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Oryza sativa
cluster # 7218 cluster # 7218       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7218#0 length = 2187 sequences # 2  
consensus_7218#1 length = 736 sequences # 1  
consensus_7218#2 length = 674 sequences # 1  

consensusID : consensus_7218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2187
fasta sequence
                              [TCGCTGGTGGTGGTGGTGGTTGGGGAGGAATTGCCCCCGTGCTTTGCTCCTCCTCCCATGGAGACCCCGCCCCCCGACCCCGTCTCGCCTCCGCCGCCCGCCGCCGACGAGGGCTCGCCGGGAGGCGACGACGGGGCGGAGGACGCGGGGGGGTTCAGCGCCGGGCTGGATTCGCTGTGGACGGCCCTGTTCGGCTCCCCGGAGGAGCTGGAGCCCATGTGGTCCCCGCCGAGGGGGTTCGGCGTGGGGGCCGAGTTCGCCGCGGCGGAGGTGGAGCCCGAGATCATGGACGTCGCGGGGGGCCCATGGGACGGCGCGCCCTGGAGGTCCTCCGGGGTCGTCGCCGGCGAGGGCGCGGCCACCGCGCTCGTTCCCCCCACGGCCGCCGCGGGGTTCGCGGAGTTCGAGCCCGCGGCGCCGATCGATTCGTATCCGGCGGGGGCGGCGGCGGCTTCGTTGGGCGACGTTCCTGAGGTGAGTGCGCTCGATTCCGGCGTTGATTGTTCGCCTGACCCGCCGCCATCGTCGTCTCCTCCGGTGGATTTTGATGCGCGGGGGTTTGACCCCGTCGCCGACTCCGCCCCGGCGATGGAGTCTCCACTACCGCCGTCTGTCGCTTCCTCGGAAGCCAATTTAGACGGGAGAATGCTCGATTGTACGCTCAACTCCGTGCCATCGCCACCTCTTGCTTCCCCATATGAGGTCGGTTTGGGGGCTGAGGATCCTATCAAGGATTCTTCCCCTTCGGTTGCTTGGGGAACAACCATGGATGCGAAGGATCCCGAGGTGGATGCTACTTGTGCAAATGGTACAGCTCTGCGGAGATCACGGAGGATCATGAAAATCAAGTCAGCGGCGAGCTCCATGCCTTTGAATCAGAATGGAGACTCATCTAGAGCTTCCAAGCGACGAGTTGCGGATTCAAGGAAGAGTAGAAGCAGTGAAGGGAGCAAACTCCCTGCGTTCACAGGGCCAATTTCAGTAAACACAGTTGATTTGATTAACGGGGTGAAGGTTCAAGGATTGCAAGAAATTGTTGCCGTGGAAAACGTAAGTTCCTCTTACGACAATAATCAGAAAGCAGGTGGTCTCTACAATCAGGTTGTGGTGGCTTTACCAGCAGCGAGTAATAGTTTGTTGAAAGACAAAGGAGCTTCTGTTCTTCCTCGAAGGAAGACTAGGTTAGCCTCAAAGGTATTGGTGAATTCAGACAGGGTGTCAGCTATATCACCAGTGGTAAATGGTGGACCTCCTGTGCAGAAATCAGATGTTTGTATACCTACTAAAAAGCATAAGCTTGCTGTTGAAGAGTGCTTGACAAGTCTGGATGGAGTGGATGGTGGTGGTATTGTGTTGTGCAACTCAAAGTTGAAAAGTGCAAAATCACGGGTGGTCAGCAAGACGCCTCAAGGGAGAGGAAGAAGATCCCCTCAACCTCCAAAGACACAGAGGGCCAGGACGTTGTCGGTTAAATACTTGGAAAAATTAAAGAGGGCAGAAAACAATAATAATAATGGCTCAATGTCCAAATCACCAAGAGTTCCAATGATACCAGAAAATAATGGCTCAATGTCCAAATCACCAAGAGTTCCAATAATACCAGAACTGAGCACTAAGCACGAACTTGTTTTGGACAAGCACATGGTTGATTCAGTGATGTTGGAAACGGACGATGGTTCCTGTTTCTTTGTGGGGGATGCAGTTCCTGATGATGAGGCTAGGAAGCAGTGGCCTCACCGTTACGAAATAAATGATCAAATCATGAAAAAGGTATGCACGTGATTTGGCTGGTTTGCTGCTCTCTGCATGACTTCATCGCCATATTTCTGTAGCAATATAACAATAAGATGTGGACTATTGCAGATTAGTTAAATAGATATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAGGAGTTCTCTTTGAAATATCTATTCATGTCTTTGTCACGGAAGTACATGCAATACAATAGTGAGAACTGCTGATTCGTGCAGATACAATTCAGGGAGTAGTTTGTATTCCTAACAATAATGTTCAAGCATGGAAGGAAGTGTCAGAAAGCATAGATGTGAAATGGGTAAACATGTAATTGTTTGCACATTCATTTTACTATAGTACATGTTAGAACATAAAAATTGTATGGTGGATATAAATACAAGTATATGACTATATTAATAAACTTGTT]

