These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2034 fasta sequence [CCCCCCGCGCGCGCGCGCGTTTCGTTCGAACGATCGATGCGCCCCGGAGCACACGGCACGCACCCGCGCCGCGAGAGAAGAGGAAACCAAGCGATGCCGTCGGCCCGTGACACTAACATGGACTTGATGGAAGTCCTCTCGCCGCCGGCCGCCGCACGGGATCATCAGAAGAGCCAGGTTCGTGTCCAGAGGAGCCTCTCAAGCTCTTCTGGGGTGTTTCAGGGATCTCTCACGTTTCTCTTTGTGGAAAAAAAAACTAGGCAAAAAAAGGGTTTGCCTAATGTAGTAAAGCAGGGGGAGTTTGAAAGGGCTCTCTCTCACGTTGGGTAAGCTTGCCACCCGGCCCCCCCAGGTGCACGCCGCCGCGCGTGCGCTACCGCACCAAAGCGCCAGCGTTGTCGTGGACGGACGCATGCCGCCGCCGGCCGCCGTCGCAAGCCTGACGTTACAAGTCCCCGGAGGAGCTCACGATGTCACTTCTCTGGCTACTAGTCCAAGGACCATGGCCGTGCCTGGAACGACTGAACAGCTGACGATTTTCTACTCCGGGTCTATGGTGAAGTTCGACAACGTCCCAAGGGAGAAGATTCGCTATGCGTGCAGGCTGAGGAGGTTATATTCTTCGCTGCAAAGAAGTCTCCAGACGCAGGACACCAGCATGTTCCCCAGCAGCAGCAGCCTGCATATCCAAACAAAAAGAAGAGGATATTCTGTTATCAGGCTCCTGAGAGAGATGCTGATGGTTTGTTCATCCACGAGAACAAAGCCGATGCTTGTTCACAGCGACAGCATCGGAGCCCAGAGGACGGGTACGCCACCATCAAGGAGACGAATCCATGCTCGCGGCAAATCCAGATCGTGCCAAGAGATGTCTCATTGCTGGTGAAGAATGCGTCTCTTGTTAGCTTCCTGGAGAGCCGCAAGCAGAGGTTGGCGAGTGCAGCTTACACTCGCCGTGAGAAATCTCCTGATGAAAAGGACATTTTTCCTACGGCTTTCCCACGAAATAAAACCCCACTCGGCAACACGGAACGGCATAGTGCTTTCACGAACCTGAAGAATATTAACGGAAATCATGACGAGGAGGCACTAGATACCGAGTTGAAGATCTAGCCGCGAAGTTTTGGATTCAGTTTGCGGCACGGGAACCTCTTGCTAATCAAGCACAAGTTTTGGACTCAGTAGGTGGAGTGATGAACTAAGTAGAAACCTAGTGGTGCATTTGGTAGCAAGAGCCTTTTTTTTTCTTATTTTAATTCTGAATTTCTGATGAGGTTTTTTAAG-GCAGTAGTGATGTTCACTCGCA-GTTTCATATGAAACCGAGGCATCGTCACCCTTTTCTTCTTCTCATTGACGGGAGAAAAGGTTTTCGGATTCGTTCGGATTGTTGCCTCTGAT-------ATCAGATTGCACGGTCCTTTTTGTAACTGAGGATAGCTGAAATAAAATACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAATATTGAGGGCCACTATGAAATATTTCCTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGGCACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAAAGCCAGCTTCTGCCGTAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTAGACTGGAGCTAAGCGGAGGAGACCGCGCGGTACAGATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCGCCGTGCGGTGTTGTAACCTCACCCCCGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCGTTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTAAATATTATGGGCTGGTTTGGTTTGAGGCCTAAATTAGGCTTACCAATATTTGACAATTTCAATAGTGTTTAGTACCTATTTGGTTTGAAGCCAAATTTTAGCATGCCTAAGAAAATAGGTCATTTCAATAGTGAACTTAGGCTATTTTGGCTTCAATCCAAACATAACTTTGCCTTACTAAAATTAGTCGTGCC] [+] EMBL AK107003 [CCCCCCGCGCGCGCGCGCGTTTCGTTCGAACGATCGATGCGCCCCGGAGCACACGGCACGCACCCGCGCCGCGAGAGAAGAGGAAACCAAGCGATGCCGTCGGCCCGTGACACTAACATGGACTTGATGGAAGTCCTCTCGCCGCCGGCCGCCGCACGGGATCATCAGAAGAGCCAGGTTCGTGTCCAGAGGAGCCTCTCAAGCTCTTCTGGGGTGTTTCAGGGATCTCTCACGTTTCTCTTTGTGGAAAAAAAAACTAGGCAAAAAAAGGGTTTGCCTAATGTAGTAAAGCAGGGGGAGTTTGAAAGGGCTCTCTCTCACGTTGGGTAAGCTTGCCACCCGGCCCCCCCAGGTGCACGCCGCCGCGCGTGCGCTACCGCACCAAAGCGCCAGCGTTGTCGTGGACGGACGCATGCCGCCGCCGGCCGCCGTCGCAAGCCTGACGTTACAAGTCCCCGGAGGAGCTCACGATGTCACTTCTCTGGCTACTAGTCCAAGGACCATGGCCGTGCCTGGAACGACTGAACAGCTGACGATTTTCTACTCCGGGTCTATGGTGAAGTTCGACAACGTCCCAAGGGAGAAGATTCGCTATGCGTGCAGGCTGAGGAGGTTATATTCTTCGCTGCAAAGAAGTCTCCAGACGCAGGACACCAGCATGTTCCCCAGCAGCAGCAGCCTGCATATCCAAACAAAAAGAAGAGGATATTCTGTTATCAGGCTCCTGAGAGAGATGCTGATGGTTTGTTCATCCACGAGAACAAAGCCGATGCTTGTTCACAGCGACAGCATCGGAGCCCAGAGGACGGGTACGCCACCATCAAGGAGACGAATCCATGCTCGCGGCAAATCCAGATCGTGCCAAGAGATGTCTCATTGCTGGTGAAGAATGCGTCTCTTGTTAGCTTCCTGGAGAGCCGCAAGCAGAGGTTGGCGAGTGCAGCTTACACTCGCCGTGAGAAATCTCCTGATGAAAAGGACATTTTTCCTACGGCTTTCCCACGAAATAAAACCCCACTCGGCAACACGGAACGGCATAGTGCTTTCACGAACCTGAAGAATATTAACGGAAATCATGACGAGGAGGCACTAGATACCGAGTTGAAGATCTAGCCGCGAAGTTTTGGATTCAGTTTGCGGCACGGGAACCTCTTGCTAATCAAGCACAAGTTTTGGACTCAGTAGGTGGAGTGATGAACTAAGTAGAAACCTAGTGGTGCATTTGGTAGCAAGAGCCTTTTTTTTTCTTATTTTAATTCTGAATTTCTGATGAGGTTTTTTAAGTGCAGTAGTGATGTTCACTCGCA GTTTCATATGAAACCGAGGCATCGTCACCCTTTTCTTCTTCTCATTGACGGGAGAAAAGGTTTTCGGATTCGTTCGGATTGTTGCCTCTGATTACATTGATCAGATTGCACGGTCCTTTTTGTAACTGAGGATAGCTGAAATAAAATAC ] [+] EMBL CB626823 [ TTCTGAATTTCTGATGAGGTTTTTTAAG GCAGTAGTGATGTTCACTCGCA GTTTCATATGAAACCGAGGCATCGTCACCCTTTTCTTCTTCTCATTGACGGGAGAAAAGGTTTTCGGATTCGTTCGGATTGTTGCCTCTGAT ATCAGATTGCACGGTCCTTTTTGTAACTGAGGATAGCTGAAATAAAATACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAATATTGAGGGCCACTATGAAATATTTCCTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGGCACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAAAGCCAGCTTCTGCCGTAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTAGACTGGAGCTAAGCGGAGGAGACCGCGCGGTACAGATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCGCCGTGCGGTGTTGTAACCTCACCCCCGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCGTTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTAAATATTATGGGCTGGTTTGGTTTGAGGCCTAAATTAGGCTTACCAATATTTGACAATTTCAATAGTGTTTAGTACCTATTTGGTTTGAAGCCAAATTTTAGCATGCCTAAGAAAATAGGTCATTTCAATAGTGAACTTAGGCTATTTTGGCTTCAATCCAAACATAACTTTGCCTTACTAAAATTAGTCGTGCC] [+] EMBL CB626822 [ GAGGTTTTTTAAG GCACTTTTGATGTTCACTCGCACGTTTCATATGAAACCGAGGCATCGGCACCCTTTTCTTCTTCTCATTGACGGGACAAAAGGTTTTCGGATTCGTTCGGATTGTTGCCTCTGAT ATCAAATTGCACGGCCCTTTTTGTAACTGAGGATAGCTGAAATAAAATACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAATATTGAGGGCCACTATGAAATATTTCCTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGGCACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAAAGCCAGCTTCTGCCGTAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTAAACTGGAGCTAAGCGGAGGAGACCGCGCGGTACAAATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCGCCGTGCGGTGTTGTAACCTCACCCCCGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCGTTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTAAATATTATGGGCTGGTTTGGTTTGAGGCCTAAATTAGGCTTACCAATATTTGACAATTTCAATAGTGTTTAGTACCTATTTGGTTTGAAGCCAAATTTTACCATGC ] consensusID : consensus_7227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [AGAGGACGAGACAAGGGGCTGGTTTGATTTGAGGCCTAAATTAGACTTACTAATATTTAGCAATTTAAATAGTGCTTAGTGTTTATTTGGTTTGAAGCCAAATTTTAGTATGCCTAAGAAAATAGGTCATTTCAATAGTAAACTTAGCCTATTTTGGCTTTAATCCAAACACAATTTTGCTTTATCAAAATTAATCATGTCAAAACTTACCAAAAAAAAAAAAAAA] [-] EMBL CA760428 [AGAGGACGAGACAAGGGGCTGGTTTGATTTGAGGCCTAAATTAGACTTACTAATATTTAGCAATTTAAATAGTGCTTAGTGTTTATTTGGTTTGAAGCCAAATTTTAGTATGCCTAAGAAAATAGGTCATTTCAATAGTAAACTTAGCCTATTTTGGCTTTAATCCAAACACAATTTTGCTTTATCAAAATTAATCATGTCAAAACTTACCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7227#0 CCCCCCGCGCGCGCGCGCGTTTCGTTCGAACGATCGATGCGCCCCGGAGCACACGGCACG 60 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CACCCGCGCCGCGAGAGAAGAGGAAACCAAGCGATGCCGTCGGCCCGTGACACTAACATG 120 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 GACTTGATGGAAGTCCTCTCGCCGCCGGCCGCCGCACGGGATCATCAGAAGAGCCAGGTT 180 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CGTGTCCAGAGGAGCCTCTCAAGCTCTTCTGGGGTGTTTCAGGGATCTCTCACGTTTCTC 240 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 TTTGTGGAAAAAAAAACTAGGCAAAAAAAGGGTTTGCCTAATGTAGTAAAGCAGGGGGAG 300 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 TTTGAAAGGGCTCTCTCTCACGTTGGGTAAGCTTGCCACCCGGCCCCCCCAGGTGCACGC 360 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CGCCGCGCGTGCGCTACCGCACCAAAGCGCCAGCGTTGTCGTGGACGGACGCATGCCGCC 420 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 GCCGGCCGCCGTCGCAAGCCTGACGTTACAAGTCCCCGGAGGAGCTCACGATGTCACTTC 480 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 TCTGGCTACTAGTCCAAGGACCATGGCCGTGCCTGGAACGACTGAACAGCTGACGATTTT 540 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CTACTCCGGGTCTATGGTGAAGTTCGACAACGTCCCAAGGGAGAAGATTCGCTATGCGTG 600 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CAGGCTGAGGAGGTTATATTCTTCGCTGCAAAGAAGTCTCCAGACGCAGGACACCAGCAT 660 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 GTTCCCCAGCAGCAGCAGCCTGCATATCCAAACAAAAAGAAGAGGATATTCTGTTATCAG 720 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 GCTCCTGAGAGAGATGCTGATGGTTTGTTCATCCACGAGAACAAAGCCGATGCTTGTTCA 780 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CAGCGACAGCATCGGAGCCCAGAGGACGGGTACGCCACCATCAAGGAGACGAATCCATGC 840 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 TCGCGGCAAATCCAGATCGTGCCAAGAGATGTCTCATTGCTGGTGAAGAATGCGTCTCTT 900 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 GTTAGCTTCCTGGAGAGCCGCAAGCAGAGGTTGGCGAGTGCAGCTTACACTCGCCGTGAG 960 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 AAATCTCCTGATGAAAAGGACATTTTTCCTACGGCTTTCCCACGAAATAAAACCCCACTC 1020 