cluster # 7231

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Oryza sativa
cluster # 7231 cluster # 7231 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7231#0 length = 1409 sequences # 3

consensus_7231#1 length = 390 sequences # 1

consensusID : consensus_7231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1409
fasta sequence

                              [GTTGAGTTAAGTTGAGTTGAGTAGTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGACGCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCGGCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCTGCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCACCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACGCGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGAACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCGCCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGAGGAGGGATGGCACGGTGTCGAGCATGCAGGAGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCTTGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCATCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCGGCAATGCCAACGGCAACAACACCGATCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACCTGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCCACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGTCCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGAGCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGCAGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCCACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTACGATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAAACAGAATACATACAGTTTACAGTATGAACAGAAAATAAGACAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATAACAAAGCTTGCAAATAC]

[+] EMBL AK105544             [GTTGAGTTAAGTTGAGTTGAGTAGTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGACGCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCGGCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCTGCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCACCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACGCGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGAACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCGCCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGAGGAGGGATGGCACGGTGTCGAGCATGCAGGAGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCTTGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCATCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCGGCAATGCCAACGGCAACAACACCGATCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACCTGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCCACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGTCCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGAGCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGCAGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCCACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTACGATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAAACAGAATACATACAGTTTACAGTATGAACAGAAAATAAGACAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATAACAAAGCTTGCAAATAC]
[+] EMBL CB645214             [              AGTTGACCCTTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGACGCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCGGCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCTGCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCACCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACGCGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGAACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCGCCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB645215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCTTGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCATCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCGGCAATGCCAACGGCAACAACACCGACCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACCTGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCCACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGTCCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGAGCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGCAGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCCACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTACGATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAA                                                                                                              ]




>consensus_7231#0
GTTGAGTTAAGTTGAGTTGAGTAGTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGAC
GCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCG
GCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCT
GCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCA
CCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACG
CGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGA
ACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCT
GCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCG
CCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGAGGAGGGATGGCACGGTGTCGAGCA
TGCAGGAGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCT
TGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCA
TCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCG
GCAATGCCAACGGCAACAACACCGATCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACC
TGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCC
ACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGT
CCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGA
GCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGC
AGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCC
ACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTAC
GATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGT
GTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAA
GTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAAACAGAATACATACAGTTTACA
GTATGAACAGAAAATAAGACAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCAT
GCACAGGTAATAACAAAGCTTGCAAATAC

consensusID : consensus_7231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [CAATTCTNCCTGGGATNGCGTGATTTTGTTCTTNCGATTTCTTCNCTTTTGTCATTTGAATTTGGTGAAATTCTNGTNGAAATTTTTNTGCNCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCANCCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTNTAGCTGNTGGGAAAANAAAANCAGNATACATACAGTTTNCNGTNTGAACAGAAAATAAGNCAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATNACAAAGCTTGCAAATACATCAAAAGACAGCCATGATGTATGCTACTTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU164779             [CAATTCTNCCTGGGATNGCGTGATTTTGTTCTTNCGATTTCTTCNCTTTTGTCATTTGAATTTGGTGAAATTCTNGTNGAAATTTTTNTGCNCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCANCCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTNTAGCTGNTGGGAAAANAAAANCAGNATACATACAGTTTNCNGTNTGAACAGAAAATAAGNCAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATNACAAAGCTTGCAAATACATCAAAAGACAGCCATGATGTATGCTACTTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7231#1
CAATTCTNCCTGGGATNGCGTGATTTTGTTCTTNCGATTTCTTCNCTTTTGTCATTTGAA
TTTGGTGAAATTCTNGTNGAAATTTTTNTGCNCGTGTTCTTGTTGTGTTCAGTGTCGTTG
CTGCANCCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTNTAGCTGN
TGGGAAAANAAAANCAGNATACATACAGTTTNCNGTNTGAACAGAAAATAAGNCAAAATT
CTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATNACAAAGCTTGCAAA
TACATCAAAAGACAGCCATGATGTATGCTACTTTATTTGGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7231#0      GTTGAGTTAAGTTGAGTTGAGTAGTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGAC 60
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      GCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCG 120
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      GCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCT 180
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      GCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCA 240
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      CCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACG 300
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      CGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGA 360
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      ACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCT 420
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      GCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCG 480
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      CCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGAGGAGGGATGGCACGGTGTCGAGCA 540
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      TGCAGGAGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCT 600
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      TGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCA 660
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      TCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCG 720
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      GCAATGCCAACGGCAACAACACCGATCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACC 780
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      TGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCC 840
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      ACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGT 900
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      CCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGA 960
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      GCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGC 1020
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      AGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCC 1080
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      ACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTAC 1140
consensus_7231#1      -------------------------CAATTCTNCCTGGGATNGCGTGATTTTGTTCTTNC 35
                                               ******* ******** **************** *

consensus_7231#0      GATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGT 1200
consensus_7231#1      GATTTCTTCNCTTTTGTCATTTGAATTTGGTGAAATTCTNGTNGAAATTTTTNTGCNCGT 95
                      ********* ***************************** ** ********  *** ***

consensus_7231#0      GTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAA 1260
consensus_7231#1      GTTCTTGTTGTGTTCAGTGTCGTTGCTGCANCCGGCAAAGCTGTGTTCTTTTGCTTTGAA 155
                      ****************************** *****************************

consensus_7231#0      GTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAAACAGAATACATACAGTTTACA 1320
consensus_7231#1      GTGTGCTGTAGTAATTTNTAGCTGNTGGGAAAANAAAAN-CAGNATACATACAGTTTNCN 214
                      ***************** ****** ** ***** ****  *** ************* * 

consensus_7231#0      GTATGAACAGAAAATAAGACAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCAT 1380
consensus_7231#1      GTNTGAACAGAAAATAAGNCAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCAT 274
                      ** *************** *****************************************

consensus_7231#0      GCACAGGTAATAACAAAGCTTGCAAATAC------------------------------- 1409
consensus_7231#1      GCACAGGTAATNACAAAGCTTGCAAATACATCAAAAGACAGCCATGATGTATGCTACTTT 334
                      *********** *****************                               

consensus_7231#0      --------------------------------------------------------
consensus_7231#1      ATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 390