[+] EMBL AK109728             [TCGCTGGTGGTGGTGGTGGTTGGGGAGGAATTGCCCCCGTGCTTTGCTCCTCCTCCCATGGAGACCCCGCCCCCCGACCCCGTCTCGCCTCCGCCGCCCGCCGCCGACGAGGGCTCGCCGGGAGGCGACGACGGGGCGGAGGACGCGGGGGGGTTCAGCGCCGGGCTGGATTCGCTGTGGACGGCCCTGTTCGGCTCCCCGGAGGAGCTGGAGCCCATGTGGTCCCCGCCGAGGGGGTTCGGCGTGGGGGCCGAGTTCGCCGCGGCGGAGGTGGAGCCCGAGATCATGGACGTCGCGGGGGGCCCATGGGACGGCGCGCCCTGGAGGTCCTCCGGGGTCGTCGCCGGCGAGGGCGCGGCCACCGCGCTCGTTCCCCCCACGGCCGCCGCGGGGTTCGCGGAGTTCGAGCCCGCGGCGCCGATCGATTCGTATCCGGCGGGGGCGGCGGCGGCTTCGTTGGGCGACGTTCCTGAGGTGAGTGCGCTCGATTCCGGCGTTGATTGTTCGCCTGACCCGCCGCCATCGTCGTCTCCTCCGGTGGATTTTGATGCGCGGGGGTTTGACCCCGTCGCCGACTCCGCCCCGGCGATGGAGTCTCCACTACCGCCGTCTGTCGCTTCCTCGGAAGCCAATTTAGACGGGAGAATGCTCGATTGTACGCTCAACTCCGTGCCATCGCCACCTCTTGCTTCCCCATATGAGGTCGGTTTGGGGGCTGAGGATCCTATCAAGGATTCTTCCCCTTCGGTTGCTTGGGGAACAACCATGGATGCGAAGGATCCCGAGGTGGATGCTACTTGTGCAAATGGTACAGCTCTGCGGAGATCACGGAGGATCATGAAAATCAAGTCAGCGGCGAGCTCCATGCCTTTGAATCAGAATGGAGACTCATCTAGAGCTTCCAAGCGACGAGTTGCGGATTCAAGGAAGAGTAGAAGCAGTGAAGGGAGCAAACTCCCTGCGTTCACAGGGCCAATTTCAGTAAACACAGTTGATTTGATTAACGGGGTGAAGGTTCAAGGATTGCAAGAAATTGTTGCCGTGGAAAACGTAAGTTCCTCTTACGACAATAATCAGAAAGCAGGTGGTCTCTACAATCAGGTTGTGGTGGCTTTACCAGCAGCGAGTAATAGTTTGTTGAAAGACAAAGGAGCTTCTGTTCTTCCTCGAAGGAAGACTAGGTTAGCCTCAAAGGTATTGGTGAATTCAGACAGGGTGTCAGCTATATCACCAGTGGTAAATGGTGGACCTCCTGTGCAGAAATCAGATGTTTGTATACCTACTAAAAAGCATAAGCTTGCTGTTGAAGAGTGCTTGACAAGTCTGGATGGAGTGGATGGTGGTGGTATTGTGTTGTGCAACTCAAAGTTGAAAAGTGCAAAATCACGGGTGGTCAGCAAGACGCCTCAAGGGAGAGGAAGAAGATCCCCTCAACCTCCAAAGACACAGAGGGCCAGGACGTTGTCGGTTAAATACTTGGAAAAATTAAAGAGGGCAGAAAACAATAATAATAATGGCTCAATGTCCAAATCACCAAGAGTTCCAATGATACCAGAAAATAATGGCTCAATGTCCAAATCACCAAGAGTTCCAATAATACCAGAACTGAGCACTAAGCACGAACTTGTTTTGGACAAGCACATGGTTGATTCAGTGATGTTGGAAACGGACGATGGTTCCTGTTTCTTTGTGGGGGATGCAGTTCCTGATGATGAGGCTAGGAAGCAGTGGCCTCACCGTTACGAAATAAATGATCAAATCATGAAAAAGGTATGCACGTGATTTGGCTGGTTTGCTGCTCTCTGCATGACTTCATCGCCATATTTCTGTAGCAATATAACAATAAGATGTGGACTATTGCAGATTAGTTAAATAGATATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAGGAGTTCTCTTTGAAATATCTATTCATGTCTTTGTCACGGAAGTACATGCAATACAATAGTGAGAACTGCTGATTCGTGCAGATACAATTCAGGGAGTAGTTTGTATTCCTAACAATAATGTTCAAGCATGGAAGGAAGTGTCAGAAAGCATAGATGTGAAATGGGTAAACATGTAATTGTTTGCACATTCATTTTACTATAGTACATGTTAGAACATAAAAATTGTATGGTGGATATAAATACAAGTATATGACTATATTAATAAACTTGTT]
[+] EMBL CF306902             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCGGTTGCTTGGGGAACAACCATGGATGCGAAGGATCCCGAGGTGGATGCTACTTGTGCAAATGGTACAGCTCTGCGGAGATCACGGAGGATCATGAAAATCAAGTCAGCGGCGAGCTCCATGCCTTTGAATCAGAATGGAGACTCATCTAGAGCTTCCAAGCGACGAGTTGCGGATTCAAGGAAGAGTAGAAGCAGTGAAGGGAGCAAACTCCCTGCGTTCACAGGGCCAATTTCAGTAAACACAGTTGATTTGATTAACGGGGTGAAGGTTCAAGGATTGCAAGAAATTGTTGCCGTGGAAAACGTAAGTTCCTCTTACGACAATAATCAGAAAGCAGGTGGTCTCTACAATCAGGTTGTGGTGGCTTTACCAGCAGCGAGTAATAGTTTGTTGAAAGACAAAGGAGCTTCTGTTCTTCCTCGAAGGAAGACTAGGTTAGCCTCAAAGGTATTGGTGAATTCAGACAGGGTGTCAGCTATATCACCAGTGGTAAATGGTGGACCTCCTGTGCAGAAATCAGATGTTTGTATACCTACTAAAAAGCATAAGCTTGCTGTTGAAGAGTGCTTGACAAGTCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_7218#0 TCGCTGGTGGTGGTGGTGGTTGGGGAGGAATTGCCCCCGTGCTTTGCTCCTCCTCCCATG GAGACCCCGCCCCCCGACCCCGTCTCGCCTCCGCCGCCCGCCGCCGACGAGGGCTCGCCG GGAGGCGACGACGGGGCGGAGGACGCGGGGGGGTTCAGCGCCGGGCTGGATTCGCTGTGG ACGGCCCTGTTCGGCTCCCCGGAGGAGCTGGAGCCCATGTGGTCCCCGCCGAGGGGGTTC GGCGTGGGGGCCGAGTTCGCCGCGGCGGAGGTGGAGCCCGAGATCATGGACGTCGCGGGG GGCCCATGGGACGGCGCGCCCTGGAGGTCCTCCGGGGTCGTCGCCGGCGAGGGCGCGGCC ACCGCGCTCGTTCCCCCCACGGCCGCCGCGGGGTTCGCGGAGTTCGAGCCCGCGGCGCCG ATCGATTCGTATCCGGCGGGGGCGGCGGCGGCTTCGTTGGGCGACGTTCCTGAGGTGAGT GCGCTCGATTCCGGCGTTGATTGTTCGCCTGACCCGCCGCCATCGTCGTCTCCTCCGGTG GATTTTGATGCGCGGGGGTTTGACCCCGTCGCCGACTCCGCCCCGGCGATGGAGTCTCCA CTACCGCCGTCTGTCGCTTCCTCGGAAGCCAATTTAGACGGGAGAATGCTCGATTGTACG CTCAACTCCGTGCCATCGCCACCTCTTGCTTCCCCATATGAGGTCGGTTTGGGGGCTGAG GATCCTATCAAGGATTCTTCCCCTTCGGTTGCTTGGGGAACAACCATGGATGCGAAGGAT CCCGAGGTGGATGCTACTTGTGCAAATGGTACAGCTCTGCGGAGATCACGGAGGATCATG AAAATCAAGTCAGCGGCGAGCTCCATGCCTTTGAATCAGAATGGAGACTCATCTAGAGCT TCCAAGCGACGAGTTGCGGATTCAAGGAAGAGTAGAAGCAGTGAAGGGAGCAAACTCCCT GCGTTCACAGGGCCAATTTCAGTAAACACAGTTGATTTGATTAACGGGGTGAAGGTTCAA GGATTGCAAGAAATTGTTGCCGTGGAAAACGTAAGTTCCTCTTACGACAATAATCAGAAA GCAGGTGGTCTCTACAATCAGGTTGTGGTGGCTTTACCAGCAGCGAGTAATAGTTTGTTG AAAGACAAAGGAGCTTCTGTTCTTCCTCGAAGGAAGACTAGGTTAGCCTCAAAGGTATTG GTGAATTCAGACAGGGTGTCAGCTATATCACCAGTGGTAAATGGTGGACCTCCTGTGCAG AAATCAGATGTTTGTATACCTACTAAAAAGCATAAGCTTGCTGTTGAAGAGTGCTTGACA AGTCTGGATGGAGTGGATGGTGGTGGTATTGTGTTGTGCAACTCAAAGTTGAAAAGTGCA AAATCACGGGTGGTCAGCAAGACGCCTCAAGGGAGAGGAAGAAGATCCCCTCAACCTCCA AAGACACAGAGGGCCAGGACGTTGTCGGTTAAATACTTGGAAAAATTAAAGAGGGCAGAA AACAATAATAATAATGGCTCAATGTCCAAATCACCAAGAGTTCCAATGATACCAGAAAAT AATGGCTCAATGTCCAAATCACCAAGAGTTCCAATAATACCAGAACTGAGCACTAAGCAC GAACTTGTTTTGGACAAGCACATGGTTGATTCAGTGATGTTGGAAACGGACGATGGTTCC TGTTTCTTTGTGGGGGATGCAGTTCCTGATGATGAGGCTAGGAAGCAGTGGCCTCACCGT TACGAAATAAATGATCAAATCATGAAAAAGGTATGCACGTGATTTGGCTGGTTTGCTGCT CTCTGCATGACTTCATCGCCATATTTCTGTAGCAATATAACAATAAGATGTGGACTATTG CAGATTAGTTAAATAGATATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAGGAGTT CTCTTTGAAATATCTATTCATGTCTTTGTCACGGAAGTACATGCAATACAATAGTGAGAA CTGCTGATTCGTGCAGATACAATTCAGGGAGTAGTTTGTATTCCTAACAATAATGTTCAA GCATGGAAGGAAGTGTCAGAAAGCATAGATGTGAAATGGGTAAACATGTAATTGTTTGCA CATTCATTTTACTATAGTACATGTTAGAACATAAAAATTGTATGGTGGATATAAATACAA GTATATGACTATATTAATAAACTTGTT