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 GGCAACACGGAACGGCATAGTGCTTTCACGAACCTGAAGAATATTAACGGAAATCATGAC 1080 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 GAGGAGGCACTAGATACCGAGTTGAAGATCTAGCCGCGAAGTTTTGGATTCAGTTTGCGG 1140 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CACGGGAACCTCTTGCTAATCAAGCACAAGTTTTGGACTCAGTAGGTGGAGTGATGAACT 1200 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 AAGTAGAAACCTAGTGGTGCATTTGGTAGCAAGAGCCTTTTTTTTTCTTATTTTAATTCT 1260 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 GAATTTCTGATGAGGTTTTTTAAGGCAGTAGTGATGTTCACTCGCAGTTTCATATGAAAC 1320 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CGAGGCATCGTCACCCTTTTCTTCTTCTCATTGACGGGAGAAAAGGTTTTCGGATTCGTT 1380 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CGGATTGTTGCCTCTGATATCAGATTGCACGGTCCTTTTTGTAACTGAGGATAGCTGAAA 1440 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 TAAAATACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAAT 1500 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 ATTGAGGGCCACTATGAAATATTTCCTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGG 1560 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAAAGCCAGCTTCTGCCG 1620 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 TAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTAGACTGGAGCTAAGCGGAGGAGACCGCG 1680 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CGGTACAGATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCG 1740 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 CCGTGCGGTGTTGTAACCTCACCCCCGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCG 1800 consensus_7227#1 ------------------------------------------------------------ consensus_7227#0 TTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTA-AATATTATGGGCTGGTTTG 1859 consensus_7227#1 ----------------------------------AGAGGACGAGACAAGGGGCTGGTTTG 26 * * * * * * *********** consensus_7227#0 GTTTGAGGCCTAAATTAGGCTTACCAATATTTGACAATTTCAATAGTGTTTAGTACCTAT 1919 consensus_7227#1 ATTTGAGGCCTAAATTAGACTTACTAATATTTAGCAATTTAAATAGTGCTTAGTGTTTAT 86 ***************** ***** ******* ****** ******* ***** *** consensus_7227#0 TTGGTTTGAAGCCAAATTTTAGCATGCCTAAGAAAATAGGTCATTTCAATAGTGAACTTA 1979 consensus_7227#1 TTGGTTTGAAGCCAAATTTTAGTATGCCTAAGAAAATAGGTCATTTCAATAGTAAACTTA 146 ********************** ****************************** ****** consensus_7227#0 GGCTATTTTGGCTTCAATCCAAACATAACTTTGCCTTACTAAAATTAGTCGTGCC----- 2034 consensus_7227#1 GCCTATTTTGGCTTTAATCCAAACACAATTTTGCTTTATCAAAATTAATCATGTCAAAAC 206 * ************ ********** ** ***** *** ******* ** ** * consensus_7227#0 -------------------- consensus_7227#1 TTACCAAAAAAAAAAAAAAA 226 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||