These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1301 fasta sequence [GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGCAGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGGTCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGCTCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAATGTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGATGAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCAGAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGAGATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAGAGTTTGCCCCCTCGTCTGGAAGAGGGTATGATGAGCTTCTGTTATTTTTGCGGTGAGAAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT] [+] EMBL AK103711 [GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGCAGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGGTCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGCTCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAATGTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGATGAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCAGAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGAGATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAGAGTTTGCCCCCTCGTCTGGAAGAGGGTATGATGAGCTTCTGTTATTTTTGCGGTGAGAAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT] consensusID : consensus_7202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA] [-] EMBL CA760614 [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA] [-] EMBL CA760638 [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA] [-] EMBL CA760613 [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7202#0 GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGT 60 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 GAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAA 120 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 TCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGG 180 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 GTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGC 240 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 AGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGG 300 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 TCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGC 360 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 TCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAAT 420 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 GTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGAT 480 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 GAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCA 540 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 GAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGA 600 consensus_7202#1 ------------------------------------------------------------ consensus_7202#0 GATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAG 660 consensus_7202#1 --------------------------------------------GAG-ACAAGGGGGCTC 15 *** * ** * * consensus_7202#0 AGTTTGCCCCCTCGTCTGGAAGAG-GGTATGATGAGCTTCTGTTATTTTTGCGG--TGAG 717 consensus_7202#1 TTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTT 75 ******* *** * * *** * ** * ** * consensus_7202#0 AAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATG 777 consensus_7202#1 GGACTTGTTGATGAGGGAGCTGCTGA---TTGTGAGTCAAGAACAGTTGTGAAGAGCATG 132 *** * ** * * ** * * * ** * ** * ****** consensus_7202#0 GAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCA 837 consensus_7202#1 GAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCA 192 ******************************************************* **** consensus_7202#0 CCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGC 897 consensus_7202#1 CCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGC 252 ************************************************************ consensus_7202#0 ATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAG 957 consensus_7202#1 ATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAG 312 ************************************************************ consensus_7202#0 CCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACT 1017 consensus_7202#1 CCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCT 372 ********************************************************* ** consensus_7202#0 GATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGA 1077 consensus_7202#1 GATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGA 432 ************************************************************ consensus_7202#0 GCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTC 1137 consensus_7202#1 GCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTC 492 *********** ************************************************ consensus_7202#0 TGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCAT 1197 consensus_7202#1 TGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCAT 552 **************************************** ******************* consensus_7202#0 TGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGC 1257 consensus_7202#1 TGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGC 612 ************************************************************ consensus_7202#0 TAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT---------------- 1301 consensus_7202#1 TAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAA 672 ******************************************** consensus_7202#0 - consensus_7202#1 A 673 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||