consensusID : consensus_7218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 736
fasta sequence
                              [CTGTCGCTTCCTCGGAAGCCAATTTAGACGGGAGAATGCTCGATTGTACGCTCAACTCCATGCCTTTGAATCAGAATGGAGACTCATCTAGAGCTTCCAAGCGACGAGTTGCGGATTCAAGGAAGAGTAGAAGCAGTGAAGGGAGCAAACTCCCTGCGTTCACAGGGCCAATTTCAGTAAACACAGTTGATTTGATTAACGGGGTGAAGGTTCAAGGATTGCAAGAAATTGTTGCCGTGGAAAACGTAAGTTCCTCTTACGACAATAATCAGAAAGCAGGTGGTCTCTACAATCAGGTTGTGGTGGCTTTACCAGCAGCGAGTAATAGTTTGTTGAAAGACAAAGGAGCTTCTGTTCTTCCTCGAAGGAAGACTAGGTTAGCCTCAAAGGTATTGGTGAATTCAGACAGGGTGTCAGCTATATCACCAGTGGTAAATGGTGGACCTCCTGTGCAGAAATCAGATGTTTGTATACCTACTAAAAAGCATAAGCTTGCTGTTGAAGAGTGCTTGACAAGTCTGGATGGAGTGGATGGTGGTGGTATTGTGTTGTGCAACTCAAAGTTGAAAAGTGCAAAATCACGAGTGGTCAGCAAGACGCCTCAAGGGAGAGGAAGAAGATCCCCTCAACCTCCAAAGACACAGAGGGCCAGGACGTTGTCGGTTAAATACTNTGGAAAATTAAAGAGGGCAGAAAACAATAATAATAATGGCTCAATGTCCAAATCACCAAGAGT]

