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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1403 fasta sequence
[TAACCAAGAAGCATAGCCATAGCTAGTGATCGATGTGTCCGTCCATTCCTGTATAAAAAAGATAGGCGTTGTAGCGAGCACTATCACTAAGCCGTATATAAAGAGAGCAGTTTAGTACTAAAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGATGGCGACGGGGCTGGAGGCGCAGCTGCGGGTGGGGTTCTACGACAACTCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAAGGGGAACCAGGCGGAGAA-GGACGCCGGGCCGAACACCAGCCTGCGTGGGTTCGAGGTGGTCGACCGCATCAAGGCCCGCGTCGAGCAGGCTTGCTTCGGCGTCGTCTCCTGTGCCGACATCCTCGCCTTCG-CCGCCCGCGACAGCGTCGC-CCTGACCGGCGGGAACGCGTACCAGGTGCCGGCGGGGCGGCGGGACGGGAGCGTGTCGCGGTCGTCGGACACCGGCGGCAACCTGCCGCCGCCGACGGCGAGCGTGAGCCAGCTGACGCAGTTGTTCGCGGCGAAGGGGCTGAGCCAGCGGGAGATGGTGGCGCTGTCCGGGGCGCACACCATCGGCGCGTCGCACTGCAGCTCGTTCAGCAGCCGCCTGTACCGGGCGGGCACGACGGCCGGCGGCGCCGGCGGCGGGCAGGACCCGACCATGGACCCGGCGTACGTGGCGCAGCTGGCATAGCAGTGCCCGCAGAGCGGCGGCGCCGCCGGCGGCGGCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTTCTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGACAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGACTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAAGGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCGTGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGTTGGTTGGTTGTGCATCAAGAGCTAGAGCTCTCTATTCTTTGGCTGATGATCTGTATTAATTCTTTGTGACTGTGTGTGTCTTTTGAGAGAACTGTAAGTTGTAACTAGCCATGTGTGCCAAATGGTGCTTAATAATTAAAAAA]
[+] EMBL AK105708 [TAACCAAGAAGCATAGCCATAGCTAGTGATCGATGTGTCCGTCCATTCCTGTATAAAAAAGATAGGCGTTGTAGCGAGCACTATCACTAAGCCGTATATAAAGAGAGCAGTTTAGTACTAAAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGAGGGCGACGGGGCTGGAGGCGCAGCTGCGGGTGGGGTTCTACGACAACTCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAAGGGGAACCAGGCGGAGAA GGACGCCGGGCCGAACACCAGCCTGCGTGGGTTCGAGGTGGTCGACCGCATCAAGGCCCGCGTCGAGCAGGCTTGCTTCGGCGTCGTCTCCTGTGCCGACATCCTCGCCTTCG CCGCCCGCGACAGCGTCGC CCTGACCGGCGGGAACGCGTACCAGGTGCCGGCGGGGCGGCGGGACGGGAGCGTGTCGCGGTCGTCGGACACCGGCGGCAACCTGCCGCCGCCGACGGCGAGCGTGAGCCAGCTGACGCAGTTGTTCGCGGCGAAGGGGCTGAGCCAGCGGGAGATGGTGGCGCTGTCCGGGGCGCACACCATCGGCGCGTCGCACTGCAGCTCGTTCAGCAGCCGCCTGTACCGGGCGGGCACGACGGCCGGCGGCGCCGGCGGCGGGCAGGACCCGACCATGGACCCGGCGTACGTGGCGCAGCTGGCATAGCAGTGCCCGCAGAGCGGCGGCGCCGCCGGCGGCGGCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTTCTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGACAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGACTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAAGGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCGTGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGTTGGTTGGTTGTGCATCAAGAGCTAGAGCTCTCTATTCTTTGGCTGATGATCTGTATTAATTCTTTGTGACTGTGTGTGTCTTTTGAGAGAACTGTAAGTTGTAACTAGCCATGTGTGCCAAATGGTGCTTAATAATTAAAAAA]
[+] EMBL AU032334 [ GTTTAGTACTAAAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGATGGCGACGGGGCTGGAGGCGCA CTGCGGGTGGGGTTCTACGACAACTCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAANGGGAACCAAGCGGAGAANGGACGCCGGGCCGAACACCAGCCTNCGTGGGTTCGAAGTGGTCGACCGCAT ]
[+] EMBL CA754901 [ TACTAAAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGATGGCGACGGGGCTGGAGGCGCAGCTGCGGGTGGGGTTCTACGACGACTCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAAGGGGAACCAGGCGGAGAA GGACGCCGGGGCGAACACCAGCCTGCGTGGGTTCGAGGTGGTCGACCGCATCAAGGCCCGCGTCGAGCAGGCTTGCTTCGGCGTCGTCTCCTGTGCCGACATCCTCGCCTTCGACGGCCGGCGACAGCGTCGCGCCTGA CGGCGGGAACGCGTA CAGGTGCCGG GCGGCGG GGGACGGGCACGTGTCGC GTCGTCGGAC CCGGGGGC ACCTGCCCTCG CGACGG TAGCG GGGCCCGCTGAC C GAAG TCCCGGCGGAGG ]
consensusID : consensus_7233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence
[GCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTTNTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGACAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGACTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAAGGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCGTGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGTTGGTTGGTTGTGCATCAAGAGCTAGAGCTCTNTATTNTTTGGCTAAAAAAAAAAAAA]
