These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1403 fasta sequence [TAACCAAGAAGCATAGCCATAGCTAGTGATCGATGTGTCCGTCCATTCCTGTATAAAAAAGATAGGCGTTGTAGCGAGCACTATCACTAAGCCGTATATAAAGAGAGCAGTTTAGTACTAAAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGATGGCGACGGGGCTGGAGGCGCAGCTGCGGGTGGGGTTCTACGACAACTCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAAGGGGAACCAGGCGGAGAA-GGACGCCGGGCCGAACACCAGCCTGCGTGGGTTCGAGGTGGTCGACCGCATCAAGGCCCGCGTCGAGCAGGCTTGCTTCGGCGTCGTCTCCTGTGCCGACATCCTCGCCTTCG-CCGCCCGCGACAGCGTCGC-CCTGACCGGCGGGAACGCGTACCAGGTGCCGGCGGGGCGGCGGGACGGGAGCGTGTCGCGGTCGTCGGACACCGGCGGCAACCTGCCGCCGCCGACGGCGAGCGTGAGCCAGCTGACGCAGTTGTTCGCGGCGAAGGGGCTGAGCCAGCGGGAGATGGTGGCGCTGTCCGGGGCGCACACCATCGGCGCGTCGCACTGCAGCTCGTTCAGCAGCCGCCTGTACCGGGCGGGCACGACGGCCGGCGGCGCCGGCGGCGGGCAGGACCCGACCATGGACCCGGCGTACGTGGCGCAGCTGGCATAGCAGTGCCCGCAGAGCGGCGGCGCCGCCGGCGGCGGCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTTCTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGACAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGACTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAAGGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCGTGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGTTGGTTGGTTGTGCATCAAGAGCTAGAGCTCTCTATTCTTTGGCTGATGATCTGTATTAATTCTTTGTGACTGTGTGTGTCTTTTGAGAGAACTGTAAGTTGTAACTAGCCATGTGTGCCAAATGGTGCTTAATAATTAAAAAA] [+] EMBL AK105708 [TAACCAAGAAGCATAGCCATAGCTAGTGATCGATGTGTCCGTCCATTCCTGTATAAAAAAGATAGGCGTTGTAGCGAGCACTATCACTAAGCCGTATATAAAGAGAGCAGTTTAGTACTAAAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGAGGGCGACGGGGCTGGAGGCGCAGCTGCGGGTGGGGTTCTACGACAACTCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAAGGGGAACCAGGCGGAGAA GGACGCCGGGCCGAACACCAGCCTGCGTGGGTTCGAGGTGGTCGACCGCATCAAGGCCCGCGTCGAGCAGGCTTGCTTCGGCGTCGTCTCCTGTGCCGACATCCTCGCCTTCG CCGCCCGCGACAGCGTCGC CCTGACCGGCGGGAACGCGTACCAGGTGCCGGCGGGGCGGCGGGACGGGAGCGTGTCGCGGTCGTCGGACACCGGCGGCAACCTGCCGCCGCCGACGGCGAGCGTGAGCCAGCTGACGCAGTTGTTCGCGGCGAAGGGGCTGAGCCAGCGGGAGATGGTGGCGCTGTCCGGGGCGCACACCATCGGCGCGTCGCACTGCAGCTCGTTCAGCAGCCGCCTGTACCGGGCGGGCACGACGGCCGGCGGCGCCGGCGGCGGGCAGGACCCGACCATGGACCCGGCGTACGTGGCGCAGCTGGCATAGCAGTGCCCGCAGAGCGGCGGCGCCGCCGGCGGCGGCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTTCTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGACAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGACTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAAGGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCGTGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGTTGGTTGGTTGTGCATCAAGAGCTAGAGCTCTCTATTCTTTGGCTGATGATCTGTATTAATTCTTTGTGACTGTGTGTGTCTTTTGAGAGAACTGTAAGTTGTAACTAGCCATGTGTGCCAAATGGTGCTTAATAATTAAAAAA] [+] EMBL AU032334 [ GTTTAGTACTAAAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGATGGCGACGGGGCTGGAGGCGCA CTGCGGGTGGGGTTCTACGACAACTCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAANGGGAACCAAGCGGAGAANGGACGCCGGGCCGAACACCAGCCTNCGTGGGTTCGAAGTGGTCGACCGCAT ] [+] EMBL CA754901 [ TACTAAAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGATGGCGACGGGGCTGGAGGCGCAGCTGCGGGTGGGGTTCTACGACGACTCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAAGGGGAACCAGGCGGAGAA GGACGCCGGGGCGAACACCAGCCTGCGTGGGTTCGAGGTGGTCGACCGCATCAAGGCCCGCGTCGAGCAGGCTTGCTTCGGCGTCGTCTCCTGTGCCGACATCCTCGCCTTCGACGGCCGGCGACAGCGTCGCGCCTGA CGGCGGGAACGCGTA CAGGTGCCGG GCGGCGG GGGACGGGCACGTGTCGC GTCGTCGGAC CCGGGGGC ACCTGCCCTCG CGACGG TAGCG GGGCCCGCTGAC C GAAG TCCCGGCGGAGG ] consensusID : consensus_7233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [GCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTTNTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGACAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGACTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAAGGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCGTGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGTTGGTTGGTTGTGCATCAAGAGCTAGAGCTCTNTATTNTTTGGCTAAAAAAAAAAAAA] [+] EMBL AU184784 [GCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTTNTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGACAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGACTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAAGGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCGTGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGTTGGTTGGTTGTGCATCAAGAGCTAGAGCTCTNTATTNTTTGGCTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7233#0 TAACCAAGAAGCATAGCCATAGCTAGTGATCGATGTGTCCGTCCATTCCTGTATAAAAAA 60 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 GATAGGCGTTGTAGCGAGCACTATCACTAAGCCGTATATAAAGAGAGCAGTTTAGTACTA 120 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 AAGTGAGTGTGCTAGTGTGAGCTTAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGAT 180 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 GCTGTCGTGGTACTTGCAGGTGGCGGCGGTGAGCTTGCTGGCGATGGCGACGGGGCTGGA 240 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 GGCGCAGCTGCGGGTGGGGTTCTACGACAACTCGTGCCCGGCGGCGGAGATCATCGTGCA 300 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 GCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGCCTCGTCCGCCT 360 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 CCACTTCCACGACTGCTTCGTCAGGGGGTGCGATGCGTCGGTGCTGATCGACTCGACGAA 420 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 GGGGAACCAGGCGGAGAAGGACGCCGGGCCGAACACCAGCCTGCGTGGGTTCGAGGTGGT 480 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 CGACCGCATCAAGGCCCGCGTCGAGCAGGCTTGCTTCGGCGTCGTCTCCTGTGCCGACAT 540 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 CCTCGCCTTCGCCGCCCGCGACAGCGTCGCCCTGACCGGCGGGAACGCGTACCAGGTGCC 600 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 GGCGGGGCGGCGGGACGGGAGCGTGTCGCGGTCGTCGGACACCGGCGGCAACCTGCCGCC 660 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 GCCGACGGCGAGCGTGAGCCAGCTGACGCAGTTGTTCGCGGCGAAGGGGCTGAGCCAGCG 720 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 GGAGATGGTGGCGCTGTCCGGGGCGCACACCATCGGCGCGTCGCACTGCAGCTCGTTCAG 780 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 CAGCCGCCTGTACCGGGCGGGCACGACGGCCGGCGGCGCCGGCGGCGGGCAGGACCCGAC 840 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 CATGGACCCGGCGTACGTGGCGCAGCTGGCATAGCAGTGCCCGCAGAGCGGCGGCGCCGC 900 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 CGGCGGCGGCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTT 960 consensus_7233#1 --------GCGCGCTCGTGCCCATGGACGCCGTCACCCCCAACGCCTTCGACGAGGGCTT 52 **************************************************** consensus_7233#0 CTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGA 1020 consensus_7233#1 NTTCAAGGGCGTCATGAACAACCGCGGCCTGCTCTCCTCCGACCAGGCGCTGCTCGGCGA 112 *********************************************************** consensus_7233#0 CAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGA 1080 consensus_7233#1 CAAGAACACCGCCGTCCAGGTGGTCGCCTACGCCAACGACGCCTCCACCTTCCAGAGCGA 172 ************************************************************ consensus_7233#0 CTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAA 1140 consensus_7233#1 CTTCGCCGCCGCCATGGTCAAGATGGGCGCCGTCGGCGTGCTCACCGGCAGCAGCGGCAA 232 ************************************************************ consensus_7233#0 GGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCG 1200 consensus_7233#1 GGTCAGGGCAAACTGCAGGGTCGCCTGATGCAAATCGGTAAGCCATAGCTTAGCTCGCCG 292 ************************************************************ consensus_7233#0 TGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGT 1260 consensus_7233#1 TGACAACGTGACGTATCATGTATGTAACGTGCATTTTGTGTGTGCGTGTGTGTGTATGGT 352 ************************************************************ consensus_7233#0 TGGTTGGTTGTGCATCAAGAGCTAGAGCTCTCTATTCTTTGGCTGATGATCTGTATTAAT 1320 consensus_7233#1 TGGTTGGTTGTGCATCAAGAGCTAGAGCTCTNTATTNTTTGGCTAAAAAAAAAAAAA--- 409 ******************************* **** ******* * * * consensus_7233#0 TCTTTGTGACTGTGTGTGTCTTTTGAGAGAACTGTAAGTTGTAACTAGCCATGTGTGCCA 1380 consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 AATGGTGCTTAATAATTAAAAAA 1403 consensus_7233#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||