[+] EMBL CB677719             [CTGTCGCTTCCTCGGAAGCCAATTTAGACGGGAGAATGCTCGATTGTACGCTCAACTCCATGCCTTTGAATCAGAATGGAGACTCATCTAGAGCTTCCAAGCGACGAGTTGCGGATTCAAGGAAGAGTAGAAGCAGTGAAGGGAGCAAACTCCCTGCGTTCACAGGGCCAATTTCAGTAAACACAGTTGATTTGATTAACGGGGTGAAGGTTCAAGGATTGCAAGAAATTGTTGCCGTGGAAAACGTAAGTTCCTCTTACGACAATAATCAGAAAGCAGGTGGTCTCTACAATCAGGTTGTGGTGGCTTTACCAGCAGCGAGTAATAGTTTGTTGAAAGACAAAGGAGCTTCTGTTCTTCCTCGAAGGAAGACTAGGTTAGCCTCAAAGGTATTGGTGAATTCAGACAGGGTGTCAGCTATATCACCAGTGGTAAATGGTGGACCTCCTGTGCAGAAATCAGATGTTTGTATACCTACTAAAAAGCATAAGCTTGCTGTTGAAGAGTGCTTGACAAGTCTGGATGGAGTGGATGGTGGTGGTATTGTGTTGTGCAACTCAAAGTTGAAAAGTGCAAAATCACGAGTGGTCAGCAAGACGCCTCAAGGGAGAGGAAGAAGATCCCCTCAACCTCCAAAGACACAGAGGGCCAGGACGTTGTCGGTTAAATACTNTGGAAAATTAAAGAGGGCAGAAAACAATAATAATAATGGCTCAATGTCCAAATCACCAAGAGT]