[+] EMBL AU184784 [GCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTTNTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGACAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGACTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAAGGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCGTGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGTTGGTTGGTTGTGCATCAAGAGCTAGAGCTCTNTATTNTTTGGCTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7233#0 TAACCAAGAAGCATAGCCATAGCTAGTGATCGATGTGTCCGTCCATTCCTGTATAAAAAA 60
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 GATAGGCGTTGTAGCGAGCACTATCACTAAGCCGTATATAAAGAGAGCAGTTTAGTACTA 120
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 AAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGAT 180
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 GCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGATGGCGACGGGGCTGGA 240
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 GGCGCAGCTGCGGGTGGGGTTCTACGACAACTCGTGCCCGGCGGCGGAGATCATCGTGCA 300
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 GCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCT 360
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 CCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAA 420
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 GGGGAACCAGGCGGAGAAGGACGCCGGGCCGAACACCAGCCTGCGTGGGTTCGAGGTGGT 480
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 CGACCGCATCAAGGCCCGCGTCGAGCAGGCTTGCTTCGGCGTCGTCTCCTGTGCCGACAT 540
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 CCTCGCCTTCGCCGCCCGCGACAGCGTCGCCCTGACCGGCGGGAACGCGTACCAGGTGCC 600
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 GGCGGGGCGGCGGGACGGGAGCGTGTCGCGGTCGTCGGACACCGGCGGCAACCTGCCGCC 660
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 GCCGACGGCGAGCGTGAGCCAGCTGACGCAGTTGTTCGCGGCGAAGGGGCTGAGCCAGCG 720
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 GGAGATGGTGGCGCTGTCCGGGGCGCACACCATCGGCGCGTCGCACTGCAGCTCGTTCAG 780
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 CAGCCGCCTGTACCGGGCGGGCACGACGGCCGGCGGCGCCGGCGGCGGGCAGGACCCGAC 840
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 CATGGACCCGGCGTACGTGGCGCAGCTGGCATAGCAGTGCCCGCAGAGCGGCGGCGCCGC 900
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 CGGCGGCGGCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTT 960
consensus_7233#1 --------GCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTT 52
****************************************************
consensus_7233#0 CTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGA 1020
consensus_7233#1 NTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGA 112
***********************************************************
consensus_7233#0 CAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGA 1080
consensus_7233#1 CAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGA 172
************************************************************
consensus_7233#0 CTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAA 1140
consensus_7233#1 CTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAA 232
************************************************************
consensus_7233#0 GGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCG 1200
consensus_7233#1 GGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCG 292
************************************************************
consensus_7233#0 TGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGT 1260
consensus_7233#1 TGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGT 352
************************************************************
consensus_7233#0 TGGTTGGTTGTGCATCAAGAGCTAGAGCTCTCTATTCTTTGGCTGATGATCTGTATTAAT 1320
consensus_7233#1 TGGTTGGTTGTGCATCAAGAGCTAGAGCTCTNTATTNTTTGGCTAAAAAAAAAAAAA--- 409
******************************* **** ******* * * *
consensus_7233#0 TCTTTGTGACTGTGTGTGTCTTTTGAGAGAACTGTAAGTTGTAACTAGCCATGTGTGCCA 1380
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 AATGGTGCTTAATAATTAAAAAA 1403
consensus_7233#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||