTCAAGAACAGTTGTGAAGAGCATG 132
                        *** *  ** * *  **      *    * * **      * **   *    ******

consensus_7202#0      GAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCA 837
consensus_7202#1      GAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCA 192
                      ******************************************************* ****

consensus_7202#0      CCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGC 897
consensus_7202#1      CCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGC 252
                      ************************************************************

consensus_7202#0      ATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAG 957
consensus_7202#1      ATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAG 312
                      ************************************************************

consensus_7202#0      CCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACT 1017
consensus_7202#1      CCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCT 372
                      ********************************************************* **

consensus_7202#0      GATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGA 1077
consensus_7202#1      GATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGA 432
                      ************************************************************

consensus_7202#0      GCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTC 1137
consensus_7202#1      GCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTC 492
                      *********** ************************************************

consensus_7202#0      TGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCAT 1197
consensus_7202#1      TGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCAT 552
                      **************************************** *******************

consensus_7202#0      TGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGC 1257
consensus_7202#1      TGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGC 612
                      ************************************************************

consensus_7202#0      TAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT---------------- 1301
consensus_7202#1      TAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAA 672
                      ********************************************                

consensus_7202#0      -
consensus_7202#1      A 673
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)