>consensus_7218#1 CTGTCGCTTCCTCGGAAGCCAATTTAGACGGGAGAATGCTCGATTGTACGCTCAACTCCA TGCCTTTGAATCAGAATGGAGACTCATCTAGAGCTTCCAAGCGACGAGTTGCGGATTCAA GGAAGAGTAGAAGCAGTGAAGGGAGCAAACTCCCTGCGTTCACAGGGCCAATTTCAGTAA ACACAGTTGATTTGATTAACGGGGTGAAGGTTCAAGGATTGCAAGAAATTGTTGCCGTGG AAAACGTAAGTTCCTCTTACGACAATAATCAGAAAGCAGGTGGTCTCTACAATCAGGTTG TGGTGGCTTTACCAGCAGCGAGTAATAGTTTGTTGAAAGACAAAGGAGCTTCTGTTCTTC CTCGAAGGAAGACTAGGTTAGCCTCAAAGGTATTGGTGAATTCAGACAGGGTGTCAGCTA TATCACCAGTGGTAAATGGTGGACCTCCTGTGCAGAAATCAGATGTTTGTATACCTACTA AAAAGCATAAGCTTGCTGTTGAAGAGTGCTTGACAAGTCTGGATGGAGTGGATGGTGGTG GTATTGTGTTGTGCAACTCAAAGTTGAAAAGTGCAAAATCACGAGTGGTCAGCAAGACGC CTCAAGGGAGAGGAAGAAGATCCCCTCAACCTCCAAAGACACAGAGGGCCAGGACGTTGT CGGTTAAATACTNTGGAAAATTAAAGAGGGCAGAAAACAATAATAATAATGGCTCAATGT CCAAATCACCAAGAGT



consensusID : consensus_7218#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence
                              [TCAATGTCCAAATCACCAAGAGTTCCAATGATACCAGAAAATAATGGCTCAATGTCCAAATCACCAAGAGTTCCAATAATACCAGAACTGAGCACTAAGCACGAACTTGTTTTGGACAAGCACATGGTTGATTCAGTGATGTTGGAAACGGACGATGGTTCCTGTTTCTTTGTGGGGGATGCAGTTCCTGATGATGAGGCTAGGAAGCAGTGGCCTCACCGTTACGAAATAAATGATCAAATCATGAAAAAGGTATGCACATGATTTGGCTGGTTTGCTGCTCTCTGCATGACTTCATCGCCATATTTCTGTAGCAATATAACAATAAGATGTGGACTATTGCAGCTTAGTTAAATAGATATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAGGAGTTCTCTTTGAAATATCTATTCATGTCTTTGTCACGGAAGTACATGCAATACAATAGTGAGAACTGCTGATTCGTGCAGATACAATTCAGGGAGTAGTTTGTATTCCTAACAATAATGTTCAAGCATGGAAGGAAGTGTCAGAAAGCATAGATGTGAAATGGGTAAACATGTAATTGTTTGCACATTCATTTTACTATAGTACATGTTAGAACATAAAAATTGTATGGTGGATATAAATACAAGTATATGACTATATTAATAAAAAAAAAGAAAA]

