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Oryza sativa
cluster # 7238 cluster # 7238       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7238#0 length = 1341 sequences # 2  
consensus_7238#1 length = 568 sequences # 1  
consensus_7238#2 length = 217 sequences # 1  

consensusID : consensus_7238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1341
fasta sequence
                              [TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCCAACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAATGGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGAAGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAATTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTTTTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAGAAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAAGATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTTCTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTTTTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATAATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAATGTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAGCACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCCCTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGACACTCAAATTTAGTATTGTGAA]

[+] EMBL AK121895             [TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCCAACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAATGGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGAAGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAATTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTTTTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAGAAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAAGATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTTCTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTTTTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATAATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAATGTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAGCACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCCCTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGACACTCAAATTTAGTATTGTGAA]
[+] EMBL BE607435             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCC                                                                                  ]


>consensus_7238#0 TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCC AACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAAT GGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGA AGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAA TTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTT TTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAG AAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAA GATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTT CTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTT TTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATA ATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAAT GTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAG CACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAAT GCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACT GCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGC TTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCT GGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTAT CTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCA GAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCA GACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGA TTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCCC TTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGAC ACTCAAATTTAGTATTGTGAA



consensusID : consensus_7238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence
                              [GCACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF310840             [GCACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAA]


>consensus_7238#1 GCACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAA TGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAA CTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAA GCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGC CTGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGT ATTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATG CAGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATT CAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACAT GATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTC CCTTTTAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_7238#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence
                              [AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTCAGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTGATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCCCTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU161811             [AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTCAGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTGATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCCCTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_7238#2 AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTCAGAC NCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTGATTT CAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCCCTTT TNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7238#0      TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCC 60
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      AACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAAT 120
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      GGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGA 180
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      AGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAA 240
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      TTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTT 300
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      TTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAG 360
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      AAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAA 420
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      GATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTT 480
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      CTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTT 540
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      TTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATA 600
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      ATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAAT 660
consensus_7238#1      ------------------------------------------------------------
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      GTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAG 720
consensus_7238#1      -----------------------------------------------------------G 1
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      CACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAAT 780
consensus_7238#1      CACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAAT 61
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      GCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACC-TTGTTGTGTCTGTTTATGTAAC 839
consensus_7238#1      GCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAAC 121
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      TGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAG 899
consensus_7238#1      TGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAG 181
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      CTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCC 959
consensus_7238#1      CTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCC 241
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      TGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTA 1019
consensus_7238#1      TGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTA 301
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      TCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGC 1079
consensus_7238#1      TTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGC 361
consensus_7238#2      ------------------------------------------------------------
                                                                                  

consensus_7238#0      AGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTC 1139
consensus_7238#1      AGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTC 421
consensus_7238#2      ----AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTC 56
                          ************** ************  ****************** ********

consensus_7238#0      AGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATG 1199
consensus_7238#1      AGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATG 481
consensus_7238#2      AGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTG 116
                      **** ******************************************* * ****** **

consensus_7238#0      ATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCC 1259
consensus_7238#1      ATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCC 541
consensus_7238#2      ATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCC 176
                      ************ ********************* **** ********************

consensus_7238#0      CTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGA 1319
consensus_7238#1      CTTTTAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 568
consensus_7238#2      CTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA------------------- 217
                      *****     * *  *   * * *                                    

consensus_7238#0      CACTCAAATTTAGTATTGTGAA 1341
consensus_7238#1      ----------------------
consensus_7238#2      ----------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)