[-] EMBL CA760517             [TCAATGTCCAAATCACCAAGAGTTCCAATGATACCAGAAAATAATGGCTCAATGTCCAAATCACCAAGAGTTCCAATAATACCAGAACTGAGCACTAAGCACGAACTTGTTTTGGACAAGCACATGGTTGATTCAGTGATGTTGGAAACGGACGATGGTTCCTGTTTCTTTGTGGGGGATGCAGTTCCTGATGATGAGGCTAGGAAGCAGTGGCCTCACCGTTACGAAATAAATGATCAAATCATGAAAAAGGTATGCACATGATTTGGCTGGTTTGCTGCTCTCTGCATGACTTCATCGCCATATTTCTGTAGCAATATAACAATAAGATGTGGACTATTGCAGCTTAGTTAAATAGATATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAGGAGTTCTCTTTGAAATATCTATTCATGTCTTTGTCACGGAAGTACATGCAATACAATAGTGAGAACTGCTGATTCGTGCAGATACAATTCAGGGAGTAGTTTGTATTCCTAACAATAATGTTCAAGCATGGAAGGAAGTGTCAGAAAGCATAGATGTGAAATGGGTAAACATGTAATTGTTTGCACATTCATTTTACTATAGTACATGTTAGAACATAAAAATTGTATGGTGGATATAAATACAAGTATATGACTATATTAATAAAAAAAAAGAAAA]


>consensus_7218#2 TCAATGTCCAAATCACCAAGAGTTCCAATGATACCAGAAAATAATGGCTCAATGTCCAAA TCACCAAGAGTTCCAATAATACCAGAACTGAGCACTAAGCACGAACTTGTTTTGGACAAG CACATGGTTGATTCAGTGATGTTGGAAACGGACGATGGTTCCTGTTTCTTTGTGGGGGAT GCAGTTCCTGATGATGAGGCTAGGAAGCAGTGGCCTCACCGTTACGAAATAAATGATCAA ATCATGAAAAAGGTATGCACATGATTTGGCTGGTTTGCTGCTCTCTGCATGACTTCATCG CCATATTTCTGTAGCAATATAACAATAAGATGTGGACTATTGCAGCTTAGTTAAATAGAT ATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAGGAGTTCTCTTTGAAATATCTATT CATGTCTTTGTCACGGAAGTACATGCAATACAATAGTGAGAACTGCTGATTCGTGCAGAT ACAATTCAGGGAGTAGTTTGTATTCCTAACAATAATGTTCAAGCATGGAAGGAAGTGTCA GAAAGCATAGATGTGAAATGGGTAAACATGTAATTGTTTGCACATTCATTTTACTATAGT ACATGTTAGAACATAAAAATTGTATGGTGGATATAAATACAAGTATATGACTATATTAAT AAAAAAAAAGAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7218#0      TCGCTGGTGGTGGTGGTGGTTGGGGAGGAATTGCCCCCGTGCTTTGCTCCTCCTCCCATG 60
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GAGACCCCGCCCCCCGACCCCGTCTCGCCTCCGCCGCCCGCCGCCGACGAGGGCTCGCCG 120
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GGAGGCGACGACGGGGCGGAGGACGCGGGGGGGTTCAGCGCCGGGCTGGATTCGCTGTGG 180
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      ACGGCCCTGTTCGGCTCCCCGGAGGAGCTGGAGCCCATGTGGTCCCCGCCGAGGGGGTTC 240
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GGCGTGGGGGCCGAGTTCGCCGCGGCGGAGGTGGAGCCCGAGATCATGGACGTCGCGGGG 300
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GGCCCATGGGACGGCGCGCCCTGGAGGTCCTCCGGGGTCGTCGCCGGCGAGGGCGCGGCC 360
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      ACCGCGCTCGTTCCCCCCACGGCCGCCGCGGGGTTCGCGGAGTTCGAGCCCGCGGCGCCG 420
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      ATCGATTCGTATCCGGCGGGGGCGGCGGCGGCTTCGTTGGGCGACGTTCCTGAGGTGAGT 480
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GCGCTCGATTCCGGCGTTGATTGTTCGCCTGACCCGCCGCCATCGTCGTCTCCTCCGGTG 540
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GATTTTGATGCGCGGGGGTTTGACCCCGTCGCCGACTCCGCCCCGGCGATGGAGTCTCCA 600
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      CTACCGCCGTCTGTCGCTTCCTCGGAAGCCAATTTAGACGGGAGAATGCTCGATTGTACG 660
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      CTCAACTCCGTGCCATCGCCACCTCTTGCTTCCCCATATGAGGTCGGTTTGGGGGCTGAG 720
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GATCCTATCAAGGATTCTTCCCCTTCGGTTGCTTGGGGAACAACCATGGATGCGAAGGAT 780
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      CCCGAGGTGGATGCTACTTGTGCAAATGGTACAGCTCTGCGGAGATCACGGAGGATCATG 840
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      AAAATCAAGTCAGCGGCGAGCTCCATGCCTTTGAATCAGAATGGAGACTCATCTAGAGCT 900
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      TCCAAGCGACGAGTTGCGGATTCAAGGAAGAGTAGAAGCAGTGAAGGGAGCAAACTCCCT 960
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GCGTTCACAGGGCCAATTTCAGTAAACACAGTTGATTTGATTAACGGGGTGAAGGTTCAA 1020
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GGATTGCAAGAAATTGTTGCCGTGGAAAACGTAAGTTCCTCTTACGACAATAATCAGAAA 1080
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GCAGGTGGTCTCTACAATCAGGTTGTGGTGGCTTTACCAGCAGCGAGTAATAGTTTGTTG 1140
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      AAAGACAAAGGAGCTTCTGTTCTTCCTCGAAGGAAGACTAGGTTAGCCTCAAAGGTATTG 1200
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      GTGAATTCAGACAGGGTGTCAGCTATATCACCAGTGGTAAATGGTGGACCTCCTGTGCAG 1260
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      AAATCAGATGTTTGTATACCTACTAAAAAGCATAAGCTTGCTGTTGAAGAGTGCTTGACA 1320
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      AGTCTGGATGGAGTGGATGGTGGTGGTATTGTGTTGTGCAACTCAAAGTTGAAAAGTGCA 1380
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      AAATCACGGGTGGTCAGCAAGACGCCTCAAGGGAGAGGAAGAAGATCCCCTCAACCTCCA 1440
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      AAGACACAGAGGGCCAGGACGTTGTCGGTTAAATACTTGGAAAAATTAAAGAGGGCAGAA 1500
consensus_7218#2      ------------------------------------------------------------
consensus_7218#1      ------------------------------------------------------------
                                                                                  

consensus_7218#0      AACAATAATAATAATGGCTCAATGTCCAAATCACCAAGAGTTCCAATGATACCAGAAAAT 1560
consensus_7218#2      ------------------TCAATGTCCAAATCACCAAGAGTTCCAATGATACCAGAAAAT 42
consensus_7218#1      ---------------------CTGTC--GCTTCCTCGGAAGCCAATTTAGACGGGAGAAT 37
                                            ****    *  *   **   * * * * **  ** ***

consensus_7218#0      AATGGCTCA-ATGTCCAAATCACCAAGAGTTCCAATAATACCAGA-----ACTGAGCACT 1614
consensus_7218#2      AATGGCTCA-ATGTCCAAATCACCAAGAGTTCCAATAATACCAGA-----ACTGAGCACT 96
consensus_7218#1      GCTCGATTGTACGCTCAACT--CCATGCCTTTGAATCAGAATGGAGACTCATCTAGAGCT 95
                        * * *   * *  *** *  *** *  **  *** * *   **     *   **  **

consensus_7218#0      AAGCACGAACTTGTTTTGGA--CAAGCACATGGTTGATTCAGTGATGTTGG-AAACGGAC 1671
consensus_7218#2      AAGCACGAACTTGTTTTGGA--CAAGCACATGGTTGATTCAGTGATGTTGG-AAACGGAC 153
consensus_7218#1      TCCAAGCGACGAGTTGCGGATTCAAGGA-AGAGTAGAAGCAGTGAAGGGAGCAAACTCCC 154
                          *   **  ***  ***  **** * *  ** **  ****** *   * ****   *

consensus_7218#0      GATGGTTCCTGTTTCT-TTGTGGGGGATGCAGTT--CCTGAT-GATGAGGCTAGGAAGCA 1727
consensus_7218#2      GATGGTTCCTGTTTCT-TTGTGGGGGATGCAGTT--CCTGAT-GATGAGGCTAGGAAGCA 209
consensus_7218#1      TGCGTTCACAGGGCCAATTTCAGTAAACACAGTTGATTTGATTAACGGGGTGAAGGTTCA 214
                         * *  * *   *  **   *   *  *****    ****  * * **  * *   **

consensus_7218#0      GTGGCCTCA-----CCGTTACGAAATAAATGATCAAATCATGAAAAAGGTATGCACGTGA 1782
consensus_7218#2      GTGGCCTCA-----CCGTTACGAAATAAATGATCAAATCATGAAAAAGGTATGCACATGA 264
consensus_7218#1      AGGATTGCAAGAAATTGTTGCCGTGGAAAACGTAAGTTCCTCTTACGACAATAATCAGAA 274
                        *    **       *** *     ***   * *  ** *   *     **   *   *

consensus_7218#0      TTTGGCTGGTTTGCTGCTCTCTGC-----ATGACTTCATCGCCA-----TATT--TCTGT 1830
consensus_7218#2      TTTGGCTGGTTTGCTGCTCTCTGC-----ATGACTTCATCGCCA-----TATT--TCTGT 312
consensus_7218#1      AGCAGGTGGTCT-CTACAATCAGGTTGTGGTGGCTTTACCAGCAGCGAGTAATAGTTTGT 333
                          * **** * ** *  ** *       ** *** * *  **     ** *  * ***

consensus_7218#0      AGCAATATAACAA---------------TAAGATGTGGACTATTGCAGATT---AGTTAA 1872
consensus_7218#2      AGCAATATAACAA---------------TAAGATGTGGACTATTGCAGCTT---AGTTAA 354
consensus_7218#1      TGAAAGACAAAGGAGCTTCTGTTCTTCCTCGAAGGAAGACTAGGTTAGCCTCAAAGGTAT 393
                       * ** * **                  *   * *  *****    **  *   ** ** 

consensus_7218#0      ATAGATATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAG-----GAGTTCTCTTTG 1927
consensus_7218#2      ATAGATATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAG-----GAGTTCTCTTTG 409
consensus_7218#1      TGGTGAATTCAGACAGGGTGTCAGC-TATATCACCAGTGGTAAATGGTGGACCTCCTGTG 452
                            ** **   **    **  * *** ** * **  ***      *      ** **

consensus_7218#0      AAATATCTATTCATGTCTTTGTC-ACGGAAGTACATGCAATACAATAGTGAGAACTGCT- 1985
consensus_7218#2      AAATATCTATTCATGTCTTTGTC-ACGGAAGTACATGCAATACAATAGTGAGAACTGCT- 467
consensus_7218#1      CAGAAATCAGATGTTTGTATACCTACTAAAAAGCATA-AGCTTGCTGTTGAAGAGTGCTT 511
                       *  *   *    * * * *  * **  **   ***  *      *  ***  * **** 

consensus_7218#0      GATTCGTGCAGATACAATTCAGGG-AGTAGT-TTGTATTCCTAACAATAATGTTCAAGCA 2043
consensus_7218#2      GATTCGTGCAGATACAATTCAGGG-AGTAGT-TTGTATTCCTAACAATAATGTTCAAGCA 525
consensus_7218#1      GACAAGTCTGGATGGAGTGGATGGTGGTGGTATTGTGTTGTGCAACTCAAAGTTGAAAAG 571
                      **   **   ***  * *  * **  ** ** **** **    *    ** *** **   

consensus_7218#0      TGGAAGGAAGTGT-CAGAAAGCATAGATGTGAAATGGGTAAACATGTA-ATTGTTTGCAC 2101
consensus_7218#2      TGGAAGGAAGTGT-CAGAAAGCATAGATGTGAAATGGGTAAACATGTA-ATTGTTTGCAC 583
consensus_7218#1      TGCAAAATCACGAGTGGTCAGCA-AGACGCCTCAAGGGAGAGGAAGAAGATCCCCTCAAC 630
                      ** **      *    *  **** *** *    * ***  *  * * * **    *  **

consensus_7218#0      ATTCATTTTACTATAGTAC----ATGTTAGAACATAAAAATTGTATGGTGGATATAAATA 2157
consensus_7218#2      ATTCATTTTACTATAGTAC----ATGTTAGAACATAAAAATTGTATGGTGGATATAAATA 639
consensus_7218#1      CTCCAAAGACACAGAGGGCCAGGACGTTGTCGGTTAAATACTNTG-GAAAATTAAAGAGG 689
                       * **       * **  *    * ***      **** * * *  *     ** * *  

consensus_7218#0      CAAGTATATGACTATATTAATAAACTTGTT----------------- 2187
consensus_7218#2      CAAGTATATGACTATATTAATAAAAAAAAAGAAAA------------ 674
consensus_7218#1      GCAGAAAACAATAATAATAATGGCTCAATGTCCAAATCACCAAGAGT 736
                        ** * *  *  *** ****                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)